{"id":"https://openalex.org/W2120061581","doi":"https://doi.org/10.1093/nar/gkp969","title":"PLANdbAffy: probe-level annotation database for Affymetrix expression microarrays","display_name":"PLANdbAffy: probe-level annotation database for Affymetrix expression microarrays","publication_year":2009,"publication_date":"2009-11-10","ids":{"openalex":"https://openalex.org/W2120061581","doi":"https://doi.org/10.1093/nar/gkp969","mag":"2120061581","pmid":"https://pubmed.ncbi.nlm.nih.gov/19906711"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkp969","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp969","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D726/11218313/gkp969.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D726/11218313/gkp969.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056443509","display_name":"Ramil Nurtdinov","orcid":"https://orcid.org/0000-0002-9753-6287"},"institutions":[{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]}],"countries":["RU"],"is_corresponding":true,"raw_author_name":"Ramil N. Nurtdinov","raw_affiliation_strings":["Departament of Bioengineering and Bioinformatics, MV Lomonosov Moscow State University, Vorbyevy Gory 1-73, Moscow 119992, Russia. ramil@bioinf.fbb.msu.ru","Departament of Bioengineering and Bioinformatics, MV Lomonosov Moscow State University, Vorbyevy Gory 1-73, Moscow 119992, Russia"],"affiliations":[{"raw_affiliation_string":"Departament of Bioengineering and Bioinformatics, MV Lomonosov Moscow State University, Vorbyevy Gory 1-73, Moscow 119992, Russia. ramil@bioinf.fbb.msu.ru","institution_ids":["https://openalex.org/I19880235"]},{"raw_affiliation_string":"Departament of Bioengineering and Bioinformatics, MV Lomonosov Moscow State University, Vorbyevy Gory 1-73, Moscow 119992, Russia","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032079541","display_name":"Mikhail O. Vasiliev","orcid":null},"institutions":[{"id":"https://openalex.org/I153845743","display_name":"Moscow Institute of Physics and Technology","ror":"https://ror.org/00v0z9322","country_code":"RU","type":"education","lineage":["https://openalex.org/I153845743"]},{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Mikhail O. Vasiliev","raw_affiliation_strings":["1Departament of Bioengineering and Bioinformatics, M.V. Lomonosov Moscow State University, Vorbyevy Gory 1-73, Moscow 119992, Russia, 2Moscow Institute of Physics and Technology, Institutskii per. 9, Dolgoprudny, Moscow Region 141700, 3Gamaleya Institute of Epidemiology and Microbiology Russian Academy of Medical Sciences, Gamaleya Street, 18, Moscow 123098, 4Institute of Agricultural Biotechnology, Russian Academy of Agricultural Sciences, Timiryazevskay Street 42, Moscow 127550, Russia, 5Parascript LLC, Winchester Circle 6899, Ste. 200, Boulder, CO 80301, USA and 6A.N. Belozersky Institute of Physical and Chemical Biology, Moscow State University, Leninskie Gory 1-40, Moscow 119991, Russia","Moscow Institute of Physics and Technology, Dolgoprudnyy, Russia"],"affiliations":[{"raw_affiliation_string":"1Departament of Bioengineering and Bioinformatics, M.V. Lomonosov Moscow State University, Vorbyevy Gory 1-73, Moscow 119992, Russia, 2Moscow Institute of Physics and Technology, Institutskii per. 9, Dolgoprudny, Moscow Region 141700, 3Gamaleya Institute of Epidemiology and Microbiology Russian Academy of Medical Sciences, Gamaleya Street, 18, Moscow 123098, 4Institute of Agricultural Biotechnology, Russian Academy of Agricultural Sciences, Timiryazevskay Street 42, Moscow 127550, Russia, 5Parascript LLC, Winchester Circle 6899, Ste. 200, Boulder, CO 80301, USA and 6A.N. Belozersky Institute of Physical and Chemical Biology, Moscow State University, Leninskie Gory 1-40, Moscow 119991, Russia","institution_ids":["https://openalex.org/I19880235","https://openalex.org/I153845743"]},{"raw_affiliation_string":"Moscow Institute of Physics and Technology, Dolgoprudnyy, Russia","institution_ids":["https://openalex.org/I153845743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009853627","display_name":"Anna S. Ershova","orcid":"https://orcid.org/0000-0002-1014-7677"},"institutions":[{"id":"https://openalex.org/I153845743","display_name":"Moscow Institute of Physics and Technology","ror":"https://ror.org/00v0z9322","country_code":"RU","type":"education","lineage":["https://openalex.org/I153845743"]},{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Anna S. Ershova","raw_affiliation_strings":["1Departament of Bioengineering and Bioinformatics, M.V. Lomonosov Moscow State