{"id":"https://openalex.org/W2117847326","doi":"https://doi.org/10.1093/nar/gkp958","title":"The Protein Naming Utility: a rules database for protein nomenclature","display_name":"The Protein Naming Utility: a rules database for protein nomenclature","publication_year":2009,"publication_date":"2009-12-08","ids":{"openalex":"https://openalex.org/W2117847326","doi":"https://doi.org/10.1093/nar/gkp958","mag":"2117847326","pmid":"https://pubmed.ncbi.nlm.nih.gov/20007151"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkp958","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp958","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D336/16772598/gkp958.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D336/16772598/gkp958.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059160677","display_name":"Johannes B. Goll","orcid":"https://orcid.org/0000-0002-9968-4080"},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Johannes Goll","raw_affiliation_strings":["The J Craig Venter Institute, Rockville, MD 20850, USA. jgoll@jcvi.org","The J, Craig Venter Institute, Rockville, MD 20850, USA"],"affiliations":[{"raw_affiliation_string":"The J Craig Venter Institute, Rockville, MD 20850, USA. jgoll@jcvi.org","institution_ids":["https://openalex.org/I1301553790"]},{"raw_affiliation_string":"The J, Craig Venter Institute, Rockville, MD 20850, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036225070","display_name":"Robert A. Montgomery","orcid":"https://orcid.org/0000-0001-9914-6082"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Robert Montgomery","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083686393","display_name":"Lauren Brinkac","orcid":"https://orcid.org/0000-0002-7549-7280"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lauren M. Brinkac","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077249762","display_name":"Seth Schobel","orcid":"https://orcid.org/0000-0002-8967-257X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Seth Schobel","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071328878","display_name":"Derek M. Harkins","orcid":"https://orcid.org/0000-0002-4704-0275"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Derek M. Harkins","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069841715","display_name":"Yinong Sebastian","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yinong Sebastian","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082221659","display_name":"Susmita Shrivastava","orcid":"https://orcid.org/0000-0001-8252-2926"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Susmita Shrivastava","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110256355","display_name":"Scott Durkin","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Scott Durkin","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5111603387","display_name":"Granger Sutton","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Granger Sutton","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5059160677"],"corresponding_institution_ids":["https://openalex.org/I1301553790"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.4044,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.64112581,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"38","issue":"suppl_1","first_page":"D336","last_page":"D339"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9886999726295471,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.7450253367424011},{"id":"https://openalex.org/keywords/nomenclature","display_name":"Nomenclature","score":0.6960940957069397},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6269926428794861},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5740517973899841},{"id":"https://openalex.org/keywords/table","display_name":"Table (database)","score":0.5334031581878662},{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.5275219082832336},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5250123143196106},{"id":"https://openalex.org/keywords/gene-nomenclature","display_name":"Gene nomenclature","score":0.43923380970954895},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4370664060115814},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4322349429130554},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3209659457206726},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.23375913500785828},{"id":"https://openalex.org/keywords/taxonomy","display_name":"Taxonomy (biology)","score":0.1816462278366089},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14153891801834106}],"concepts":[{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.7450253367424011},{"id":"https://openalex.org/C514705636","wikidata":"https://www.wikidata.org/wiki/Q863247","display_name":"Nomenclature","level":3,"score":0.6960940957069397},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6269926428794861},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5740517973899841},{"id":"https://openalex.org/C45235069","wikidata":"https://www.wikidata.org/wiki/Q278425","display_name":"Table (database)","level":2,"score":0.5334031581878662},{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.5275219082832336},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5250123143196106},{"id":"https://openalex.org/C62177273","wikidata":"https://www.wikidata.org/wiki/Q5531556","display_name":"Gene nomenclature","level":4,"score":0.43923380970954895},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4370664060115814},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4322349429130554},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3209659457206726},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.23375913500785828},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.1816462278366089},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14153891801834106},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/gkp958","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp958","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D336/16772598/gkp958.