{"id":"https://openalex.org/W2018925823","doi":"https://doi.org/10.1093/nar/gkq1115","title":"AgBase: supporting functional modeling in agricultural organisms","display_name":"AgBase: supporting functional modeling in agricultural organisms","publication_year":2010,"publication_date":"2010-11-11","ids":{"openalex":"https://openalex.org/W2018925823","doi":"https://doi.org/10.1093/nar/gkq1115","mag":"2018925823","pmid":"https://pubmed.ncbi.nlm.nih.gov/21075795"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkq1115","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq1115","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gkq1115","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089552380","display_name":"Fiona McCarthy","orcid":"https://orcid.org/0000-0003-2175-5464"},"institutions":[{"id":"https://openalex.org/I99041443","display_name":"Mississippi State University","ror":"https://ror.org/0432jq872","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I99041443"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fiona M. McCarthy","raw_affiliation_strings":["Department of Basic Sciences, College of Veterinary Medicine, PO Box 6100, Mississippi State University, MS 39762, USA. fmccarthy@cvm.msstate.edu","Department of Basic Sciences, College of Veterinary Medicine, PO Box 6100, Mississippi State University, MS 39762, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Basic Sciences, College of Veterinary Medicine, PO Box 6100, Mississippi State University, MS 39762, USA. fmccarthy@cvm.msstate.edu","institution_ids":["https://openalex.org/I99041443"]},{"raw_affiliation_string":"Department of Basic Sciences, College of Veterinary Medicine, PO Box 6100, Mississippi State University, MS 39762, USA","institution_ids":["https://openalex.org/I99041443"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079581975","display_name":"Cathy Gresham","orcid":null},"institutions":[{"id":"https://openalex.org/I99041443","display_name":"Mississippi State University","ror":"https://ror.org/0432jq872","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I99041443"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cathy R. Gresham","raw_affiliation_strings":["Mississippi State University, Starkville, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mississippi State University, Starkville, United States","institution_ids":["https://openalex.org/I99041443"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Teresia J. Buza","orcid":null},"institutions":[{"id":"https://openalex.org/I99041443","display_name":"Mississippi State University","ror":"https://ror.org/0432jq872","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I99041443"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Teresia J. Buza","raw_affiliation_strings":["Mississippi State University, Starkville, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mississippi State University, Starkville, United States","institution_ids":["https://openalex.org/I99041443"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035053812","display_name":"Philippe Chouvarine","orcid":"https://orcid.org/0000-0003-0563-315X"},"institutions":[{"id":"https://openalex.org/I99041443","display_name":"Mississippi State University","ror":"https://ror.org/0432jq872","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I99041443"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Philippe Chouvarine","raw_affiliation_strings":["Mississippi State University, Starkville, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mississippi State University, Starkville, United States","institution_ids":["https://openalex.org/I99041443"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054178670","display_name":"Lakshmi Pillai","orcid":"https://orcid.org/0000-0002-6570-2041"},"institutions":[{"id":"https://openalex.org/I99041443","display_name":"Mississippi State University","ror":"https://ror.org/0432jq872","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I99041443"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lakshmi R. Pillai","raw_affiliation_strings":["Mississippi State University, Starkville, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mississippi State University, Starkville, United States","institution_ids":["https://openalex.org/I99041443"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100695007","display_name":"Ranjit Kumar","orcid":"https://orcid.org/0000-0002-2170-1274"},"institutions":[{"id":"https://openalex.org/I99041443","display_name":"Mississippi State University","ror":"https://ror.org/0432jq872","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I99041443"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ranjit Kumar","raw_affiliation_strings":["Mississippi State University, Starkville, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mississippi State University, Starkville, United States","institution_ids":["https://openalex.org/I99041443"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071241753","display_name":"Seval Ozkan","orcid":null},"institutions":[{"id":"https://openalex.org/I99041443","display_name":"Mississippi State University","ror":"https://ror.org/0432jq872","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I99041443"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Seval Ozkan","raw_affiliation_strings":["Mississippi State University, Starkville, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mississippi State University, Starkville, United States","institution_ids":["https://openalex.org/I99041443"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100460768","display_name":"Hui Wang","orcid":"https://orcid.org/0000-0002-3394-1531"},"institutions":[{"id":"https://openalex.org/I99041443","display_name":"Mississippi State University","ror":"https://ror.org/0432jq872","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I99041443"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hui Wang","raw_affiliation_strings":["Mississippi