{"id":"https://openalex.org/W1984345785","doi":"https://doi.org/10.1093/nar/gkp912","title":"The comprehensive microbial resource","display_name":"The comprehensive microbial resource","publication_year":2009,"publication_date":"2009-11-05","ids":{"openalex":"https://openalex.org/W1984345785","doi":"https://doi.org/10.1093/nar/gkp912","mag":"1984345785","pmid":"https://pubmed.ncbi.nlm.nih.gov/19892825"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkp912","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp912","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D340/11217967/gkp912.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D340/11217967/gkp912.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014498991","display_name":"Tanja M. Davidsen","orcid":"https://orcid.org/0009-0006-5102-3116"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tanja Davidsen","raw_affiliation_strings":["J Craig Venter Institute, Rockville, MD 20850, USA. tanjad@jcvi.org","1J. Craig Venter Institute, Rockville, MD 20850 and 2Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"J Craig Venter Institute, Rockville, MD 20850, USA. tanjad@jcvi.org","institution_ids":["https://openalex.org/I1301553790"]},{"raw_affiliation_string":"1J. Craig Venter Institute, Rockville, MD 20850 and 2Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA","institution_ids":["https://openalex.org/I126744593","https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088696166","display_name":"Erin Beck","orcid":"https://orcid.org/0000-0001-7839-7958"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Erin Beck","raw_affiliation_strings":["J. Craig Venter Institute, Rockville, MD 20850 and","1J. Craig Venter Institute, Rockville, MD 20850 and 2Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"J. Craig Venter Institute, Rockville, MD 20850 and","institution_ids":["https://openalex.org/I1301553790"]},{"raw_affiliation_string":"1J. Craig Venter Institute, Rockville, MD 20850 and 2Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA","institution_ids":["https://openalex.org/I126744593","https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046188403","display_name":"Anuradha Ganapathy","orcid":null},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anuradha Ganapathy","raw_affiliation_strings":["Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA","1J. Craig Venter Institute, Rockville, MD 20850 and 2Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA","institution_ids":["https://openalex.org/I126744593"]},{"raw_affiliation_string":"1J. Craig Venter Institute, Rockville, MD 20850 and 2Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA","institution_ids":["https://openalex.org/I126744593","https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036225070","display_name":"Robert A. Montgomery","orcid":"https://orcid.org/0000-0001-9914-6082"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert Montgomery","raw_affiliation_strings":["J. Craig Venter Institute, Rockville, MD 20850 and","1J. Craig Venter Institute, Rockville, MD 20850 and 2Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"J. Craig Venter Institute, Rockville, MD 20850 and","institution_ids":["https://openalex.org/I1301553790"]},{"raw_affiliation_string":"1J. Craig Venter Institute, Rockville, MD 20850 and 2Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA","institution_ids":["https://openalex.org/I126744593","https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108365468","display_name":"Nikhat Zafar","orcid":null},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nikhat Zafar","raw_affiliation_strings":["J. Craig Venter Institute, Rockville, MD 20850 and","1J. Craig Venter Institute, Rockville, MD 20850 and 2Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"J. Craig Venter Institute, Rockville, MD 20850 and","institution_ids":["https://openalex.org/I1301553790"]},{"raw_affiliation_string":"1J. Craig Venter Institute, Rockville, MD 20850 and 2Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA","institution_ids":["https://openalex.org/I126744593","https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089724806","display_name":"Qi Yang","orcid":"https://orcid.org/0000-0003-1899-0586"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qi Yang","raw_affiliation_strings":["J. Craig Venter Institute, Rockville, MD 20850 and","1J. Craig Venter Institute, Rockville, MD 20850 and 2Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"J. Craig Venter Institute, Rockville, MD 20850 and","institution_ids":["https://openalex.org/I1301553790"]},{"raw_affiliation_string":"1J. Craig Venter Institute, Rockville, MD 20850 and 2Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA","institution_ids":["https://openalex.org/I126744593","https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008892080","display_name":"Ramana Madupu","orcid":null},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ramana Madupu","raw_affiliation_strings":["J. Craig Venter Institute, Rockville, MD 20850 and","1J. Craig Venter Institute, Rockville, MD 20850 and 2Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"J. Craig Venter Institute, Rockville, MD 20850 and","institution_ids":["https://openalex.org/I1301553790"]},{"raw_affiliation_string":"1J. Craig Venter Institute, Rockville, MD 20850 and 2Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA","institution_ids":["https://openalex.org/I126744593","https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037020392","display_name":"Phil Goetz","orcid":null},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Phil Goetz","raw_affiliation_strings":["J. Craig Venter