{"id":"https://openalex.org/W2152269861","doi":"https://doi.org/10.1093/nar/gkp894","title":"RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes","display_name":"RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes","publication_year":2009,"publication_date":"2009-10-31","ids":{"openalex":"https://openalex.org/W2152269861","doi":"https://doi.org/10.1093/nar/gkp894","mag":"2152269861","pmid":"https://pubmed.ncbi.nlm.nih.gov/19884135"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkp894","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp894","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D111/11217910/gkp894.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D111/11217910/gkp894.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007293969","display_name":"Pavel S. Novichkov","orcid":"https://orcid.org/0000-0002-1102-007X"},"institutions":[{"id":"https://openalex.org/I1313323035","display_name":"Russian Academy of Sciences","ror":"https://ror.org/05qrfxd25","country_code":"RU","type":"funder","lineage":["https://openalex.org/I1313323035"]},{"id":"https://openalex.org/I4210107660","display_name":"Institute for Information Transmission Problems","ror":"https://ror.org/013w2d378","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210097085","https://openalex.org/I4210107660"]},{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]}],"countries":["RU","US"],"is_corresponding":true,"raw_author_name":"Pavel S. Novichkov","raw_affiliation_strings":["Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, State Scientific Center GosNIIGenetika, Moscow 117545, Russia","1Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2State Scientific Center GosNIIGenetika, Moscow 117545, 3Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow 127994, 4Faculty of Bioengineering and Bioinformatics, Moscow State University, Moscow 119992, Russia, 5Department of Bioengineering, University of California, Berkeley, CA 94704-3224, 6Department of Energy Joint Genome Institute, Walnut Creek, CA 94598 and 7Burnham Institute for Medical Research, La Jolla, CA 92037, USA"],"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, State Scientific Center GosNIIGenetika, Moscow 117545, Russia","institution_ids":[]},{"raw_affiliation_string":"1Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2State Scientific Center GosNIIGenetika, Moscow 117545, 3Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow 127994, 4Faculty of Bioengineering and Bioinformatics, Moscow State University, Moscow 119992, Russia, 5Department of Bioengineering, University of California, Berkeley, CA 94704-3224, 6Department of Energy Joint Genome Institute, Walnut Creek, CA 94598 and 7Burnham Institute for Medical Research, La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I4210107660","https://openalex.org/I1313323035","https://openalex.org/I19880235","https://openalex.org/I148283060","https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002919435","display_name":"Olga N. Laikova","orcid":null},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]},{"id":"https://openalex.org/I4210107660","display_name":"Institute for Information Transmission Problems","ror":"https://ror.org/013w2d378","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210097085","https://openalex.org/I4210107660"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I1313323035","display_name":"Russian Academy of Sciences","ror":"https://ror.org/05qrfxd25","country_code":"RU","type":"funder","lineage":["https://openalex.org/I1313323035"]},{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]},{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["RU","US"],"is_corresponding":false,"raw_author_name":"Olga N. Laikova","raw_affiliation_strings":["1Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2State Scientific Center GosNIIGenetika, Moscow 117545, 3Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow 127994, 4Faculty of Bioengineering and Bioinformatics, Moscow State University, Moscow 119992, Russia, 5Department of Bioengineering, University of California, Berkeley, CA 94704-3224, 6Department of Energy Joint Genome Institute, Walnut Creek, CA 94598 and 7Burnham Institute for Medical Research, La Jolla, CA 92037, USA"],"affiliations":[{"raw_affiliation_string":"1Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2State Scientific Center GosNIIGenetika, Moscow 117545, 3Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow 127994, 4Faculty of Bioengineering and Bioinformatics, Moscow State University, Moscow 119992, Russia, 5Department of Bioengineering, University of California, Berkeley, CA 94704-3224, 6Department of Energy Joint Genome Institute, Walnut Creek, CA 94598 and 7Burnham Institute for Medical Research, La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I4210107660","https://openalex.org/I1313323035","https://openalex.org/I19880235","https://openalex.org/I148283060","https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001036471","display_name":"E. S. Novichkova","orcid":null},"institutions":[{"id":"https://openalex.org/I4210107660","display_name":"Institute for Information Transmission