{"id":"https://openalex.org/W2139932193","doi":"https://doi.org/10.1093/nar/gkp934","title":"T3DB: a comprehensively annotated database of common toxins and their targets","display_name":"T3DB: a comprehensively annotated database of common toxins and their targets","publication_year":2009,"publication_date":"2009-11-06","ids":{"openalex":"https://openalex.org/W2139932193","doi":"https://doi.org/10.1093/nar/gkp934","mag":"2139932193","pmid":"https://pubmed.ncbi.nlm.nih.gov/19897546"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkp934","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp934","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D781/11218144/gkp934.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D781/11218144/gkp934.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112099576","display_name":"Emilia L. Lim","orcid":"https://orcid.org/0009-0009-2954-1795"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Emilia Lim","raw_affiliation_strings":["Department of Computing Science, University of Alberta, Edmonton, AB, Canada","Dept. of Computing Science, University of Alberta, Edmonton AB, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computing Science, University of Alberta, Edmonton, AB, Canada","institution_ids":["https://openalex.org/I154425047"]},{"raw_affiliation_string":"Dept. of Computing Science, University of Alberta, Edmonton AB, Canada","institution_ids":["https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041465714","display_name":"Allison Pon","orcid":null},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]},{"id":"https://openalex.org/I40752897","display_name":"National Institute for Nanotechnology","ror":"https://ror.org/05c0g2426","country_code":"CA","type":"facility","lineage":["https://openalex.org/I40752897","https://openalex.org/I4210159778"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Allison Pon","raw_affiliation_strings":["Department of Computing Science, 2 Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E8 and 3 National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9","1Department of Computing Science, 2Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E8 and 3National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computing Science, 2 Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E8 and 3 National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9","institution_ids":["https://openalex.org/I40752897"]},{"raw_affiliation_string":"1Department of Computing Science, 2Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E8 and 3National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9","institution_ids":["https://openalex.org/I40752897","https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065759390","display_name":"Yannick Djoumbou-Feunang","orcid":"https://orcid.org/0000-0001-7850-184X"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]},{"id":"https://openalex.org/I40752897","display_name":"National Institute for Nanotechnology","ror":"https://ror.org/05c0g2426","country_code":"CA","type":"facility","lineage":["https://openalex.org/I40752897","https://openalex.org/I4210159778"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Yannick Djoumbou","raw_affiliation_strings":["Department of Computing Science, 2 Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E8 and 3 National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9","1Department of Computing Science, 2Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E8 and 3National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computing Science, 2 Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E8 and 3 National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9","institution_ids":["https://openalex.org/I40752897"]},{"raw_affiliation_string":"1Department of Computing Science, 2Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E8 and 3National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9","institution_ids":["https://openalex.org/I40752897","https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109701520","display_name":"Craig Knox","orcid":null},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]},{"id":"https://openalex.org/I40752897","display_name":"National Institute for Nanotechnology","ror":"https://ror.org/05c0g2426","country_code":"CA","type":"facility","lineage":["https://openalex.org/I40752897","https://openalex.org/I4210159778"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Craig Knox","raw_affiliation_strings":["Department of Computing Science, 2 Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E8 and 3 National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9","1Department of Computing Science, 2Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E8 and 3National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computing Science, 2 Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E8 and 3 National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9","institution_ids":["https://openalex.org/I40752897"]},{"raw_affiliation_string":"1Department of Computing Science, 2Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E8 and 3National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9","institution_ids":["https://openalex.org/I40752897","https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083944845","display_name":"Savita Shrivastava","orcid":null},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]},{"id":"https://openalex.org/I40752897","display_name":"National Institute for Nanotechnology","ror":"https://ror.org/05c0g2426","country_code":"CA","type":"facility","lineage":["https://openalex.org/I40752897","https://openalex.org/I4210159778"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Savita Shrivastava","raw_affiliation_strings":["Department of Computing Science, 2 Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E8 