State University, Starkville, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mississippi State University, Starkville, United States","institution_ids":["https://openalex.org/I99041443"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054086551","display_name":"Prashanti Manda","orcid":"https://orcid.org/0000-0002-7162-7770"},"institutions":[{"id":"https://openalex.org/I99041443","display_name":"Mississippi State University","ror":"https://ror.org/0432jq872","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I99041443"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Prashanti Manda","raw_affiliation_strings":["Mississippi State University, Starkville, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mississippi State University, Starkville, United States","institution_ids":["https://openalex.org/I99041443"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Tony Arick","orcid":null},"institutions":[{"id":"https://openalex.org/I99041443","display_name":"Mississippi State University","ror":"https://ror.org/0432jq872","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I99041443"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tony Arick","raw_affiliation_strings":["Mississippi State University, Starkville, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mississippi State University, Starkville, United States","institution_ids":["https://openalex.org/I99041443"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112009477","display_name":"Susan M. Bridges","orcid":null},"institutions":[{"id":"https://openalex.org/I99041443","display_name":"Mississippi State University","ror":"https://ror.org/0432jq872","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I99041443"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Susan M. Bridges","raw_affiliation_strings":["Mississippi State University, Starkville, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mississippi State University, Starkville, United States","institution_ids":["https://openalex.org/I99041443"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060219125","display_name":"Shane C. Burgess","orcid":"https://orcid.org/0000-0003-0076-9461"},"institutions":[{"id":"https://openalex.org/I99041443","display_name":"Mississippi State University","ror":"https://ror.org/0432jq872","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I99041443"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shane C. Burgess","raw_affiliation_strings":["Mississippi State University, Starkville, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mississippi State University, Starkville, United States","institution_ids":["https://openalex.org/I99041443"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I99041443"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.7701,"has_fulltext":false,"cited_by_count":71,"citation_normalized_percentile":{"value":0.83832248,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"39","issue":"suppl_1","first_page":"D497","last_page":"D506"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9799000024795532,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.9781000018119812,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.8282724618911743},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7349275350570679},{"id":"https://openalex.org/keywords/functional-genomics","display_name":"Functional genomics","score":0.6426703333854675},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5859926342964172},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.5545578598976135},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5437158346176147},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4841102361679077},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.43813690543174744},{"id":"https://openalex.org/keywords/genome-project","display_name":"Genome project","score":0.4174472689628601},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.4158787131309509},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4081021547317505},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.35094624757766724},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3371328115463257},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.24785926938056946},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2189461588859558},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16020557284355164}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.8282724618911743},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7349275350570679},{"id":"https://openalex.org/C161078062","wikidata":"https://www.wikidata.org/wiki/Q1068690","display_name":"Functional genomics","level":5,"score":0.6426703333854675},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5859926342964172},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.5545578598976135},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5437158346176147},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4841102361679077},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.43813690543174744},{"id":"https://openalex.org/C89566754","wikidata":"https://www.wikidata.org/wiki/Q2273828","display_name":"Genome