{"id":"https://openalex.org/W2144159776","doi":"https://doi.org/10.1093/nar/gkp852","title":"BioDrugScreen: a computational drug design resource for ranking molecules docked to the human proteome","display_name":"BioDrugScreen: a computational drug design resource for ranking molecules docked to the human proteome","publication_year":2009,"publication_date":"2009-11-18","ids":{"openalex":"https://openalex.org/W2144159776","doi":"https://doi.org/10.1093/nar/gkp852","mag":"2144159776","pmid":"https://pubmed.ncbi.nlm.nih.gov/19923229"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkp852","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp852","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D765/11217765/gkp852.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D765/11217765/gkp852.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103403456","display_name":"Liwei Li","orcid":null},"institutions":[{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Liwei Li","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN, USA","Indiana University, Bloomington, United States"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN, USA","institution_ids":["https://openalex.org/I55769427","https://openalex.org/I4394709130"]},{"raw_affiliation_string":"Indiana University, Bloomington, United States","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086068457","display_name":"Khuchtumur Bum\u2010Erdene","orcid":"https://orcid.org/0000-0003-3222-7384"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Khuchtumur Bum-Erdene","raw_affiliation_strings":["1Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN, USA, 2Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, IN, USA and 3Community Grids Laboratory of the Pervasive Technology Institute, Indiana University, Bloomington, IN, USA","Indiana University, Bloomington, United States"],"affiliations":[{"raw_affiliation_string":"1Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN, USA, 2Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, IN, USA and 3Community Grids Laboratory of the Pervasive Technology Institute, Indiana University, Bloomington, IN, USA","institution_ids":["https://openalex.org/I4210119109","https://openalex.org/I55769427"]},{"raw_affiliation_string":"Indiana University, Bloomington, United States","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049518790","display_name":"Peter H. Baenziger","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter H. Baenziger","raw_affiliation_strings":["1Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN, USA, 2Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, IN, USA and 3Community Grids Laboratory of the Pervasive Technology Institute, Indiana University, Bloomington, IN, USA","Indiana University, Bloomington, United States"],"affiliations":[{"raw_affiliation_string":"1Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN, USA, 2Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, IN, USA and 3Community Grids Laboratory of the Pervasive Technology Institute, Indiana University, Bloomington, IN, USA","institution_ids":["https://openalex.org/I4210119109","https://openalex.org/I55769427"]},{"raw_affiliation_string":"Indiana University, Bloomington, United States","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054405310","display_name":"Joshua J. Rosen","orcid":"https://orcid.org/0000-0001-5420-033X"},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]},{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joshua J. Rosen","raw_affiliation_strings":["1Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN, USA, 2Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, IN, USA and 3Community Grids Laboratory of the Pervasive Technology Institute, Indiana University, Bloomington, IN, USA","Indiana University, Bloomington, United States"],"affiliations":[{"raw_affiliation_string":"1Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN, USA, 2Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, IN, USA and 3Community Grids Laboratory of the Pervasive Technology Institute, Indiana University, Bloomington, IN, USA","institution_ids":["https://openalex.org/I4210119109","https://openalex.org/I55769427"]},{"raw_affiliation_string":"Indiana University, Bloomington, United States","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069033008","display_name":"Jamison R. Hemmert","orcid":null},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]},{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jamison R. Hemmert","raw_affiliation_strings":["1Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN, USA, 2Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, IN, USA and 3Community Grids Laboratory of the Pervasive Technology Institute, Indiana University, Bloomington, IN, USA","Indiana University, Bloomington, United States"],"affiliations":[{"raw_affiliation_string":"1Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN, USA, 2Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, IN, USA and 3Community Grids Laboratory of the Pervasive Technology Institute, Indiana University, Bloomington, IN, USA","institution_ids":["https://openalex.org/I4210119109","https://openalex.org/I55769427"]},{"raw_affiliation_string":"Indiana University, Bloomington, United States","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013009664","display_name":"Joy A. Nellis","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joy A. Nellis","raw_affiliation_strings":["1Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN, USA, 2Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, IN, USA and 3Community Grids Laboratory of the Pervasive Technology Institute, Indiana University, Bloomington, IN, USA","Indiana University, Bloomington, United States"],"affiliations":[{"raw_affiliation_string":"1Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN, USA, 2Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, IN, USA and 3Community Grids Laboratory of the Pervasive Technology Institute, Indiana University, Bloomington, IN, USA","institution_ids":["https://openalex.org/I4210119109","https://openalex.org/I55769427"]},{"raw_affiliation_string":"Indiana University, Bloomington, United States","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082786549","display_name":"Marlon