{"id":"https://openalex.org/W2133482775","doi":"https://doi.org/10.1093/nar/gkq1013","title":"PhEVER: a database for the global exploration of virus\u2013host evolutionary relationships","display_name":"PhEVER: a database for the global exploration of virus\u2013host evolutionary relationships","publication_year":2010,"publication_date":"2010-11-16","ids":{"openalex":"https://openalex.org/W2133482775","doi":"https://doi.org/10.1093/nar/gkq1013","mag":"2133482775","pmid":"https://pubmed.ncbi.nlm.nih.gov/21081560"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkq1013","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq1013","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_1/D569/18784692/gkq1013.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/39/suppl_1/D569/18784692/gkq1013.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069139965","display_name":"L\u00e9onor Palmeira","orcid":"https://orcid.org/0009-0004-8750-6692"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I157674565","display_name":"University of Li\u00e8ge","ror":"https://ror.org/00afp2z80","country_code":"BE","type":"education","lineage":["https://openalex.org/I157674565"]}],"countries":["BE","FR"],"is_corresponding":true,"raw_author_name":"Leonor Palmeira","raw_affiliation_strings":["CNRS, UMR5558, Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, PRABI, P\u00f4le Rh\u00f4ne-Alpes de Bioinformatique, F-69622, Villeurbanne, France. mlpalmeira@ulg.ac.be","Universit\u00e9 de Li\u00e8ge - ULg >  > Immunologie et vaccinologie >"],"affiliations":[{"raw_affiliation_string":"CNRS, UMR5558, Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, PRABI, P\u00f4le Rh\u00f4ne-Alpes de Bioinformatique, F-69622, Villeurbanne, France. mlpalmeira@ulg.ac.be","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Universit\u00e9 de Li\u00e8ge - ULg >  > Immunologie et vaccinologie >","institution_ids":["https://openalex.org/I157674565"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005165880","display_name":"Simon Penel","orcid":"https://orcid.org/0000-0003-1550-5477"},"institutions":[{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Simon Penel","raw_affiliation_strings":["Laboratoire de Biom\u00e9trie et Biologie Evolutive - UMR 5558"],"affiliations":[{"raw_affiliation_string":"Laboratoire de Biom\u00e9trie et Biologie Evolutive - UMR 5558","institution_ids":["https://openalex.org/I4210135640"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063071277","display_name":"Vincent Lotteau","orcid":"https://orcid.org/0000-0003-0997-3282"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vincent Lotteau","raw_affiliation_strings":["Immunit\u00e9 infection vaccination"],"affiliations":[{"raw_affiliation_string":"Immunit\u00e9 infection vaccination","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049360904","display_name":"Chantal Rabourdin\u2010Combe","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chantal Rabourdin-Combe","raw_affiliation_strings":["Immunit\u00e9 infection vaccination"],"affiliations":[{"raw_affiliation_string":"Immunit\u00e9 infection vaccination","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5106420208","display_name":"Christian Gautier","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Christian Gautier","raw_affiliation_strings":["An algorithmic view on genomes, cells, and environments"],"affiliations":[{"raw_affiliation_string":"An algorithmic view on genomes, cells, and environments","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5069139965"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I157674565","https://openalex.org/I4210135640"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.0,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.14422449,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"39","issue":"suppl_1","first_page":"D569","last_page":"D575"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8917266130447388},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7510755062103271},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.5722284317016602},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.5443331003189087},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5107288360595703},{"id":"https://openalex.org/keywords/adaptation","display_name":"Adaptation (eye)","score":0.48080912232398987},{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.47108709812164307},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.4475446939468384},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.4464437961578369},{"id":"https://openalex.org/keywords/viral-evolution","display_name":"Viral evolution","score":0.43109554052352905},{"id":"https://openalex.org/keywords/host-adaptation","display_name":"Host adaptation","score":0.41711312532424927},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4154379367828369},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.39055800437927246},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3807389438152313},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.34104156494140625}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8917266130447388},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7510755062103271},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.5722284317016602},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.5443331003189087},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5107288360595703},{"id":"https://openalex.org/C139807058","wikidata":"https://www.wikidata.org/wiki/Q352374","display_name":"Adaptation (eye)","level":2,"score":0.48080912232398987},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.47108709812164307},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.4475446939468384},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4464437961578369},{"id":"https://openalex.org/C8769409","wikidata":"https://www.wikidata.org/wiki/Q2066554","display_name":"Viral evolution","level":4,"score":0.43109554052352905},{"id":"https://openalex.org/C2776914050","wikidata":"https://www.wikidata.org/wiki/Q19597524","display_name":"Host adaptation","level":4,"score":0.41711312532424927},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4154379367828369},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.39055800437927246},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3807389438152313},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.34104156494140625},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.0},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005814","descriptor_name":"Genes, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005814","descriptor_name":"Genes, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005814","descriptor_name":"Genes, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017385","descriptor_name":"Sequence Homology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017385","descriptor_name":"Sequence Homology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017385","descriptor_name":"Sequence Homology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D022761","descriptor_name":"Gene Transfer, Horizontal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022761","descriptor_name":"Gene Transfer, Horizontal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022761","descriptor_name":"Gene Transfer, Horizontal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkq1013","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq1013","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_1/D569/18784692/gkq1013.