{"id":"https://openalex.org/W2024812560","doi":"https://doi.org/10.1093/nar/gkq1109","title":"PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions","display_name":"PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions","publication_year":2010,"publication_date":"2010-11-12","ids":{"openalex":"https://openalex.org/W2024812560","doi":"https://doi.org/10.1093/nar/gkq1109","mag":"2024812560","pmid":"https://pubmed.ncbi.nlm.nih.gov/21075798"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkq1109","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq1109","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_1/D556/7630136/gkq1109.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/39/suppl_1/D556/7630136/gkq1109.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050318013","display_name":"Jaime Huerta\u2010Cepas","orcid":"https://orcid.org/0000-0003-4195-5025"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"J. Huerta-Cepas","raw_affiliation_strings":["Bioinformatics and Genomics Programme, Centre de Regulaci\u00f3 Gen\u00f2mica, 08003 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Genomics Programme, Centre de Regulaci\u00f3 Gen\u00f2mica, 08003 Barcelona, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059757648","display_name":"Salvador Capella-Guti\u00e9rrez","orcid":"https://orcid.org/0000-0002-0309-604X"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"S. Capella-Gutierrez","raw_affiliation_strings":["Bioinformatics and Genomics Programme. Centre de Regulaci\u00f3 Gen\u00f2mica. Doctor Aiguader, 88. 08003 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Genomics Programme. Centre de Regulaci\u00f3 Gen\u00f2mica. Doctor Aiguader, 88. 08003 Barcelona, Spain","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052534041","display_name":"Leszek P. Pryszcz","orcid":"https://orcid.org/0000-0003-0790-067X"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"L. P. Pryszcz","raw_affiliation_strings":["Bioinformatics and Genomics Programme. Centre de Regulaci\u00f3 Gen\u00f2mica. Doctor Aiguader, 88. 08003 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Genomics Programme. Centre de Regulaci\u00f3 Gen\u00f2mica. Doctor Aiguader, 88. 08003 Barcelona, Spain","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051466563","display_name":"\u0418\u0432\u0430\u043d \u0410. \u0414\u0435\u043d\u0438\u0441\u043e\u0432","orcid":"https://orcid.org/0000-0002-6647-9275"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"I. Denisov","raw_affiliation_strings":["Bioinformatics and Genomics Programme. Centre de Regulaci\u00f3 Gen\u00f2mica. Doctor Aiguader, 88. 08003 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Genomics Programme. Centre de Regulaci\u00f3 Gen\u00f2mica. Doctor Aiguader, 88. 08003 Barcelona, Spain","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5097005993","display_name":"D. Kormes","orcid":null},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"D. Kormes","raw_affiliation_strings":["Bioinformatics and Genomics Programme. Centre de Regulaci\u00f3 Gen\u00f2mica. Doctor Aiguader, 88. 08003 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Genomics Programme. Centre de Regulaci\u00f3 Gen\u00f2mica. Doctor Aiguader, 88. 08003 Barcelona, Spain","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064295564","display_name":"Marina Marcet\u2010Houben","orcid":"https://orcid.org/0000-0003-4838-187X"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"M. Marcet-Houben","raw_affiliation_strings":["Bioinformatics and Genomics Programme. Centre de Regulaci\u00f3 Gen\u00f2mica. Doctor Aiguader, 88. 08003 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Genomics Programme. Centre de Regulaci\u00f3 Gen\u00f2mica. Doctor Aiguader, 88. 08003 Barcelona, Spain","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003394700","display_name":"Toni Gabald\u00f3n","orcid":"https://orcid.org/0000-0003-0019-1735"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"T. Gabaldon","raw_affiliation_strings":["Bioinformatics and Genomics Programme. Centre de Regulaci\u00f3 Gen\u00f2mica. Doctor Aiguader, 88. 08003 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Genomics Programme. Centre de Regulaci\u00f3 Gen\u00f2mica. Doctor Aiguader, 88. 08003 Barcelona, Spain","institution_ids":["https://openalex.org/I4210137962"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5050318013"],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":6.0799,"has_fulltext":true,"cited_by_count":148,"citation_normalized_percentile":{"value":0.97207072,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"39","issue":"Database","first_page":"D556","last_page":"D560"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.972000002861023,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9666000008583069,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.905750036239624},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7914265394210815},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.7593254446983337},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.7147188186645508},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5383011698722839},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"Comparative genomics","score":0.5117523670196533},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.425967812538147},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.4154212474822998},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3990635573863983},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3871609568595886}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.905750036239624},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7914265394210815},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.7593254446983337},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.7147188186645508},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5383011698722839},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.5117523670196533},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.425967812538147},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4154212474822998},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3990635573863983},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3871609568595886}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkq1109","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq1109","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_1/D556/7630136/gkq1109.