Problems","ror":"https://ror.org/013w2d378","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210097085","https://openalex.org/I4210107660"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]},{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I1313323035","display_name":"Russian Academy of Sciences","ror":"https://ror.org/05qrfxd25","country_code":"RU","type":"funder","lineage":["https://openalex.org/I1313323035"]},{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["RU","US"],"is_corresponding":false,"raw_author_name":"Elena S. Novichkova","raw_affiliation_strings":["1Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2State Scientific Center GosNIIGenetika, Moscow 117545, 3Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow 127994, 4Faculty of Bioengineering and Bioinformatics, Moscow State University, Moscow 119992, Russia, 5Department of Bioengineering, University of California, Berkeley, CA 94704-3224, 6Department of Energy Joint Genome Institute, Walnut Creek, CA 94598 and 7Burnham Institute for Medical Research, La Jolla, CA 92037, USA"],"affiliations":[{"raw_affiliation_string":"1Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2State Scientific Center GosNIIGenetika, Moscow 117545, 3Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow 127994, 4Faculty of Bioengineering and Bioinformatics, Moscow State University, Moscow 119992, Russia, 5Department of Bioengineering, University of California, Berkeley, CA 94704-3224, 6Department of Energy Joint Genome Institute, Walnut Creek, CA 94598 and 7Burnham Institute for Medical Research, La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I4210107660","https://openalex.org/I1313323035","https://openalex.org/I19880235","https://openalex.org/I148283060","https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016957787","display_name":"Mikhail S. Gelfand","orcid":"https://orcid.org/0000-0003-4181-0846"},"institutions":[{"id":"https://openalex.org/I1313323035","display_name":"Russian Academy of Sciences","ror":"https://ror.org/05qrfxd25","country_code":"RU","type":"funder","lineage":["https://openalex.org/I1313323035"]},{"id":"https://openalex.org/I4210107660","display_name":"Institute for Information Transmission Problems","ror":"https://ror.org/013w2d378","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210097085","https://openalex.org/I4210107660"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]},{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]}],"countries":["RU","US"],"is_corresponding":false,"raw_author_name":"Mikhail S. Gelfand","raw_affiliation_strings":["1Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2State Scientific Center GosNIIGenetika, Moscow 117545, 3Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow 127994, 4Faculty of Bioengineering and Bioinformatics, Moscow State University, Moscow 119992, Russia, 5Department of Bioengineering, University of California, Berkeley, CA 94704-3224, 6Department of Energy Joint Genome Institute, Walnut Creek, CA 94598 and 7Burnham Institute for Medical Research, La Jolla, CA 92037, USA"],"affiliations":[{"raw_affiliation_string":"1Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2State Scientific Center GosNIIGenetika, Moscow 117545, 3Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow 127994, 4Faculty of Bioengineering and Bioinformatics, Moscow State University, Moscow 119992, Russia, 5Department of Bioengineering, University of California, Berkeley, CA 94704-3224, 6Department of Energy Joint Genome Institute, Walnut Creek, CA 94598 and 7Burnham Institute for Medical Research, La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I4210107660","https://openalex.org/I1313323035","https://openalex.org/I19880235","https://openalex.org/I148283060","https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066623854","display_name":"Adam P. Arkin","orcid":"https://orcid.org/0000-0002-4999-2931"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]},{"id":"https://openalex.org/I4210107660","display_name":"Institute for Information Transmission Problems","ror":"https://ror.org/013w2d378","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210097085","https://openalex.org/I4210107660"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]},{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I1313323035","display_name":"Russian Academy of Sciences","ror":"https://ror.org/05qrfxd25","country_code":"RU","type":"funder","lineage":["https://openalex.org/I1313323035"]}],"countries":["RU","US"],"is_corresponding":false,"raw_author_name":"Adam P. Arkin","raw_affiliation_strings":["1Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2State Scientific Center GosNIIGenetika, Moscow 117545, 3Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow 127994, 4Faculty of Bioengineering and Bioinformatics, Moscow State University, Moscow 119992, Russia, 5Department of Bioengineering, University of California, Berkeley, CA 94704-3224, 6Department of Energy Joint Genome Institute, Walnut Creek, CA 94598 and 7Burnham Institute for Medical Research, La Jolla, CA 92037, USA"],"affiliations":[{"raw_affiliation_string":"1Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2State