Institute, Rockville, MD 20850 and","1J. Craig Venter Institute, Rockville, MD 20850 and 2Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"J. Craig Venter Institute, Rockville, MD 20850 and","institution_ids":["https://openalex.org/I1301553790"]},{"raw_affiliation_string":"1J. Craig Venter Institute, Rockville, MD 20850 and 2Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA","institution_ids":["https://openalex.org/I126744593","https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091728982","display_name":"Kevin Galinsky","orcid":"https://orcid.org/0000-0003-0311-4938"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kevin Galinsky","raw_affiliation_strings":["J. Craig Venter Institute, Rockville, MD 20850 and","1J. Craig Venter Institute, Rockville, MD 20850 and 2Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"J. Craig Venter Institute, Rockville, MD 20850 and","institution_ids":["https://openalex.org/I1301553790"]},{"raw_affiliation_string":"1J. Craig Venter Institute, Rockville, MD 20850 and 2Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA","institution_ids":["https://openalex.org/I126744593","https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067205063","display_name":"Owen White","orcid":"https://orcid.org/0000-0001-7406-7361"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Owen White","raw_affiliation_strings":["Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA","1J. Craig Venter Institute, Rockville, MD 20850 and 2Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA","institution_ids":["https://openalex.org/I126744593"]},{"raw_affiliation_string":"1J. Craig Venter Institute, Rockville, MD 20850 and 2Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA","institution_ids":["https://openalex.org/I126744593","https://openalex.org/I1301553790"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111603387","display_name":"Granger Sutton","orcid":null},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Granger Sutton","raw_affiliation_strings":["J. Craig Venter Institute, Rockville, MD 20850 and","1J. Craig Venter Institute, Rockville, MD 20850 and 2Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"J. Craig Venter Institute, Rockville, MD 20850 and","institution_ids":["https://openalex.org/I1301553790"]},{"raw_affiliation_string":"1J. Craig Venter Institute, Rockville, MD 20850 and 2Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA","institution_ids":["https://openalex.org/I126744593","https://openalex.org/I1301553790"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":19.8549,"has_fulltext":true,"cited_by_count":486,"citation_normalized_percentile":{"value":0.99658675,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"38","issue":"suppl_1","first_page":"D340","last_page":"D345"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9807999730110168,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9805999994277954,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.8828645944595337},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7875440120697021},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6774677634239197},{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.6492650508880615},{"id":"https://openalex.org/keywords/genome-project","display_name":"Genome project","score":0.6319956183433533},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.6118325591087341},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5498197674751282},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.5133013129234314},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.43596014380455017},{"id":"https://openalex.org/keywords/gene-prediction","display_name":"Gene prediction","score":0.42538678646087646},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.34292924404144287},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3273656368255615}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.8828645944595337},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7875440120697021},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6774677634239197},{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.6492650508880615},{"id":"https://openalex.org/C89566754","wikidata":"https://www.wikidata.org/wiki/Q2273828","display_name":"Genome project","level":4,"score":0.6319956183433533},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.6118325591087341},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5498197674751282},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.5133013129234314},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.43596014380455017},{"id":"https://openalex.org/C105565629","wikidata":"https://www.wikidata.org/wiki/Q1248292","display_name":"Gene prediction","level":4,"score":0.42538678646087646},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.34292924404144287},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3273656368255615}],"mesh":[{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkp912","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp912","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D340/11217967/gkp912.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:19892825","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19892825","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:nar:38/suppl_1/D340","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/38/suppl_1/D340","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:2808947","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2808947","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkp912","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp912","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D340/11217967/gkp912.