{"id":"https://openalex.org/W2085869131","doi":"https://doi.org/10.1093/nar/gkp978","title":"PRGdb: a bioinformatics platform for plant resistance gene analysis","display_name":"PRGdb: a bioinformatics platform for plant resistance gene analysis","publication_year":2009,"publication_date":"2009-11-11","ids":{"openalex":"https://openalex.org/W2085869131","doi":"https://doi.org/10.1093/nar/gkp978","mag":"2085869131","pmid":"https://pubmed.ncbi.nlm.nih.gov/19906694"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkp978","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp978","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D814/11218343/gkp978.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D814/11218343/gkp978.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048534767","display_name":"Walter Sanseverino","orcid":"https://orcid.org/0000-0003-3324-5912"},"institutions":[{"id":"https://openalex.org/I4210167168","display_name":"Department of Agricultural Sciences","ror":"https://ror.org/05wtp9w08","country_code":"RU","type":"government","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210167168"]},{"id":"https://openalex.org/I71267560","display_name":"University of Naples Federico II","ror":"https://ror.org/05290cv24","country_code":"IT","type":"education","lineage":["https://openalex.org/I71267560"]}],"countries":["IT","RU"],"is_corresponding":true,"raw_author_name":"Walter Sanseverino","raw_affiliation_strings":["Department of Soil, Plant, Environmental and Animal Production Sciences, University of Naples 'Federico II', Via Universit\u00e0 100, 80055 Portici, Italy","Department of Soil, Plant, Environmental and Animal Production Sciences, University of Naples 'Federico II', Via Universita 100, 80055, Portici, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Soil, Plant, Environmental and Animal Production Sciences, University of Naples 'Federico II', Via Universit\u00e0 100, 80055 Portici, Italy","institution_ids":["https://openalex.org/I71267560"]},{"raw_affiliation_string":"Department of Soil, Plant, Environmental and Animal Production Sciences, University of Naples 'Federico II', Via Universita 100, 80055, Portici, Italy","institution_ids":["https://openalex.org/I4210167168"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013224356","display_name":"Guglielmo Roma","orcid":"https://orcid.org/0000-0002-8020-4219"},"institutions":[{"id":"https://openalex.org/I166337079","display_name":"Queen Mary University of London","ror":"https://ror.org/026zzn846","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I166337079"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES","GB"],"is_corresponding":false,"raw_author_name":"Guglielmo Roma","raw_affiliation_strings":["Center for Genomic Regulation, Dr Aiguader 88, 08003 Barcelona, Spain,","Queen Mary University of London, London, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Center for Genomic Regulation, Dr Aiguader 88, 08003 Barcelona, Spain,","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"Queen Mary University of London, London, United Kingdom","institution_ids":["https://openalex.org/I166337079"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011035178","display_name":"Marco De Simone","orcid":"https://orcid.org/0000-0002-7593-8314"},"institutions":[{"id":"https://openalex.org/I166337079","display_name":"Queen Mary University of London","ror":"https://ror.org/026zzn846","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I166337079"]},{"id":"https://openalex.org/I2801626668","display_name":"AREA Science Park","ror":"https://ror.org/01dt7qh15","country_code":"IT","type":"facility","lineage":["https://openalex.org/I2801626668"]}],"countries":["GB","IT"],"is_corresponding":false,"raw_author_name":"Marco De Simone","raw_affiliation_strings":["CBM S.c.r.l., Area Science Park, 34012 Trieste, Italy,","Queen Mary University of London, London, United Kingdom"],"affiliations":[{"raw_affiliation_string":"CBM S.c.r.l., Area Science Park, 34012 Trieste, Italy,","institution_ids":["https://openalex.org/I2801626668"]},{"raw_affiliation_string":"Queen Mary University of London, London, United Kingdom","institution_ids":["https://openalex.org/I166337079"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001241582","display_name":"Luigi Faino","orcid":"https://orcid.org/0000-0002-6807-4191"},"institutions":[{"id":"https://openalex.org/I166337079","display_name":"Queen Mary University of London","ror":"https://ror.org/026zzn846","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I166337079"]},{"id":"https://openalex.org/I4210167168","display_name":"Department of Agricultural Sciences","ror":"https://ror.org/05wtp9w08","country_code":"RU","type":"government","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210167168"]}],"countries":["GB","RU"],"is_corresponding":false,"raw_author_name":"Luigi Faino","raw_affiliation_strings":["Department of Soil, Plant, Environmental and Animal Production Sciences, University of Naples 'Federico II', Via Universita `100, 80055 Portici, Italy,","Queen Mary University of London, London, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Department of Soil, Plant, Environmental and Animal Production Sciences, University of Naples 'Federico II', Via Universita `100, 80055 Portici, Italy,","institution_ids":["https://openalex.org/I4210167168"]},{"raw_affiliation_string":"Queen Mary University of