Scientific Center GosNIIGenetika, Moscow 117545, 3Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow 127994, 4Faculty of Bioengineering and Bioinformatics, Moscow State University, Moscow 119992, Russia, 5Department of Bioengineering, University of California, Berkeley, CA 94704-3224, 6Department of Energy Joint Genome Institute, Walnut Creek, CA 94598 and 7Burnham Institute for Medical Research, La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I4210107660","https://openalex.org/I1313323035","https://openalex.org/I19880235","https://openalex.org/I148283060","https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107834893","display_name":"Inna Dubchak","orcid":null},"institutions":[{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]},{"id":"https://openalex.org/I1313323035","display_name":"Russian Academy of Sciences","ror":"https://ror.org/05qrfxd25","country_code":"RU","type":"funder","lineage":["https://openalex.org/I1313323035"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]},{"id":"https://openalex.org/I4210107660","display_name":"Institute for Information Transmission Problems","ror":"https://ror.org/013w2d378","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210097085","https://openalex.org/I4210107660"]},{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["RU","US"],"is_corresponding":false,"raw_author_name":"Inna Dubchak","raw_affiliation_strings":["1Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2State Scientific Center GosNIIGenetika, Moscow 117545, 3Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow 127994, 4Faculty of Bioengineering and Bioinformatics, Moscow State University, Moscow 119992, Russia, 5Department of Bioengineering, University of California, Berkeley, CA 94704-3224, 6Department of Energy Joint Genome Institute, Walnut Creek, CA 94598 and 7Burnham Institute for Medical Research, La Jolla, CA 92037, USA"],"affiliations":[{"raw_affiliation_string":"1Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2State Scientific Center GosNIIGenetika, Moscow 117545, 3Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow 127994, 4Faculty of Bioengineering and Bioinformatics, Moscow State University, Moscow 119992, Russia, 5Department of Bioengineering, University of California, Berkeley, CA 94704-3224, 6Department of Energy Joint Genome Institute, Walnut Creek, CA 94598 and 7Burnham Institute for Medical Research, La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I4210107660","https://openalex.org/I1313323035","https://openalex.org/I19880235","https://openalex.org/I148283060","https://openalex.org/I95457486"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041084611","display_name":"Dmitry A. Rodionov","orcid":"https://orcid.org/0000-0002-0939-390X"},"institutions":[{"id":"https://openalex.org/I4210107660","display_name":"Institute for Information Transmission Problems","ror":"https://ror.org/013w2d378","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210097085","https://openalex.org/I4210107660"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I1313323035","display_name":"Russian Academy of Sciences","ror":"https://ror.org/05qrfxd25","country_code":"RU","type":"funder","lineage":["https://openalex.org/I1313323035"]},{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]},{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["RU","US"],"is_corresponding":false,"raw_author_name":"Dmitry A. Rodionov","raw_affiliation_strings":["1Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2State Scientific Center GosNIIGenetika, Moscow 117545, 3Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow 127994, 4Faculty of Bioengineering and Bioinformatics, Moscow State University, Moscow 119992, Russia, 5Department of Bioengineering, University of California, Berkeley, CA 94704-3224, 6Department of Energy Joint Genome Institute, Walnut Creek, CA 94598 and 7Burnham Institute for Medical Research, La Jolla, CA 92037, USA"],"affiliations":[{"raw_affiliation_string":"1Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, 2State Scientific Center GosNIIGenetika, Moscow 117545, 3Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow 127994, 4Faculty of Bioengineering and Bioinformatics, Moscow State University, Moscow 119992, Russia, 5Department of Bioengineering, University of California, Berkeley, CA 94704-3224, 6Department of Energy Joint Genome Institute, Walnut Creek, CA 94598 and 7Burnham Institute for Medical