University, Vorbyevy Gory 1-73, Moscow 119992, Russia, 2Moscow Institute of Physics and Technology, Institutskii per. 9, Dolgoprudny, Moscow Region 141700, 3Gamaleya Institute of Epidemiology and Microbiology Russian Academy of Medical Sciences, Gamaleya Street, 18, Moscow 123098, 4Institute of Agricultural Biotechnology, Russian Academy of Agricultural Sciences, Timiryazevskay Street 42, Moscow 127550, Russia, 5Parascript LLC, Winchester Circle 6899, Ste. 200, Boulder, CO 80301, USA and 6A.N. Belozersky Institute of Physical and Chemical Biology, Moscow State University, Leninskie Gory 1-40, Moscow 119991, Russia","Moscow Institute of Physics and Technology, Dolgoprudnyy, Russia"],"affiliations":[{"raw_affiliation_string":"1Departament of Bioengineering and Bioinformatics, M.V. Lomonosov Moscow State University, Vorbyevy Gory 1-73, Moscow 119992, Russia, 2Moscow Institute of Physics and Technology, Institutskii per. 9, Dolgoprudny, Moscow Region 141700, 3Gamaleya Institute of Epidemiology and Microbiology Russian Academy of Medical Sciences, Gamaleya Street, 18, Moscow 123098, 4Institute of Agricultural Biotechnology, Russian Academy of Agricultural Sciences, Timiryazevskay Street 42, Moscow 127550, Russia, 5Parascript LLC, Winchester Circle 6899, Ste. 200, Boulder, CO 80301, USA and 6A.N. Belozersky Institute of Physical and Chemical Biology, Moscow State University, Leninskie Gory 1-40, Moscow 119991, Russia","institution_ids":["https://openalex.org/I19880235","https://openalex.org/I153845743"]},{"raw_affiliation_string":"Moscow Institute of Physics and Technology, Dolgoprudnyy, Russia","institution_ids":["https://openalex.org/I153845743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004494105","display_name":"Ilia S. Lossev","orcid":null},"institutions":[{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]},{"id":"https://openalex.org/I153845743","display_name":"Moscow Institute of Physics and Technology","ror":"https://ror.org/00v0z9322","country_code":"RU","type":"education","lineage":["https://openalex.org/I153845743"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Ilia S. Lossev","raw_affiliation_strings":["1Departament of Bioengineering and Bioinformatics, M.V. Lomonosov Moscow State University, Vorbyevy Gory 1-73, Moscow 119992, Russia, 2Moscow Institute of Physics and Technology, Institutskii per. 9, Dolgoprudny, Moscow Region 141700, 3Gamaleya Institute of Epidemiology and Microbiology Russian Academy of Medical Sciences, Gamaleya Street, 18, Moscow 123098, 4Institute of Agricultural Biotechnology, Russian Academy of Agricultural Sciences, Timiryazevskay Street 42, Moscow 127550, Russia, 5Parascript LLC, Winchester Circle 6899, Ste. 200, Boulder, CO 80301, USA and 6A.N. Belozersky Institute of Physical and Chemical Biology, Moscow State University, Leninskie Gory 1-40, Moscow 119991, Russia","Moscow Institute of Physics and Technology, Dolgoprudnyy, Russia"],"affiliations":[{"raw_affiliation_string":"1Departament of Bioengineering and Bioinformatics, M.V. Lomonosov Moscow State University, Vorbyevy Gory 1-73, Moscow 119992, Russia, 2Moscow Institute of Physics and Technology, Institutskii per. 9, Dolgoprudny, Moscow Region 141700, 3Gamaleya Institute of Epidemiology and Microbiology Russian Academy of Medical Sciences, Gamaleya Street, 18, Moscow 123098, 4Institute of Agricultural Biotechnology, Russian Academy of Agricultural Sciences, Timiryazevskay Street 42, Moscow 127550, Russia, 5Parascript LLC, Winchester Circle 6899, Ste. 200, Boulder, CO 80301, USA and 6A.N. Belozersky Institute of Physical and Chemical Biology, Moscow State University, Leninskie Gory 1-40, Moscow 119991, Russia","institution_ids":["https://openalex.org/I19880235","https://openalex.org/I153845743"]},{"raw_affiliation_string":"Moscow Institute of Physics and Technology, Dolgoprudnyy, Russia","institution_ids":["https://openalex.org/I153845743"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019487567","display_name":"A. S. Karyagina","orcid":"https://orcid.org/0000-0002-2580-3489"},"institutions":[{"id":"https://openalex.org/I153845743","display_name":"Moscow Institute of Physics and Technology","ror":"https://ror.org/00v0z9322","country_code":"RU","type":"education","lineage":["https://openalex.org/I153845743"]},{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Anna S. Karyagina","raw_affiliation_strings":["1Departament of Bioengineering and Bioinformatics, M.V. Lomonosov Moscow State University, Vorbyevy Gory 1-73, Moscow 119992, Russia, 2Moscow Institute of Physics and