and 3 National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9","1Department of Computing Science, 2Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E8 and 3National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computing Science, 2 Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E8 and 3 National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9","institution_ids":["https://openalex.org/I40752897"]},{"raw_affiliation_string":"1Department of Computing Science, 2Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E8 and 3National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9","institution_ids":["https://openalex.org/I40752897","https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113668291","display_name":"An Chi Guo","orcid":"https://orcid.org/0009-0003-7256-1317"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]},{"id":"https://openalex.org/I40752897","display_name":"National Institute for Nanotechnology","ror":"https://ror.org/05c0g2426","country_code":"CA","type":"facility","lineage":["https://openalex.org/I40752897","https://openalex.org/I4210159778"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"An Chi Guo","raw_affiliation_strings":["Department of Computing Science, 2 Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E8 and 3 National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9","1Department of Computing Science, 2Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E8 and 3National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computing Science, 2 Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E8 and 3 National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9","institution_ids":["https://openalex.org/I40752897"]},{"raw_affiliation_string":"1Department of Computing Science, 2Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E8 and 3National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9","institution_ids":["https://openalex.org/I40752897","https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003117330","display_name":"Vanessa Neveu","orcid":"https://orcid.org/0000-0002-8501-7789"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]},{"id":"https://openalex.org/I40752897","display_name":"National Institute for Nanotechnology","ror":"https://ror.org/05c0g2426","country_code":"CA","type":"facility","lineage":["https://openalex.org/I40752897","https://openalex.org/I4210159778"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Vanessa Neveu","raw_affiliation_strings":["Department of Computing Science, 2 Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E8 and 3 National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9","1Department of Computing Science, 2Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E8 and 3National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computing Science, 2 Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E8 and 3 National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9","institution_ids":["https://openalex.org/I40752897"]},{"raw_affiliation_string":"1Department of Computing Science, 2Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E8 and 3National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9","institution_ids":["https://openalex.org/I40752897","https://openalex.org/I154425047"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003573061","display_name":"David S. Wishart","orcid":"https://orcid.org/0000-0002-3207-2434"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]},{"id":"https://openalex.org/I40752897","display_name":"National Institute for Nanotechnology","ror":"https://ror.org/05c0g2426","country_code":"CA","type":"facility","lineage":["https://openalex.org/I40752897","https://openalex.org/I4210159778"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"David S. Wishart","raw_affiliation_strings":["Department of Computing Science, 2 Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E8 and 3 National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9","1Department of Computing Science, 2Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E8 and 3National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computing Science, 2 Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E8 and 3 National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9","institution_ids":["https://openalex.org/I40752897"]},{"raw_affiliation_string":"1Department of Computing Science, 2Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E8 and 3National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9","institution_ids":["https://openalex.org/I40752897","https://openalex.org/I154425047"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5003573061"],"corresponding_institution_ids":["https://openalex.org/I154425047","https://openalex.org/I40752897"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.6018,"has_fulltext":true,"cited_by_count":168,"citation_normalized_percentile":{"value":0.89935357,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"38","issue":"suppl_1","first_page":"D781","last_page":"D786"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9746000170707703,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9746000170707703,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11641","display_name":"Insect and Pesticide Research","score":0.9433000087738037,"subfield":{"id":"https://openalex.org/subfields/1109","display_name":"Insect Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11515","display_name":"Bacillus and Francisella bacterial