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:21081560","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21081560","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:HAL:hal-00562509v1","is_oa":false,"landing_page_url":"https://hal.science/hal-00562509","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 2011, 39 (Database issue), pp.D569-75. &#x27E8;10.1093/nar/gkq1013&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:orbi.ulg.ac.be:2268/79082","is_oa":true,"landing_page_url":"https://orbi.uliege.be/handle/2268/79082","pdf_url":null,"source":{"id":"https://openalex.org/S4306400651","display_name":"Open Repository and Bibliography (University of Li\u00e8ge)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I157674565","host_organization_name":"University of Li\u00e8ge","host_organization_lineage":["https://openalex.org/I157674565"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research (2011-01)","raw_type":"peer reviewed"},{"id":"pmh:oai:pubmedcentral.nih.gov:3013642","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3013642","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkq1013","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq1013","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_1/D569/18784692/gkq1013.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320335860","display_name":"Institut National de Physique Nucl\u00e9aire et de Physique des Particules","ror":"https://ror.org/03fd77x13"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2133482775.pdf","grobid_xml":"https://content.openalex.org/works/W2133482775.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W83855287","https://openalex.org/W1513332069","https://openalex.org/W1570477334","https://openalex.org/W1878730940","https://openalex.org/W1963957860","https://openalex.org/W1971226151","https://openalex.org/W1981194976","https://openalex.org/W1990056477","https://openalex.org/W1990704414","https://openalex.org/W2000216814","https://openalex.org/W2013067928","https://openalex.org/W2017026835","https://openalex.org/W2017519756","https://openalex.org/W2017608260","https://openalex.org/W2030725254","https://openalex.org/W2031708534","https://openalex.org/W2035333716","https://openalex.org/W2055043387","https://openalex.org/W2059409345","https://openalex.org/W2073257790","https://openalex.org/W2083804674","https://openalex.org/W2089909578","https://openalex.org/W2096525273","https://openalex.org/W2100352148","https://openalex.org/W2103546861","https://openalex.org/W2112956791","https://openalex.org/W2114938008","https://openalex.org/W2132926880","https://openalex.org/W2136904768","https://openalex.org/W2138334294","https://openalex.org/W2141885858","https://openalex.org/W2148047088","https://openalex.org/W2149057166","https://openalex.org/W2152528032","https://openalex.org/W2161062388","https://openalex.org/W2243973145","https://openalex.org/W4210430020","https://openalex.org/W4210623056","https://openalex.org/W4211000692","https://openalex.org/W4231041617","https://openalex.org/W4246410145","https://openalex.org/W4285719527","https://openalex.org/W6603412123","https://openalex.org/W6654274760","https://openalex.org/W6654563908"],"related_works":["https://openalex.org/W2174809885","https://openalex.org/W2883025420","https://openalex.org/W2057191541","https://openalex.org/W2949296710","https://openalex.org/W1992658754","https://openalex.org/W2111939425","https://openalex.org/W2065083790","https://openalex.org/W2604174992","https://openalex.org/W2375383082","https://openalex.org/W1974895455"],"abstract_inverted_index":{"Fast":[0],"viral":[1,133,151,178],"adaptation":[2,55],"and":[3,43,47,71,75,100,109,130,135,165,184,200],"the":[4,11,35,52,66,78,90,105],"implication":[5],"of":[6,13,37,41,54,80,85,107,120,169,188],"this":[7,20],"rapid":[8],"evolution":[9],"in":[10,34,51,77],"emergence":[12],"several":[14],"new":[15],"infectious":[16],"diseases":[17],"have":[18],"turned":[19],"issue":[21],"into":[22,65,171],"a":[23,38,117,167],"major":[24],"challenge":[25],"for":[26,186],"various":[27],"research":[28],"domains.":[29],"Indeed,":[30],"viruses":[31,46,70,129],"are":[32],"involved":[33],"development":[36],"wide":[39],"range":[40],"pathologies":[42],"understanding":[44],"how":[45],"host":[48,73],"cells":[49],"interact":[50],"context":[53],"remains":[56],"an":[57],"open":[58],"question.":[59],"In":[60],"order":[61],"to":[62,103,163,193],"provide":[63],"insights":[64],"complex":[67],"interactions":[68],"between":[69,125,132],"their":[72],"organisms":[74],"namely":[76],"acquisition":[79],"novel":[81],"functions":[82],"through":[83,197,201],"exchanges":[84],"genetic":[86],"material,":[87],"we":[88],"developed":[89],"PhEVER":[91,114,140,194],"database.":[92],"This":[93],"database":[94,119],"aims":[95],"at":[96,175],"providing":[97],"accurate":[98],"evolutionary":[99],"phylogenetic":[101],"information":[102],"analyse":[104],"nature":[106],"virus-virus":[108],"virus-host":[110],"lateral":[111],"gene":[112],"transfers.":[113],"(http://pbil.univ-lyon1.fr/databases/phever)":[115],"is":[116,195],"unique":[118],"homologous":[121,172],"families":[122,173],"both":[123],"(i)":[124],"sequences":[126,134,136],"from":[127,137,144,161],"different":[128],"(ii)":[131],"cellular":[138],"organisms.":[139],"integrates":[141],"extensive":[142],"data":[143],"up-to-date":[145],"completely":[146],"sequenced":[147],"genomes":[148,159],"(2426":[149],"non-redundant":[150,154],"genomes,":[152,156],"1007":[153],"prokaryotic":[155],"43":[157],"eukaryotic":[158],"ranging":[160],"plants":[162],"vertebrates)":[164],"offers":[166],"clustering":[168],"proteins":[170],"containing":[174],"least":[176],"one":[177],"sequences,":[179],"as":[180,182],"well":[181],"alignments":[183],"phylogenies":[185],"each":[187],"these":[189],"families.":[190],"Public":[191],"access":[192],"available":[196],"its":[198],"webpage":[199],"all":[202],"dedicated":[203],"ACNUC":[204],"retrieval":[205],"systems.":[206]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2014,"cited_by_count":2}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