London, London, United Kingdom","institution_ids":["https://openalex.org/I166337079"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002350843","display_name":"Sara Melito","orcid":"https://orcid.org/0000-0002-4910-2353"},"institutions":[{"id":"https://openalex.org/I166337079","display_name":"Queen Mary University of London","ror":"https://ror.org/026zzn846","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I166337079"]},{"id":"https://openalex.org/I4210167168","display_name":"Department of Agricultural Sciences","ror":"https://ror.org/05wtp9w08","country_code":"RU","type":"government","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210167168"]}],"countries":["GB","RU"],"is_corresponding":false,"raw_author_name":"Sara Melito","raw_affiliation_strings":["Department of Soil, Plant, Environmental and Animal Production Sciences, University of Naples 'Federico II', Via Universita `100, 80055 Portici, Italy,","Queen Mary University of London, London, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Department of Soil, Plant, Environmental and Animal Production Sciences, University of Naples 'Federico II', Via Universita `100, 80055 Portici, Italy,","institution_ids":["https://openalex.org/I4210167168"]},{"raw_affiliation_string":"Queen Mary University of London, London, United Kingdom","institution_ids":["https://openalex.org/I166337079"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090923781","display_name":"Elia Stupka","orcid":"https://orcid.org/0000-0003-3154-4011"},"institutions":[{"id":"https://openalex.org/I166337079","display_name":"Queen Mary University of London","ror":"https://ror.org/026zzn846","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I166337079"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Elia Stupka","raw_affiliation_strings":["Queen Mary University of London, London, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Queen Mary University of London, London, United Kingdom","institution_ids":["https://openalex.org/I166337079"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056041593","display_name":"Luigi Frusciante","orcid":null},"institutions":[{"id":"https://openalex.org/I166337079","display_name":"Queen Mary University of London","ror":"https://ror.org/026zzn846","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I166337079"]},{"id":"https://openalex.org/I4210167168","display_name":"Department of Agricultural Sciences","ror":"https://ror.org/05wtp9w08","country_code":"RU","type":"government","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210167168"]}],"countries":["GB","RU"],"is_corresponding":false,"raw_author_name":"Luigi Frusciante","raw_affiliation_strings":["Department of Soil, Plant, Environmental and Animal Production Sciences, University of Naples 'Federico II', Via Universita `100, 80055 Portici, Italy,","Queen Mary University of London, London, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Department of Soil, Plant, Environmental and Animal Production Sciences, University of Naples 'Federico II', Via Universita `100, 80055 Portici, Italy,","institution_ids":["https://openalex.org/I4210167168"]},{"raw_affiliation_string":"Queen Mary University of London, London, United Kingdom","institution_ids":["https://openalex.org/I166337079"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006674375","display_name":"Maria Raffaella Ercolano","orcid":"https://orcid.org/0000-0002-4475-6112"},"institutions":[{"id":"https://openalex.org/I166337079","display_name":"Queen Mary University of London","ror":"https://ror.org/026zzn846","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I166337079"]},{"id":"https://openalex.org/I4210167168","display_name":"Department of Agricultural Sciences","ror":"https://ror.org/05wtp9w08","country_code":"RU","type":"government","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210167168"]}],"countries":["GB","RU"],"is_corresponding":false,"raw_author_name":"Maria Raffaella Ercolano","raw_affiliation_strings":["Department of Soil, Plant, Environmental and Animal Production Sciences, University of Naples 'Federico II', Via Universita `100, 80055 Portici, Italy,","Queen Mary University of London, London, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Department of Soil, Plant, Environmental and Animal Production Sciences, University of Naples 'Federico II', Via Universita `100, 80055 Portici, Italy,","institution_ids":["https://openalex.org/I4210167168"]},{"raw_affiliation_string":"Queen Mary University of London, London, United Kingdom","institution_ids":["https://openalex.org/I166337079"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5048534767"],"corresponding_institution_ids":["https://openalex.org/I4210167168","https://openalex.org/I71267560"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":12.2339,"has_fulltext":true,"cited_by_count":184,"citation_normalized_percentile":{"value":0.9850155,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"38","issue":"suppl_1","first_page":"D814","last_page":"D821"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12858","display_name":"Plant Disease Resistance and Genetics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11578","display_name":"Plant Pathogenic