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1451214027","display_name":"The Development of a Prokaryotic Annotation Engine","funder_award_id":"0110270","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2813042271","display_name":"CONTINUATION OF COMPREHENSIVE MICROBIAL RESOURCE","funder_award_id":"FG02-01ER63203","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7186324567","display_name":null,"funder_award_id":"DE-FG02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8684078510","display_name":null,"funder_award_id":"DE-FG02","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1984345785.pdf","grobid_xml":"https://content.openalex.org/works/W1984345785.grobid-xml"},"referenced_works_count":60,"referenced_works":["https://openalex.org/W1518344608","https://openalex.org/W1539845468","https://openalex.org/W1608218663","https://openalex.org/W1887198461","https://openalex.org/W1921645034","https://openalex.org/W1970519736","https://openalex.org/W1971158963","https://openalex.org/W1978688271","https://openalex.org/W1982481323","https://openalex.org/W1988035696","https://openalex.org/W1993648285","https://openalex.org/W2013256742","https://openalex.org/W2017608260","https://openalex.org/W2022726657","https://openalex.org/W2045624202","https://openalex.org/W2049237156","https://openalex.org/W2055043387","https://openalex.org/W2055552740","https://openalex.org/W2076696121","https://openalex.org/W2095685450","https://openalex.org/W2098345337","https://openalex.org/W2098772291","https://openalex.org/W2099619283","https://openalex.org/W2103017472","https://openalex.org/W2106658384","https://openalex.org/W2109867978","https://openalex.org/W2111373249","https://openalex.org/W2113989263","https://openalex.org/W2114083522","https://openalex.org/W2114598194","https://openalex.org/W2114624178","https://openalex.org/W2119195082","https://openalex.org/W2119464316","https://openalex.org/W2123060905","https://openalex.org/W2123179625","https://openalex.org/W2123501554","https://openalex.org/W2133253129","https://openalex.org/W2133790733","https://openalex.org/W2134558296","https://openalex.org/W2139695444","https://openalex.org/W2141885858","https://openalex.org/W2145735028","https://openalex.org/W2149429041","https://openalex.org/W2151831732","https://openalex.org/W2152331922","https://openalex.org/W2153018010","https://openalex.org/W2155102754","https://openalex.org/W2155331065","https://openalex.org/W2155606054","https://openalex.org/W2156655611","https://openalex.org/W2157392953","https://openalex.org/W2158381555","https://openalex.org/W2161062388","https://openalex.org/W2167802073","https://openalex.org/W2169028134","https://openalex.org/W4210323379","https://openalex.org/W4231158042","https://openalex.org/W4240231372","https://openalex.org/W4250052351","https://openalex.org/W6677611723"],"related_works":["https://openalex.org/W3034139913","https://openalex.org/W2980998232","https://openalex.org/W4388524370","https://openalex.org/W2101269698","https://openalex.org/W2294108133","https://openalex.org/W2078942911","https://openalex.org/W2059565715","https://openalex.org/W2117510233","https://openalex.org/W2781157830","https://openalex.org/W1814949048"],"abstract_inverted_index":{"The":[0,76,156,178],"Comprehensive":[1],"Microbial":[2],"Resource":[3],"or":[4,94],"CMR":[5,42,77,162,170,182,186],"(http://cmr.jcvi.org)":[6],"provides":[7],"a":[8],"web-based":[9],"central":[10],"resource":[11],"for":[12,23,60,191],"the":[13,19,36,41,87,97,103,109,145,161,169,181,185],"display,":[14],"search":[15],"and":[16,21,25,29,48,89,112,126,138,142,148,158,166,168,184],"analysis":[17,133],"of":[18,63,96],"sequence":[20,88],"annotation":[22,38,50,90,111],"complete":[24],"publicly":[26],"available":[27,44,100,190],"bacterial":[28],"archaeal":[30],"genomes.":[31,101],"In":[32],"addition":[33],"to":[34,54,71,85,151],"displaying":[35],"original":[37],"from":[39],"GenBank,":[40],"makes":[43],"secondary":[45],"automated":[46],"structural":[47],"functional":[49],"across":[51,92,144],"all":[52,152],"genomes":[53,135],"provide":[55],"consistent":[56],"data":[57,91,157],"types":[58],"necessary":[59],"effective":[61],"mining":[62],"genomic":[64,164],"data.":[65,129],"Precomputed":[66],"homology":[67,137],"searches":[68,143],"are":[69,154,188],"stored":[70],"allow":[72],"meaningful":[73],"genome":[74,120,127,139],"comparisons.":[75],"supplies":[78],"users":[79,106],"with":[80,136,193],"over":[81,174],"50":[82],"different":[83],"tools":[84,131,159],"utilize":[86],"one":[93],"more":[95],"571":[98],"currently":[99],"At":[102],"gene":[104,110],"level":[105,116],"can":[107],"view":[108],"underlying":[113,180],"evidence.":[114],"Genome":[115],"information":[117],"includes":[118],"whole":[119],"graphical":[121],"displays,":[122],"biochemical":[123],"pathway":[124],"maps":[125],"summary":[128],"Comparative":[130],"display":[132],"between":[134],"alignment":[140],"tools,":[141],"accessions,":[146],"annotation,":[147],"evidence":[149],"assigned":[150],"genes/genomes":[153],"available.":[155],"on":[160],"aid":[163],"research":[165],"analysis,":[167],"is":[171],"included":[172],"in":[173],"200":[175],"scientific":[176],"publications.":[177],"code":[179],"website":[183],"database":[187],"freely":[189],"download":[192],"no":[194],"license":[195],"restrictions.":[196]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":11},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":10},{"year":2015,"cited_by_count":15},{"year":2014,"cited_by_count":30},{"year":2013,"cited_by_count":31},{"year":2012,"cited_by_count":33}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