Pierce","orcid":"https://orcid.org/0000-0002-9582-5712"},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]},{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marlon E. Pierce","raw_affiliation_strings":["1Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN, USA, 2Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, IN, USA and 3Community Grids Laboratory of the Pervasive Technology Institute, Indiana University, Bloomington, IN, USA","Indiana University, Bloomington, United States"],"affiliations":[{"raw_affiliation_string":"1Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN, USA, 2Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, IN, USA and 3Community Grids Laboratory of the Pervasive Technology Institute, Indiana University, Bloomington, IN, USA","institution_ids":["https://openalex.org/I4210119109","https://openalex.org/I55769427"]},{"raw_affiliation_string":"Indiana University, Bloomington, United States","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055133888","display_name":"Samy O. Meroueh","orcid":"https://orcid.org/0000-0002-3948-7499"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Samy O. Meroueh","raw_affiliation_strings":["1Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN, USA, 2Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, IN, USA and 3Community Grids Laboratory of the Pervasive Technology Institute, Indiana University, Bloomington, IN, USA","Indiana University, Bloomington, United States"],"affiliations":[{"raw_affiliation_string":"1Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN, USA, 2Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, IN, USA and 3Community Grids Laboratory of the Pervasive Technology Institute, Indiana University, Bloomington, IN, USA","institution_ids":["https://openalex.org/I4210119109","https://openalex.org/I55769427"]},{"raw_affiliation_string":"Indiana University, Bloomington, United States","institution_ids":["https://openalex.org/I4210119109"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5103403456"],"corresponding_institution_ids":["https://openalex.org/I4210119109","https://openalex.org/I4394709130","https://openalex.org/I55769427"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.84,"has_fulltext":true,"cited_by_count":31,"citation_normalized_percentile":{"value":0.90889337,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"38","issue":"suppl_1","first_page":"D765","last_page":"D773"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9912999868392944,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9891999959945679,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/druggability","display_name":"Druggability","score":0.8602523803710938},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6525082588195801},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.6432104110717773},{"id":"https://openalex.org/keywords/human-proteome-project","display_name":"Human proteome project","score":0.6044869422912598},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.6027080416679382},{"id":"https://openalex.org/keywords/autodock","display_name":"AutoDock","score":0.5891862511634827},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5764206647872925},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.5644171237945557},{"id":"https://openalex.org/keywords/drugbank","display_name":"DrugBank","score":0.5221921801567078},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.4482302665710449},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3886626958847046},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.2919778823852539},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.22351771593093872},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.17856347560882568},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.16672441363334656},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.15691164135932922},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07823184132575989}],"concepts":[{"id":"https://openalex.org/C10679952","wikidata":"https://www.wikidata.org/wiki/Q5308937","display_name":"Druggability","level":3,"score":0.8602523803710938},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6525082588195801},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.6432104110717773},{"id":"https://openalex.org/C94795543","wikidata":"https://www.wikidata.org/wiki/Q3813754","display_name":"Human proteome project","level":4,"score":0.6044869422912598},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.6027080416679382},{"id":"https://openalex.org/C2780152424","wikidata":"https://www.wikidata.org/wiki/Q4826062","display_name":"AutoDock","level":4,"score":0.5891862511634827},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5764206647872925},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.5644171237945557},{"id":"https://openalex.org/C155261790","wikidata":"https://www.wikidata.org/wiki/Q1122544","display_name":"DrugBank","level":3,"score":0.5221921801567078},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.4482302665710449},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3886626958847046},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.2919778823852539},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.22351771593093872},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.17856347560882568},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.16672441363334656},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.15691164135932922},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07823184132575989},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D004353","descriptor_name":"Drug Evaluation, Preclinical","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D004353","descriptor_name":"Drug Evaluation, Preclinical","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D004353","descriptor_name":"Drug Evaluation, Preclinical","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D004353","descriptor_name":"Drug Evaluation, Preclinical","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkp852","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp852","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D765/11217765/gkp852.