Research, La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I4210107660","https://openalex.org/I1313323035","https://openalex.org/I19880235","https://openalex.org/I148283060","https://openalex.org/I95457486"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5007293969"],"corresponding_institution_ids":["https://openalex.org/I1313323035","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I19880235","https://openalex.org/I4210107660","https://openalex.org/I95457486"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":11.5259,"has_fulltext":true,"cited_by_count":178,"citation_normalized_percentile":{"value":0.98818076,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"38","issue":"suppl_1","first_page":"D111","last_page":"D118"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9422581791877747},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5291491150856018},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4924648702144623},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4154478907585144},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.3557635545730591}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9422581791877747},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5291491150856018},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4924648702144623},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4154478907585144},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3557635545730591},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009876","descriptor_name":"Operon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009876","descriptor_name":"Operon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009876","descriptor_name":"Operon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkp894","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp894","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D111/11217910/gkp894.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:19884135","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19884135","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:ark:/13030/qt0nn4z3xz","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:escholarship.org/ark:/13030/qt0nn4z3xz","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/0nn4z3xz","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic acids research, vol 38, iss Database issue","raw_type":"article"},{"id":"pmh:oai:open-archive.highwire.org:nar:38/suppl_1/D111","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/38/suppl_1/D111","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:2808921","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2808921","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkp894","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp894","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D111/11217910/gkp894.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.550000011920929}],"awards":[{"id":"https://openalex.org/G1286236842","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1337544421","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G3083819904","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3944918260","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G425189044","display_name":null,"funder_award_id":"DE-AC02-05CH","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G4501827968","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4565140552","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4610648879","display_name":null,"funder_award_id":"DE-AC02-05CH112","funder_id":"https://openalex.org/F4320338292","funder_display_name":"Lawrence Berkeley National Laboratory"},{"id":"https://openalex.org/G4841871747","display_name":null,"funder_award_id":"DE_AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4979187122","display_name":null,"funder_award_id":"DE-AC02-05CH1123","funder_id":"https://openalex.org/F4320338292","funder_display_name":"Lawrence Berkeley National Laboratory"},{"id":"https://openalex.org/G498139845","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G5315912995","display_name":null,"funder_award_id":"11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G5719112107","display_name":"Extending the RAST Server to Support Reconstruction and Modeling of Cellular Networks","funder_award_id":"0850546","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5802748842","display_name":null,"funder_award_id":"DE-AC02-05CH112","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G6330738325","display_name":null,"funder_award_id":"DE_AC02_05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6348972864","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6429026066","display_name":null,"funder_award_id":"DE-AC02-05CH112","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6558272803","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7233692708","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7340683655","display_name":null,"funder_award_id":"E-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7354628648","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320338292","funder_display_name":"Lawrence Berkeley National Laboratory"},{"id":"https://openalex.org/G7406122311","display_name":null,"funder_award_id":"AC02-05CH1123","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7629237052","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G7664691372","display_name":null,"funder_award_id":"DE-AC02-05CH1123","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G7787287669","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G7825954517","display_name":null,"funder_award_id":"DE-AC02-05CH1123","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7908228807","display_name":null,"funder_award_id":"Molecular","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8306346728","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320338292","funder_display_name":"Lawrence