project","level":4,"score":0.4174472689628601},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.4158787131309509},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4081021547317505},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.35094624757766724},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3371328115463257},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.24785926938056946},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2189461588859558},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16020557284355164},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000383","descriptor_name":"Agriculture","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000383","descriptor_name":"Agriculture","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000383","descriptor_name":"Agriculture","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000829","descriptor_name":"Animals, Domestic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000829","descriptor_name":"Animals, Domestic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000829","descriptor_name":"Animals, Domestic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002415","descriptor_name":"Cats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002415","descriptor_name":"Cats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002415","descriptor_name":"Cats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004285","descriptor_name":"Dogs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004285","descriptor_name":"Dogs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004285","descriptor_name":"Dogs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018556","descriptor_name":"Crops, Agricultural","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018556","descriptor_name":"Crops, Agricultural","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018556","descriptor_name":"Crops, Agricultural","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkq1115","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq1115","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:21075795","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21075795","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3013706","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3013706","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkq1115","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq1115","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.699999988079071,"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W201263205","https://openalex.org/W1236321187","https://openalex.org/W1524141331","https://openalex.org/W1972257067","https://openalex.org/W1987413827","https://openalex.org/W1990144966","https://openalex.org/W1992512552","https://openalex.org/W2011022979","https://openalex.org/W2019116625","https://openalex.org/W2021653707","https://openalex.org/W2047253404","https://openalex.org/W2067863596","https://openalex.org/W2075027317","https://openalex.org/W2080831082","https://openalex.org/W2090969569","https://openalex.org/W2091940856","https://openalex.org/W2093451145","https://openalex.org/W2096525273","https://openalex.org/W2096939566","https://openalex.org/W2098929214","https://openalex.org/W2102992354","https://openalex.org/W2115048111","https://openalex.org/W2116054833","https://openalex.org/W2116423958","https://openalex.org/W2121001818","https://openalex.org/W2123859786","https://openalex.org/W2124954099","https://openalex.org/W2141132558","https://openalex.org/W2154431984","https://openalex.org/W2158217645","https://openalex.org/W2164154943","https://openalex.org/W2166361106","https://openalex.org/W2167207850","https://openalex.org/W2167797060","https://openalex.org/W2168340032","https://openalex.org/W2168424584","https://openalex.org/W2171030481","https://openalex.org/W2276605232","https://openalex.org/W2772934464","https://openalex.org/W4211208250","https://openalex.org/W4231041617","https://openalex.org/W4239177987"],"related_works":["https://openalex.org/W2059565715","https://openalex.org/W1999129612","https://openalex.org/W2162782320","https://openalex.org/W2009940763","https://openalex.org/W3111061871","https://openalex.org/W1760213857","https://openalex.org/W110079389","https://openalex.org/W2099626126","https://openalex.org/W2043778888","https://openalex.org/W45826765"],"abstract_inverted_index":{"AgBase":[0,116,176],"(http://www.agbase.msstate.edu/)":[1],"provides":[2,88],"resources":[3,163],"to":[4,29,63,76,171],"facilitate":[5],"modeling":[6],"of":[7,16,34,84,130],"functional":[8,14,91,142],"genomics":[9,143],"data":[10],"and":[11,13,22,32,52,100,120,150,167],"structural":[12],"annotation":[15,92,106],"agriculturally":[17],"important":[18],"animal,":[19],"plant,":[20],"microbe":[21],"parasite":[23],"genomes.":[24],"The":[25,112],"website":[26],"is":[27],"redesigned":[28],"improve":[30],"accessibility":[31],"ease":[33],"use,":[35],"including":[36,72],"improved":[37,124],"search":[38],"capabilities.":[39],"Expanded":[40],"capabilities":[41],"include":[42],"new":[43,132],"dedicated":[44],"pages":[45],"for":[46,98,108,154],"horse,":[47],"cat,":[48],"dog,":[49],"cotton,":[50],"rice":[51],"soybean.":[53],"We":[54,145],"currently":[55],"provide":[56,102,151,160],"590":[57],"240":[58],"Gene":[59],"Ontology":[60],"(GO)":[61],"annotations":[62,74,95],"105":[64],"454":[65],"gene":[66],"products":[67],"in":[68],"64":[69],"different":[70,110],"species,":[71],"GO":[73,94,105],"linked":[75],"transcripts":[77],"represented":[78],"on":[79],"agricultural":[80,156],"microarrays.":[81],"For":[82],"many":[83],"these":[85],"arrays,":[86],"this":[87],"the":[89,175],"only":[90],"available.":[93],"are":[96],"available":[97,114,134],"download":[99],"we":[101,159],"comprehensive,":[103],"species-specific":[104],"files":[107],"18":[109],"organisms.":[111],"tools":[113,123,133],"at":[115,135,174],"have":[117],"been":[118],"expanded":[119],"several":[121,147],"existing":[122],"based":[125],"upon":[126],"user":[127],"feedback.":[128],"One":[129],"seven":[131],"AgBase,":[136],"GOModeler,":[137],"supports":[138],"hypothesis":[139],"testing":[140],"from":[141],"data.":[144],"host":[146],"associated":[148],"databases":[149],"genome":[152],"browsers":[153],"three":[155],"pathogens.":[157],"Moreover,":[158],"comprehensive":[161],"training":[162],"(including":[164],"worked":[165],"examples":[166],"tutorials)":[168],"via":[169],"links":[170],"Educational":[172],"Resources":[173],"website.":[177]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":10},{"year":2014,"cited_by_count":9},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":5}],"updated_date":"2026-06-26T08:34:08.712188","created_date":"2025-10-10T00:00:00"}