Technology, Institutskii per. 9, Dolgoprudny, Moscow Region 141700, 3Gamaleya Institute of Epidemiology and Microbiology Russian Academy of Medical Sciences, Gamaleya Street, 18, Moscow 123098, 4Institute of Agricultural Biotechnology, Russian Academy of Agricultural Sciences, Timiryazevskay Street 42, Moscow 127550, Russia, 5Parascript LLC, Winchester Circle 6899, Ste. 200, Boulder, CO 80301, USA and 6A.N. Belozersky Institute of Physical and Chemical Biology, Moscow State University, Leninskie Gory 1-40, Moscow 119991, Russia","Moscow Institute of Physics and Technology, Dolgoprudnyy, Russia"],"affiliations":[{"raw_affiliation_string":"1Departament of Bioengineering and Bioinformatics, M.V. Lomonosov Moscow State University, Vorbyevy Gory 1-73, Moscow 119992, Russia, 2Moscow Institute of Physics and Technology, Institutskii per. 9, Dolgoprudny, Moscow Region 141700, 3Gamaleya Institute of Epidemiology and Microbiology Russian Academy of Medical Sciences, Gamaleya Street, 18, Moscow 123098, 4Institute of Agricultural Biotechnology, Russian Academy of Agricultural Sciences, Timiryazevskay Street 42, Moscow 127550, Russia, 5Parascript LLC, Winchester Circle 6899, Ste. 200, Boulder, CO 80301, USA and 6A.N. Belozersky Institute of Physical and Chemical Biology, Moscow State University, Leninskie Gory 1-40, Moscow 119991, Russia","institution_ids":["https://openalex.org/I19880235","https://openalex.org/I153845743"]},{"raw_affiliation_string":"Moscow Institute of Physics and Technology, Dolgoprudnyy, Russia","institution_ids":["https://openalex.org/I153845743"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5056443509"],"corresponding_institution_ids":["https://openalex.org/I19880235"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.3438,"has_fulltext":true,"cited_by_count":26,"citation_normalized_percentile":{"value":0.801541,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"38","issue":"suppl_1","first_page":"D726","last_page":"D730"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7852701544761658},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.6329331398010254},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.6193159222602844},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5038909316062927},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.48643946647644043},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.47250092029571533},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.46253183484077454},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4477533996105194},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.4180357754230499},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.4177469313144684},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.4049987196922302},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.30938345193862915},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.09909749031066895},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.0854753851890564}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7852701544761658},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.6329331398010254},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.6193159222602844},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5038909316062927},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.48643946647644043},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.47250092029571533},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.46253183484077454},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4477533996105194},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.4180357754230499},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.4177469313144684},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.4049987196922302},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.30938345193862915},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.09909749031066895},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.0854753851890564}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007438","descriptor_name":"Introns","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007438","descriptor_name":"Introns","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007438","descriptor_name":"Introns","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009693","descriptor_name":"Nucleic Acid Hybridization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009693","descriptor_name":"Nucleic Acid Hybridization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009693","descriptor_name":"Nucleic Acid Hybridization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkp969","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp969","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D726/11218313/gkp969.