Berkeley National Laboratory"},{"id":"https://openalex.org/G8413608756","display_name":null,"funder_award_id":"DE-AC02-05CH1123","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G8414908677","display_name":null,"funder_award_id":"DE-AC0","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8673401335","display_name":null,"funder_award_id":"08-04","funder_id":"https://openalex.org/F4320334801","funder_display_name":"Russian Academy of Sciences"},{"id":"https://openalex.org/G897164627","display_name":null,"funder_award_id":"DE-AC02_05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320334801","display_name":"Russian Academy of Sciences","ror":"https://ror.org/05qrfxd25"},{"id":"https://openalex.org/F4320337509","display_name":"Biological and Environmental Research","ror":"https://ror.org/0114b2m14"},{"id":"https://openalex.org/F4320338292","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2152269861.pdf","grobid_xml":"https://content.openalex.org/works/W2152269861.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W1524672894","https://openalex.org/W1574079093","https://openalex.org/W1576604674","https://openalex.org/W1581207974","https://openalex.org/W1584128039","https://openalex.org/W1994328828","https://openalex.org/W1994386933","https://openalex.org/W1999309464","https://openalex.org/W2043915983","https://openalex.org/W2053781861","https://openalex.org/W2054403143","https://openalex.org/W2060350133","https://openalex.org/W2073855515","https://openalex.org/W2078034546","https://openalex.org/W2098052627","https://openalex.org/W2101292724","https://openalex.org/W2103184043","https://openalex.org/W2104704368","https://openalex.org/W2105222452","https://openalex.org/W2105305331","https://openalex.org/W2107522712","https://openalex.org/W2114034054","https://openalex.org/W2116406836","https://openalex.org/W2119958068","https://openalex.org/W2124094019","https://openalex.org/W2124681451","https://openalex.org/W2124934039","https://openalex.org/W2127057035","https://openalex.org/W2130313341","https://openalex.org/W2137285295","https://openalex.org/W2139324374","https://openalex.org/W2140794624","https://openalex.org/W2148820057","https://openalex.org/W2152979636","https://openalex.org/W2154386202","https://openalex.org/W2155208299","https://openalex.org/W2158266834","https://openalex.org/W2159774536","https://openalex.org/W2166535540","https://openalex.org/W2166894101","https://openalex.org/W2167960095","https://openalex.org/W2172222116","https://openalex.org/W6634422982"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W2151865869","https://openalex.org/W2061542922"],"abstract_inverted_index":{"The":[0,50,71,132],"RegPrecise":[1,72],"database":[2,137,189],"(http://regprecise.lbl.gov)":[3],"was":[4],"developed":[5],"for":[6,44,74,89,101,144,178],"capturing,":[7],"visualization":[8],"and":[9,21,60,86,169,172],"analysis":[10],"of":[11,33,36,48,82,99,104,109,116,135,149,158,176,182,193],"predicted":[12],"transcription":[13,54,67,105,150,183],"factor":[14,68],"regulons":[15,52,100,110,119,177],"in":[16,111,129,167,187],"prokaryotes":[17],"that":[18],"were":[19],"reconstructed":[20,51],"manually":[22],"curated":[23],"by":[24,163],"utilizing":[25],"the":[26,65,76,136,179,188,191,198],"comparative":[27],"genomic":[28],"approach.":[29],"A":[30],"significant":[31],"number":[32],"high-quality":[34],"inferences":[35],"transcriptional":[37],"regulatory":[38],"interactions":[39],"have":[40],"been":[41],"already":[42],"accumulated":[43],"diverse":[45,94],"taxonomic":[46,95,114],"groups":[47,148],"bacteria.":[49],"include":[53],"factors,":[55],"their":[56],"cognate":[57],"DNA":[58,83],"motifs":[59],"regulated":[61,87],"genes/operons":[62],"linked":[63],"to":[64,197],"candidate":[66,141],"binding":[69,84,142],"sites.":[70],"allows":[73],"browsing":[75],"regulon":[77,92,165,195],"collections":[78],"for:":[79],"(i)":[80],"conservation":[81],"sites":[85,143],"genes":[88],"a":[90,102,112,122,126,173],"particular":[91,113],"across":[93],"lineages;":[96],"(ii)":[97],"sets":[98],"family":[103,181],"factors;":[106],"(iii)":[107],"repertoire":[108],"group":[115],"species;":[117],"(iv)":[118],"associated":[120],"with":[121],"metabolic":[123],"pathway":[124],"or":[125],"biological":[127],"process":[128],"various":[130],"genomes.":[131,156,201],"initial":[133],"release":[134],"includes":[138],"approximately":[139,145],"11,500":[140],"400":[146],"orthologous":[147],"factors":[151],"from":[152],"over":[153],"350":[154],"prokaryotic":[155],"Majority":[157],"these":[159],"data":[160],"are":[161],"represented":[162],"genome-wide":[164],"reconstructions":[166],"Shewanella":[168],"Streptococcus":[170],"genera":[171],"large-scale":[174],"prediction":[175],"LacI":[180],"factors.":[184],"Another":[185],"section":[186],"represents":[190],"results":[192],"accurate":[194],"propagation":[196],"closely":[199],"related":[200]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":14},{"year":2015,"cited_by_count":18},{"year":2014,"cited_by_count":19},{"year":2013,"cited_by_count":28},{"year":2012,"cited_by_count":27}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}