Bacteria Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/unigene","display_name":"UniGene","score":0.8815001845359802},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8311253786087036},{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.680271327495575},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6774712800979614},{"id":"https://openalex.org/keywords/refseq","display_name":"RefSeq","score":0.5312519073486328},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5158706903457642},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5062795877456665},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5025379657745361},{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.48834463953971863},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4680079519748688},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.41818055510520935},{"id":"https://openalex.org/keywords/gene-nomenclature","display_name":"Gene nomenclature","score":0.41574737429618835},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4154047966003418},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3285824656486511},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.3258841633796692},{"id":"https://openalex.org/keywords/expressed-sequence-tag","display_name":"Expressed sequence tag","score":0.273170530796051},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.19137844443321228}],"concepts":[{"id":"https://openalex.org/C2780330800","wikidata":"https://www.wikidata.org/wiki/Q7884647","display_name":"UniGene","level":5,"score":0.8815001845359802},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8311253786087036},{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.680271327495575},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6774712800979614},{"id":"https://openalex.org/C151810110","wikidata":"https://www.wikidata.org/wiki/Q7307074","display_name":"RefSeq","level":4,"score":0.5312519073486328},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5158706903457642},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5062795877456665},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5025379657745361},{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.48834463953971863},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4680079519748688},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.41818055510520935},{"id":"https://openalex.org/C62177273","wikidata":"https://www.wikidata.org/wiki/Q5531556","display_name":"Gene nomenclature","level":4,"score":0.41574737429618835},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4154047966003418},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3285824656486511},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3258841633796692},{"id":"https://openalex.org/C149034497","wikidata":"https://www.wikidata.org/wiki/Q1384835","display_name":"Expressed sequence tag","level":4,"score":0.273170530796051},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.19137844443321228},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C55352822","wikidata":"https://www.wikidata.org/wiki/Q5558978","display_name":"Gibbs isotherm","level":3,"score":0.0},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.0},{"id":"https://openalex.org/C514705636","wikidata":"https://www.wikidata.org/wiki/Q863247","display_name":"Nomenclature","level":3,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C58226133","wikidata":"https://www.wikidata.org/wiki/Q1324199","display_name":"Pulmonary surfactant","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D010935","descriptor_name":"Plant Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010935","descriptor_name":"Plant Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010935","descriptor_name":"Plant Diseases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018384","descriptor_name":"Oxidative Stress","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018384","descriptor_name":"Oxidative Stress","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018384","descriptor_name":"Oxidative Stress","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1093/nar/gkp978","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp978","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D814/11218343/gkp978.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:19906694","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19906694","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.357.1202","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.357.1202","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/a5/01/Nucleic_Acids_Res_2010_Jan_38(Database_issue)_D814-D821.tar.gz","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.608.7652","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.608.7652","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2009/11/11/nar.gkp978.full.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.621.6691","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.621.6691","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2009/11/11/nar.gkp978.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:iris.uniroma1.it:11573/1056303","is_oa":false,"landing_page_url":"http://hdl.handle.net/11573/1056303","pdf_url":null,"source":{"id":"https://openalex.org/S4377196107","display_name":"IRIS Research product catalog (Sapienza University of Rome)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:open-archive.highwire.org:nar:38/suppl_1/D814","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/38/suppl_1/D814","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:2808903","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2808903","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkp978","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp978","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D814/11218343/gkp978.