research","score":0.9147999882698059,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9238084554672241},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5354734659194946},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3295503854751587},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.06878665089607239}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9238084554672241},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5354734659194946},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3295503854751587},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.06878665089607239}],"mesh":[{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010600","descriptor_name":"Pharmacology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010600","descriptor_name":"Pharmacology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010600","descriptor_name":"Pharmacology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014118","descriptor_name":"Toxins, Biological","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014118","descriptor_name":"Toxins, Biological","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014118","descriptor_name":"Toxins, Biological","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkp934","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp934","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D781/11218144/gkp934.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:19897546","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19897546","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:nar:38/suppl_1/D781","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/38/suppl_1/D781","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:2808899","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2808899","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkp934","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp934","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D781/11218144/gkp934.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310787","display_name":"Genome Canada","ror":"https://ror.org/029s29983"},{"id":"https://openalex.org/F4320315044","display_name":"Ministry of Advanced Education, Government of Alberta","ror":"https://ror.org/05gyngk54"},{"id":"https://openalex.org/F4320326646","display_name":"Genome Alberta","ror":null},{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2139932193.pdf","grobid_xml":"https://content.openalex.org/works/W2139932193.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1975147762","https://openalex.org/W1996561782","https://openalex.org/W2009313526","https://openalex.org/W2031950862","https://openalex.org/W2033031463","https://openalex.org/W2053385401","https://openalex.org/W2083139976","https://openalex.org/W2090008197","https://openalex.org/W2092221933","https://openalex.org/W2126138337","https://openalex.org/W2127553917","https://openalex.org/W2131347449","https://openalex.org/W2136640051","https://openalex.org/W2158714788","https://openalex.org/W2160629127","https://openalex.org/W6683543950"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W1971568933","https://openalex.org/W2013243191","https://openalex.org/W2117258802"],"abstract_inverted_index":{"In":[0],"an":[1],"effort":[2],"to":[3,172],"capture":[4],"meaningful":[5],"biological,":[6],"chemical":[7,84,165],"and":[8,24,44,60,65,86,91,97,100,108,116,129,150,154,160,167,181,196],"mechanistic":[9,106],"information":[10,38,82,107,111,151],"about":[11,39],"clinically":[12],"relevant,":[13],"commonly":[14],"encountered":[15],"or":[16,41],"important":[17],"toxins,":[18,62],"we":[19],"have":[20],"developed":[21],"the":[22,136,176,186],"Toxin":[23],"Toxin-Target":[25],"Database":[26,179],"(T3DB).":[27],"The":[28,52,199],"T3DB":[29,72,137,156,187,200],"is":[30,138,157,201],"a":[31,48],"unique":[32],"bioinformatics":[33],"resource":[34],"that":[35],"compiles":[36],"comprehensive":[37],"common":[40],"ubiquitous":[42],"toxins":[43,153],"their":[45],"toxin-targets":[46,64],"into":[47],"single":[49],"electronic":[50,124],"repository.":[51],"database":[53],"currently":[54],"contains":[55,75],"over":[56,76,142],"2900":[57],"small":[58],"molecule":[59],"peptide":[61],"1300":[63],"more":[66],"than":[67],"33,000":[68],"toxin-target":[69],"associations.":[70],"Each":[71],"record":[73],"(ToxCard)":[74],"80":[77],"data":[78],"fields":[79],"providing":[80,140],"detailed":[81,145],"on":[83,139,152],"properties":[85],"descriptors,":[87],"toxicity":[88,194],"values,":[89],"protein":[90],"gene":[92],"sequences":[93],"(for":[94],"both":[95],"targets":[96],"toxins),":[98],"molecular":[99],"cellular":[101],"interaction":[102],"data,":[103,105],"toxicological":[104],"references.":[109],"This":[110],"has":[112],"been":[113],"manually":[114,117],"extracted":[115],"verified":[118],"from":[119],"numerous":[120],"sources,":[121],"including":[122],"other":[123],"databases,":[125],"government":[126],"documents,":[127],"textbooks":[128],"scientific":[130],"journals.":[131],"A":[132],"key":[133],"focus":[134],"of":[135,148,185],"'depth'":[141],"'breadth'":[143],"with":[144],"descriptions,":[146],"mechanisms":[147],"action,":[149],"toxin-targets.":[155],"fully":[158],"searchable":[159],"supports":[161],"extensive":[162],"text,":[163],"sequence,":[164],"structure":[166],"relational":[168],"query":[169],"searches,":[170],"similar":[171],"those":[173],"found":[174],"in":[175],"Human":[177],"Metabolome":[178],"(HMDB)":[180],"DrugBank.":[182],"Potential":[183],"applications":[184],"include":[188],"clinical":[189],"metabolomics,":[190],"toxin":[191],"target":[192],"prediction,":[193],"prediction":[195],"toxicology":[197],"education.":[198],"available":[202],"online":[203],"at":[204],"http://www.t3db.org.":[205]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":21},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":17},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":13},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":10},{"year":2017,"cited_by_count":10},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":9},{"year":2014,"cited_by_count":11},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":11}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