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:20007151","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20007151","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.490.8416","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.490.8416","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.jcvi.org/pn-utility/web/files/pnu-publication-2.0.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.603.7166","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.603.7166","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2009/12/08/nar.gkp958.full.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.606.9770","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.606.9770","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2009/12/08/nar.gkp958.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:open-archive.highwire.org:nar:38/suppl_1/D336","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/38/suppl_1/D336","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:2808875","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2808875","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkp958","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp958","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D336/16772598/gkp958.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.47999998927116394,"id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2117847326.pdf","grobid_xml":"https://content.openalex.org/works/W2117847326.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W2097057598","https://openalex.org/W2107747058","https://openalex.org/W2110679449","https://openalex.org/W2124767974","https://openalex.org/W2136514583","https://openalex.org/W2144896636","https://openalex.org/W2155225302","https://openalex.org/W2161062388","https://openalex.org/W2165371346","https://openalex.org/W4211000692","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2102027645","https://openalex.org/W2107785922","https://openalex.org/W4376630906","https://openalex.org/W4291008795","https://openalex.org/W2035528219","https://openalex.org/W4225832891","https://openalex.org/W2415545865","https://openalex.org/W2506632566","https://openalex.org/W2402478170","https://openalex.org/W4289254701"],"abstract_inverted_index":{"Generation":[0],"of":[1,30,99,108],"syntactically":[2,78],"correct":[3,77,160],"and":[4,44,70,76,96,150],"unambiguous":[5],"names":[6,51,140],"for":[7,15,68,124],"proteins":[8],"is":[9,64],"a":[10,65,142],"challenging,":[11],"yet":[12],"vital":[13],"task":[14],"functional":[16],"annotation":[17],"processes.":[18],"Proteins":[19],"are":[20],"often":[21,120],"named":[22],"based":[23],"on":[24],"homology":[25],"to":[26,39,74,83,94,159,165,167],"known":[27],"proteins,":[28,126],"many":[29],"which":[31],"have":[32,54,177],"problematic":[33],"names.":[34,152,190],"To":[35],"address":[36],"the":[37,56,105,112,127,170],"need":[38],"generate":[40,95],"high-quality":[41],"protein":[42,50,80,139],"names,":[43,81],"capture":[45],"our":[46],"significant":[47],"experience":[48],"correcting":[49],"manually,":[52],"we":[53],"developed":[55],"Protein":[57],"Naming":[58],"Utility":[59],"(PNU,":[60],"http://www.jcvi.org/pn-utility).":[61],"The":[62,90,153],"PNU":[63,91,128,144,154],"web-based":[66],"database":[67,171],"storing":[69],"applying":[71],"naming":[72,100,125],"rules":[73,109,131,175],"identify":[75],"incorrect":[79],"or":[82],"replace":[84],"synonyms":[85],"with":[86],"their":[87,138],"preferred":[88],"name.":[89],"allows":[92],"users":[93],"manage":[97],"collections":[98],"rules,":[101],"optionally":[102],"building":[103],"upon":[104],"growing":[106],"body":[107],"generated":[110],"at":[111],"J.":[113],"Craig":[114],"Venter":[115],"Institute":[116],"(JCVI).":[117],"Since":[118],"communities":[119],"enforce":[121],"disparate":[122],"conventions":[123],"supports":[129],"grouping":[130],"into":[132],"user-managed":[133],"collections.":[134],"Users":[135],"can":[136,155],"check":[137],"against":[141],"selected":[143],"rule":[145],"collection,":[146],"generating":[147],"both":[148],"statistics":[149],"corrected":[151],"also":[156],"be":[157],"used":[158],"GenBank":[161],"table":[162],"files":[163],"prior":[164],"submission":[166],"GenBank.":[168],"Currently,":[169],"features":[172],"3080":[173],"manual":[174],"that":[176],"been":[178],"entered":[179],"by":[180],"JCVI":[181],"Bioinformatics":[182],"Analysts":[183],"as":[184,186],"well":[185],"7458":[187],"automatically":[188],"imported":[189]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