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:19906711","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19906711","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:nar:38/suppl_1/D726","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/38/suppl_1/D726","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:2808952","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2808952","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkp969","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp969","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D726/11218313/gkp969.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320290","display_name":"University of Oxford","ror":"https://ror.org/052gg0110"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2120061581.pdf","grobid_xml":"https://content.openalex.org/works/W2120061581.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W1484872771","https://openalex.org/W1805019014","https://openalex.org/W1981194976","https://openalex.org/W1993334375","https://openalex.org/W2004200760","https://openalex.org/W2011920499","https://openalex.org/W2070491426","https://openalex.org/W2084281896","https://openalex.org/W2096525273","https://openalex.org/W2099135975","https://openalex.org/W2100639130","https://openalex.org/W2108543860","https://openalex.org/W2118968431","https://openalex.org/W2122732537","https://openalex.org/W2123067735","https://openalex.org/W2127144561","https://openalex.org/W2131657764","https://openalex.org/W2135827569","https://openalex.org/W2136145671","https://openalex.org/W2138660579","https://openalex.org/W2148911704","https://openalex.org/W2155804510","https://openalex.org/W2170989872","https://openalex.org/W4212865600","https://openalex.org/W4250297812","https://openalex.org/W6677857377"],"related_works":["https://openalex.org/W2161069068","https://openalex.org/W3109437984","https://openalex.org/W2076485048","https://openalex.org/W2152320398","https://openalex.org/W4238306487","https://openalex.org/W2396992196","https://openalex.org/W3034139913","https://openalex.org/W1759033142","https://openalex.org/W2042690128","https://openalex.org/W1506981339"],"abstract_inverted_index":{"Standard":[0],"Affymetrix":[1,99],"technology":[2],"evaluates":[3],"gene":[4,45],"expression":[5,100],"by":[6,27,193],"measuring":[7],"the":[8,17,23,39,52,55,65,89,92,103,109,112,116,127,134,138,142,147,150,154,178,188],"intensity":[9,37],"of":[10,16,38,54,60,64,91,94,141,168],"mRNA":[11,128],"hybridization":[12,53],"with":[13,44],"a":[14,28,58,81],"panel":[15],"25-mer":[18],"oligonucleotide":[19],"probes,":[20],"and":[21,75,129,158],"summarizing":[22],"probe":[24,40,56,66,95,122,135,155],"signal":[25,36],"intensities":[26],"robust":[29],"average":[30],"method.":[31],"However,":[32],"in":[33,115],"many":[34],"cases,":[35],"does":[41],"not":[42],"correlate":[43],"expression.":[46],"This":[47],"could":[48],"be":[49],"due":[50],"to":[51,57,67,102,177,185],"transcript":[59],"another":[61],"gene,":[62],"mapping":[63],"an":[68],"intron,":[69],"alternative":[70],"splicing,":[71],"single":[72],"nucleotide":[73],"polymorphisms":[74],"other":[76],"reasons.":[77],"We":[78,106],"have":[79,107],"developed":[80],"database,":[82],"PLANdbAffy":[83],"(available":[84],"at":[85],"http://affymetrix2.bioinf.fbb.msu.ru),":[86],"that":[87,132,152,160,182,190],"contains":[88],"results":[90],"alignment":[93,123,156],"sequences":[96,131,151],"from":[97],"five":[98],"microarrays":[101],"human":[104],"genome.":[105],"determined":[108,126],"probes":[110],"matching":[111],"transcript-coding":[113],"regions":[114],"correct":[117],"orientation.":[118],"For":[119],"each":[120],"such":[121],"region,":[124],"we":[125,145],"EST":[130],"contain":[133],"sequence.":[136],"In":[137],"textual":[139],"part":[140,167],"database":[143,170],"interface":[144,171],"summarize":[146],"data":[148,189],"on":[149],"cover":[153],"region":[157],"SNPs":[159],"are":[161,191],"located":[162],"inside":[163],"it.":[164],"The":[165],"graphical":[166],"our":[169],"is":[172],"implemented":[173],"as":[174],"custom":[175],"tracks":[176],"UCSC":[179,194],"genome":[180],"browser":[181],"allows":[183],"one":[184],"utilize":[186],"all":[187],"offered":[192],"browser.":[195]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":6}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}