{"id":"https://openalex.org/W2095046041","doi":"https://doi.org/10.1093/nar/gkq1068","title":"PCRPi - DB: a database of computationally annotated hot spots in protein interfaces","display_name":"PCRPi - DB: a database of computationally annotated hot spots in protein interfaces","publication_year":2010,"publication_date":"2010-11-18","ids":{"openalex":"https://openalex.org/W2095046041","doi":"https://doi.org/10.1093/nar/gkq1068","mag":"2095046041","pmid":"https://pubmed.ncbi.nlm.nih.gov/21097468"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkq1068","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq1068","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_1/D755/18785550/gkq1068.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/39/suppl_1/D755/18785550/gkq1068.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007270631","display_name":"Joan Segura","orcid":"https://orcid.org/0000-0001-5593-735X"},"institutions":[{"id":"https://openalex.org/I2801331674","display_name":"St James's University Hospital","ror":"https://ror.org/013s89d74","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2799390153","https://openalex.org/I2801331674"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Joan Segura","raw_affiliation_strings":["Section of Experimental Therapeutics, Leeds Institute of Molecular Medicine, St James's University Hospital, University of Leeds, Leeds LS9 7TF, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Section of Experimental Therapeutics, Leeds Institute of Molecular Medicine, St James's University Hospital, University of Leeds, Leeds LS9 7TF, UK","institution_ids":["https://openalex.org/I2801331674"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090989775","display_name":"Narc\u00eds Fern\u00e1ndez\u2010Fuentes","orcid":"https://orcid.org/0000-0002-6421-1080"},"institutions":[{"id":"https://openalex.org/I130828816","display_name":"University of Leeds","ror":"https://ror.org/024mrxd33","country_code":"GB","type":"education","lineage":["https://openalex.org/I130828816"]},{"id":"https://openalex.org/I2801331674","display_name":"St James's University Hospital","ror":"https://ror.org/013s89d74","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2799390153","https://openalex.org/I2801331674"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Narcis Fernandez-Fuentes","raw_affiliation_strings":["Leeds Institute of Molecular Medicine , Section of Experimental Therapeutics , St James's University Hospital ,","University of Leeds , Leeds , LS9 7TF , UK","Leeds Institute of Molecular Medicine, Section of Experimental Therapeutics, St James's University Hospital, University of Leeds, Leeds, LS9 7TF, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leeds Institute of Molecular Medicine , Section of Experimental Therapeutics , St James's University Hospital ,","institution_ids":["https://openalex.org/I2801331674"]},{"raw_affiliation_string":"University of Leeds , Leeds , LS9 7TF , UK","institution_ids":["https://openalex.org/I130828816"]},{"raw_affiliation_string":"Leeds Institute of Molecular Medicine, Section of Experimental Therapeutics, St James's University Hospital, University of Leeds, Leeds, LS9 7TF, UK","institution_ids":["https://openalex.org/I2801331674"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.6226,"has_fulltext":true,"cited_by_count":20,"citation_normalized_percentile":{"value":0.66914468,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"39","issue":"suppl_1","first_page":"D755","last_page":"D760"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9889000058174133,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.6751367449760437},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.6456266641616821},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6060925722122192},{"id":"https://openalex.org/keywords/hot-spot","display_name":"Hot spot (computer programming)","score":0.5815646648406982},{"id":"https://openalex.org/keywords/spots","display_name":"Spots","score":0.4257940948009491},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.42316934466362},{"id":"https://openalex.org/keywords/protein-structure-database","display_name":"Protein structure database","score":0.4187435805797577},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3653549551963806},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3621804118156433},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2968473434448242},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.14199227094650269},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10796168446540833}],"concepts":[{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.6751367449760437},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.6456266641616821},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6060925722122192},{"id":"https://openalex.org/C199672914","wikidata":"https://www.wikidata.org/wiki/Q4241353","display_name":"Hot spot (computer programming)","level":2,"score":0.5815646648406982},{"id":"https://openalex.org/C2781255879","wikidata":"https://www.wikidata.org/wiki/Q7580087","display_name":"Spots","level":2,"score":0.4257940948009491},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.42316934466362},{"id":"https://openalex.org/C136475424","wikidata":"https://www.wikidata.org/wiki/Q7251500","display_name":"Protein