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:19923229","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19923229","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:nar:38/suppl_1/D765","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/38/suppl_1/D765","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:2808957","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2808957","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:scholarworks.indianapolis.iu.edu:1805/22858","is_oa":false,"landing_page_url":"https://hdl.handle.net/1805/22858","pdf_url":null,"source":{"id":"https://openalex.org/S4306400987","display_name":"IUScholarWorks (Indiana University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I592451","host_organization_name":"Indiana University","host_organization_lineage":["https://openalex.org/I592451"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Publisher","raw_type":"Article"},{"id":"pmh:oai:scholarworks.iupui.edu:1805/22858","is_oa":true,"landing_page_url":"http://hdl.handle.net/1805/22858","pdf_url":null,"source":{"id":"https://openalex.org/S4306400987","display_name":"IUScholarWorks (Indiana University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I592451","host_organization_name":"Indiana University","host_organization_lineage":["https://openalex.org/I592451"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Publisher","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkp852","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp852","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D765/11217765/gkp852.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2266038905","display_name":null,"funder_award_id":"METACyt","funder_id":"https://openalex.org/F4320307758","funder_display_name":"Eli Lilly and Company"},{"id":"https://openalex.org/G6894402473","display_name":null,"funder_award_id":"Fellowship","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320307758","display_name":"Eli Lilly and Company","ror":"https://ror.org/01qat3289"},{"id":"https://openalex.org/F4320307904","display_name":"Oracle","ror":"https://ror.org/006c77m33"},{"id":"https://openalex.org/F4320309409","display_name":"Lilly Endowment","ror":"https://ror.org/00cpsd622"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2144159776.pdf","grobid_xml":"https://content.openalex.org/works/W2144159776.grobid-xml"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W1505394602","https://openalex.org/W1526205344","https://openalex.org/W1605578858","https://openalex.org/W1656114533","https://openalex.org/W1914280947","https://openalex.org/W1977157176","https://openalex.org/W1977633077","https://openalex.org/W1981021420","https://openalex.org/W1985588649","https://openalex.org/W1986240377","https://openalex.org/W1993976538","https://openalex.org/W1995852445","https://openalex.org/W2003356525","https://openalex.org/W2009313526","https://openalex.org/W2012084558","https://openalex.org/W2017663720","https://openalex.org/W2021204780","https://openalex.org/W2031305384","https://openalex.org/W2037535298","https://openalex.org/W2045193453","https://openalex.org/W2047730466","https://openalex.org/W2050456292","https://openalex.org/W2061079400","https://openalex.org/W2072683434","https://openalex.org/W2074978477","https://openalex.org/W2078144380","https://openalex.org/W2098312592","https://openalex.org/W2109607974","https://openalex.org/W2112109058","https://openalex.org/W2112878061","https://openalex.org/W2114563838","https://openalex.org/W2114779636","https://openalex.org/W2115339329","https://openalex.org/W2118233996","https://openalex.org/W2118587156","https://openalex.org/W2120138074","https://openalex.org/W2127553917","https://openalex.org/W2128332459","https://openalex.org/W2147067341","https://openalex.org/W2158534713","https://openalex.org/W2165526004","https://openalex.org/W2170146596","https://openalex.org/W2171234651","https://openalex.org/W2176516200","https://openalex.org/W3118863970","https://openalex.org/W6631666057","https://openalex.org/W6647024140"],"related_works":["https://openalex.org/W2167061681","https://openalex.org/W2516475640","https://openalex.org/W2981913511","https://openalex.org/W2330170073","https://openalex.org/W2947297342","https://openalex.org/W3095231304","https://openalex.org/W2980375059","https://openalex.org/W2964571001","https://openalex.org/W3113160275","https://openalex.org/W2144159776"],"abstract_inverted_index":{"BioDrugScreen":[0,53,85],"is":[1],"a":[2,9,140],"resource":[3,86],"for":[4,76,156],"ranking":[5],"molecules":[6,20,149],"docked":[7,29],"against":[8],"large":[10],"number":[11],"of":[12,79],"targets":[13,37,51],"in":[14,39,52,89],"the":[15,22,48,68,77,84,96,121,136],"human":[16,36],"proteome.":[17],"Nearly":[18],"1600":[19],"from":[21,55],"freely":[23],"available":[24],"NCI":[25],"diversity":[26],"set":[27],"were":[28],"onto":[30],"1926":[31],"cavities":[32],"identified":[33],"on":[34,47,135],"1589":[35],"resulting":[38],">3":[40],"million":[41],"receptor-ligand":[42,93],"complexes":[43,94,122],"requiring":[44,130],">200,000":[45],"cpu-hours":[46,134],"TeraGrid.":[49,137],"The":[50,92],"originated":[54],"Human":[56,69],"Cancer":[57],"Protein":[58],"Interaction":[59],"Network,":[60],"which":[61,72],"we":[62,73,118],"have":[63,74,119],"updated,":[64],"as":[65,67],"well":[66],"Druggable":[70],"Proteome,":[71],"created":[75],"purpose":[78],"this":[80],"effort.":[81],"This":[82],"makes":[83],"highly":[87],"valuable":[88],"drug":[90],"discovery.":[91],"within":[95],"database":[97],"can":[98],"be":[99],"ranked":[100],"using":[101],"standard":[102],"and":[103,114,127,150,153],"well-established":[104],"scoring":[105],"functions":[106],"like":[107],"AutoDock,":[108],"DockScore,":[109],"ChemScore,":[110],"X-Score,":[111],"GoldScore,":[112],"DFIRE":[113],"PMF.":[115],"In":[116],"addition,":[117],"scored":[120],"with":[123],"more":[124],"intensive":[125],"GBSA":[126],"PBSA":[128],"approaches":[129],"an":[131],"additional":[132],"120,000":[133],"We":[138],"constructed":[139],"simple":[141],"interface":[142],"to":[143,146],"enable":[144],"users":[145],"view":[147],"top-ranking":[148],"access":[151],"purchasing":[152],"other":[154],"information":[155],"further":[157],"experimental":[158],"exploration.":[159]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":2}],"updated_date":"2026-03-27T14:29:43.386196","created_date":"2025-10-10T00:00:00"}