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320309590","display_name":"Universit\u00e0 degli Studi di Napoli Federico II","ror":"https://ror.org/05290cv24"},{"id":"https://openalex.org/F4320321873","display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca","ror":"https://ror.org/0166hxq48"},{"id":"https://openalex.org/F4320323286","display_name":"Ministero delle Politiche Agricole Alimentari e Forestali","ror":"https://ror.org/023kmpc59"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2085869131.pdf","grobid_xml":"https://content.openalex.org/works/W2085869131.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1489525341","https://openalex.org/W1968657024","https://openalex.org/W1973328229","https://openalex.org/W1974557838","https://openalex.org/W1978728468","https://openalex.org/W1985753192","https://openalex.org/W2000668831","https://openalex.org/W2028254759","https://openalex.org/W2040210770","https://openalex.org/W2049103996","https://openalex.org/W2050757906","https://openalex.org/W2067971481","https://openalex.org/W2085996172","https://openalex.org/W2096525273","https://openalex.org/W2099211368","https://openalex.org/W2100464143","https://openalex.org/W2104639053","https://openalex.org/W2113441838","https://openalex.org/W2116423958","https://openalex.org/W2117920589","https://openalex.org/W2120202106","https://openalex.org/W2124270664","https://openalex.org/W2124879678","https://openalex.org/W2140177375","https://openalex.org/W2141067630","https://openalex.org/W2142309556","https://openalex.org/W2150934173","https://openalex.org/W2154540205","https://openalex.org/W2155611044","https://openalex.org/W2156362263","https://openalex.org/W2156622081","https://openalex.org/W2160910949","https://openalex.org/W2162069196","https://openalex.org/W2162550105","https://openalex.org/W2166717297","https://openalex.org/W2167009782","https://openalex.org/W2168260910","https://openalex.org/W4235874578","https://openalex.org/W4250297812","https://openalex.org/W6682711587"],"related_works":["https://openalex.org/W2160073543","https://openalex.org/W2371635796","https://openalex.org/W3118378687","https://openalex.org/W4230762195","https://openalex.org/W2042690128","https://openalex.org/W1566829004","https://openalex.org/W2102374805","https://openalex.org/W2152960199","https://openalex.org/W2146014453","https://openalex.org/W1972257067"],"abstract_inverted_index":{"PRGdb":[0,24],"is":[1],"a":[2,15,53,75,159],"web":[3],"accessible":[4],"open-source":[5],"(http://www.prgdb.org)":[6],"database":[7,51,172],"that":[8],"represents":[9,138],"the":[10,135],"first":[11],"bioinformatic":[12],"resource":[13],"providing":[14],"comprehensive":[16],"overview":[17],"of":[18,55,134,162],"resistance":[19,110],"genes":[20,111],"(R-genes)":[21],"in":[22,112],"plants.":[23],"holds":[25],"more":[26],"than":[27],"16,000":[28],"known":[29],"and":[30,43,67,94,118,130,153,182],"putative":[31,62,71,121],"R-genes":[32,63],"belonging":[33],"to":[34,74,106,143,158,164,167],"192":[35],"plant":[36,109],"species":[37],"challenged":[38],"by":[39],"115":[40],"different":[41,83],"pathogens":[42],"linked":[44],"with":[45,178],"useful":[46],"biological":[47,169],"information.":[48],"The":[49,132,148,171],"complete":[50],"includes":[52],"set":[54],"73":[56],"manually":[57],"curated":[58],"reference":[59,100],"R-genes,":[60],"6308":[61],"collected":[64],"from":[65],"NCBI":[66],"10463":[68],"computationally":[69],"predicted":[70],"R-genes.":[72],"Thanks":[73],"user-friendly":[76],"interface,":[77],"data":[78,180],"can":[79],"be":[80],"examined":[81],"using":[82],"query":[84],"tools.":[85],"A":[86],"home-made":[87],"prediction":[88],"pipeline":[89],"called":[90],"Disease":[91],"Resistance":[92],"Analysis":[93],"Gene":[95],"Orthology":[96],"(DRAGO),":[97],"based":[98],"on":[99],"R-gene":[101,122],"sequence":[102],"data,":[103],"was":[104],"developed":[105],"search":[107],"for":[108,186],"public":[113],"datasets":[114],"such":[115],"as":[116],"Unigene":[117],"Genbank.":[119],"New":[120],"classes":[123],"containing":[124],"unknown":[125],"domain":[126],"combinations":[127],"were":[128],"discovered":[129],"characterized.":[131],"development":[133],"PRG":[136],"platform":[137],"an":[139],"important":[140],"starting":[141],"point":[142],"conduct":[144],"various":[145],"experimental":[146],"tasks.":[147],"inferred":[149],"cross-link":[150],"between":[151],"genomic":[152],"phenotypic":[154],"information":[155,163],"allows":[156],"access":[157],"large":[160],"body":[161],"find":[165],"answers":[166],"several":[168],"questions.":[170],"structure":[173],"also":[174],"permits":[175],"easy":[176],"integration":[177],"other":[179],"types":[181],"opens":[183],"up":[184],"prospects":[185],"future":[187],"implementations.":[188]},"counts_by_year":[{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":13},{"year":2022,"cited_by_count":14},{"year":2021,"cited_by_count":15},{"year":2020,"cited_by_count":34},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":10},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":12},{"year":2013,"cited_by_count":13},{"year":2012,"cited_by_count":19}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