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:21075798","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21075798","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3013701","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3013701","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkq1109","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq1109","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_1/D556/7630136/gkq1109.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.6700000166893005}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2024812560.pdf","grobid_xml":"https://content.openalex.org/works/W2024812560.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W118013854","https://openalex.org/W629470861","https://openalex.org/W1691715559","https://openalex.org/W1966370340","https://openalex.org/W1979615468","https://openalex.org/W1993038297","https://openalex.org/W1994547959","https://openalex.org/W2002042808","https://openalex.org/W2003001917","https://openalex.org/W2015267435","https://openalex.org/W2028265997","https://openalex.org/W2029833898","https://openalex.org/W2056568233","https://openalex.org/W2058815839","https://openalex.org/W2079213755","https://openalex.org/W2085249999","https://openalex.org/W2087064593","https://openalex.org/W2115888213","https://openalex.org/W2117059491","https://openalex.org/W2118059471","https://openalex.org/W2119501380","https://openalex.org/W2120428260","https://openalex.org/W2121669452","https://openalex.org/W2127660113","https://openalex.org/W2132023322","https://openalex.org/W2132926880","https://openalex.org/W2138369959","https://openalex.org/W2143592941","https://openalex.org/W2148047088","https://openalex.org/W2150471837","https://openalex.org/W2155320525","https://openalex.org/W2159500193","https://openalex.org/W2162327194","https://openalex.org/W2167455933","https://openalex.org/W2168358356","https://openalex.org/W2772934464","https://openalex.org/W4211208250","https://openalex.org/W4297073864"],"related_works":["https://openalex.org/W2174809885","https://openalex.org/W2883025420","https://openalex.org/W2057191541","https://openalex.org/W2949296710","https://openalex.org/W1992658754","https://openalex.org/W2111939425","https://openalex.org/W2065083790","https://openalex.org/W2604174992","https://openalex.org/W2375383082","https://openalex.org/W1974895455"],"abstract_inverted_index":{"The":[0,115],"growing":[1],"availability":[2],"of":[3,23,26,35,44,110,118,133,189],"complete":[4],"genomic":[5],"sequences":[6],"from":[7,104],"diverse":[8],"species":[9,138,155],"has":[10,120],"brought":[11],"about":[12,78],"the":[13,21,32,51,94,131,158,164,182,187,190],"need":[14],"to":[15],"scale":[16],"up":[17],"phylogenomic":[18],"analyses,":[19],"including":[20,130],"reconstruction":[22,188],"large":[24],"collections":[25,43],"phylogenetic":[27,53,101],"trees.":[28],"Here,":[29],"we":[30],"present":[31],"third":[33],"version":[34,117],"PhylomeDB":[36,49,170],"(http://phylomeDB.org),":[37],"a":[38,68,91,193],"public":[39],"database":[40,95],"for":[41,71],"genome-wide":[42],"gene":[45,89],"phylogenies":[46],"(phylomes).":[47],"Currently,":[48],"is":[50,66,171],"largest":[52],"repository":[54],"and":[55,62,74,98,107,112,127],"hosts":[56],"17":[57],"phylomes,":[58],"comprising":[59],"416,093":[60],"trees":[61,102],"165,840":[63],"alignments.":[64],"It":[65],"also":[67,152],"major":[69],"source":[70],"phylogeny-based":[72,108],"orthology":[73,111],"paralogy":[75,113],"predictions,":[76],"covering":[77],"5":[79],"million":[80],"proteins":[81],"in":[82,90],"717":[83],"fully-sequenced":[84],"genomes.":[85],"For":[86],"each":[87],"protein-coding":[88],"seed":[92,137],"genome,":[93],"provides":[96,196],"original":[97],"processed":[99],"alignments,":[100],"derived":[103],"various":[105],"methods":[106],"predictions":[109],"relationships.":[114],"new":[116],"phylomeDB":[119],"been":[121],"extended":[122],"with":[123,186],"novel":[124],"data":[125],"access":[126],"visualization":[128],"features,":[129],"possibility":[132],"programmatic":[134],"access.":[135],"Available":[136],"include":[139],"model":[140,154],"organisms":[141],"such":[142,156],"as":[143,157],"human,":[144],"yeast,":[145],"Escherichia":[146],"coli":[147],"or":[148,163],"Arabidopsis":[149],"thaliana,":[150],"but":[151],"alternative":[153],"human":[159],"pathogen":[160],"Candida":[161],"albicans,":[162],"pea":[165],"aphid":[166],"Acyrtosiphon":[167],"pisum.":[168],"Finally,":[169],"currently":[172],"being":[173],"used":[174],"by":[175],"several":[176],"genome":[177,183],"sequencing":[178],"projects":[179],"that":[180,195],"couple":[181],"annotation":[184],"process":[185],"corresponding":[191],"phylome,":[192],"strategy":[194],"relevant":[197],"evolutionary":[198],"insights.":[199]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":18},{"year":2015,"cited_by_count":22},{"year":2014,"cited_by_count":23},{"year":2013,"cited_by_count":19},{"year":2012,"cited_by_count":17}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}