structure database","level":4,"score":0.4187435805797577},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3653549551963806},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3621804118156433},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2968473434448242},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.14199227094650269},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10796168446540833},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001618","descriptor_name":"beta-Lactamases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001618","descriptor_name":"beta-Lactamases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001618","descriptor_name":"beta-Lactamases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046912","descriptor_name":"Multiprotein Complexes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D046912","descriptor_name":"Multiprotein Complexes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D046912","descriptor_name":"Multiprotein Complexes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkq1068","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq1068","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_1/D755/18785550/gkq1068.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:21097468","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21097468","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3013674","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3013674","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:aber.ac.uk:publications/3de85cda-381d-4d44-94b7-965a2b4b01ad","is_oa":false,"landing_page_url":"http://hdl.handle.net/2160/8990","pdf_url":null,"source":{"id":"https://openalex.org/S4306401660","display_name":"Aberystwyth Research portal (Aberystwyth University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I16038530","host_organization_name":"Aberystwyth University","host_organization_lineage":["https://openalex.org/I16038530"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":{"id":"doi:10.1093/nar/gkq1068","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq1068","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_1/D755/18785550/gkq1068.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2095046041.pdf","grobid_xml":"https://content.openalex.org/works/W2095046041.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1508596864","https://openalex.org/W1625079248","https://openalex.org/W2026370952","https://openalex.org/W2047544230","https://openalex.org/W2055043387","https://openalex.org/W2056169996","https://openalex.org/W2058527555","https://openalex.org/W2065711381","https://openalex.org/W2106648157","https://openalex.org/W2107903949","https://openalex.org/W2117077088","https://openalex.org/W2123009167","https://openalex.org/W2140796306","https://openalex.org/W2151550848","https://openalex.org/W2159080219","https://openalex.org/W2161732286","https://openalex.org/W2165319219"],"related_works":["https://openalex.org/W1997967488","https://openalex.org/W2618286804","https://openalex.org/W2593833119","https://openalex.org/W2329643025","https://openalex.org/W2224840501","https://openalex.org/W3131163342","https://openalex.org/W2088052375","https://openalex.org/W2166271660","https://openalex.org/W4311446160","https://openalex.org/W2045240459"],"abstract_inverted_index":{"Protein-protein":[0],"interactions":[1],"are":[2,13,130],"central":[3],"to":[4,32,105,124,132],"almost":[5],"any":[6],"cellular":[7],"process.":[8],"Although":[9],"typically":[10],"protein":[11,54,75],"interfaces":[12],"large,":[14],"it":[15],"is":[16,38,64,82,102,135],"well":[17],"established":[18],"that":[19,68],"only":[20],"a":[21,39,65,90,138],"relatively":[22],"small":[23],"region,":[24],"the":[25,30,33,79,99,106,115,118],"so-called":[26],"'hot":[27],"spot',":[28],"contributes":[29],"most":[31],"total":[34],"binding":[35],"energy.":[36],"There":[37],"clear":[40],"interest":[41],"in":[42,50,59,74,98],"identifying":[43],"hot":[44,72],"spots":[45,73,85],"because":[46],"of":[47,117],"its":[48],"application":[49],"drug":[51],"discovery":[52],"and":[53,92,113,122,128],"design.":[55],"Presaging":[56],"Critical":[57],"Residues":[58],"Protein":[60],"Interfaces":[61],"Database":[62],"(PCRPi-DB)":[63],"public":[66],"repository":[67],"archives":[69],"computationally":[70],"annotated":[71,88],"complexes":[76],"for":[77],"which":[78],"3D":[80],"structure":[81],"known.":[83],"Hot":[84],"have":[86],"been":[87],"using":[89],"new":[91],"highly":[93],"accurate":[94],"computational":[95],"method":[96],"developed":[97],"lab.":[100],"PCRPi-DB":[101,134],"freely":[103],"available":[104,131],"scientific":[107],"community":[108],"at":[109],"http://www.bioinsilico.org/PCRPIDB.":[110],"Besides":[111],"browsing":[112],"querying":[114],"contents":[116,129],"database,":[119],"extensive":[120],"documentation":[121],"links":[123],"relevant":[125],"on-line":[126],"resources":[127],"users.":[133],"updated":[136],"on":[137],"weekly":[139],"basis.":[140]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":5}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
