{"id":"https://openalex.org/W2129872128","doi":"https://doi.org/10.1093/nar/gkp850","title":"Pathema: a clade-specific bioinformatics resource center for pathogen research","display_name":"Pathema: a clade-specific bioinformatics resource center for pathogen research","publication_year":2009,"publication_date":"2009-10-20","ids":{"openalex":"https://openalex.org/W2129872128","doi":"https://doi.org/10.1093/nar/gkp850","mag":"2129872128"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkp850","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp850","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D408/16771657/gkp850.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D408/16771657/gkp850.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083686393","display_name":"Lauren Brinkac","orcid":"https://orcid.org/0000-0002-7549-7280"},"institutions":[{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]},{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Lauren M. Brinkac","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050911066","display_name":"Tanja Davidsen","orcid":null},"institutions":[{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]},{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tanja Davidsen","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088696166","display_name":"Erin Beck","orcid":"https://orcid.org/0000-0001-7839-7958"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Erin Beck","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046188403","display_name":"Anuradha Ganapathy","orcid":null},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anuradha Ganapathy","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018119809","display_name":"Elisabet Caler","orcid":null},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Elisabet Caler","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091135427","display_name":"Robert J. Dodson","orcid":null},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert J. Dodson","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046011773","display_name":"A. Scott Durkin","orcid":null},"institutions":[{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]},{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. Scott Durkin","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071328878","display_name":"Derek M. Harkins","orcid":"https://orcid.org/0000-0002-4704-0275"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Derek M. Harkins","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062368051","display_name":"Hern\u00e1n Lorenzi","orcid":"https://orcid.org/0000-0003-0910-7894"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hernan Lorenzi","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008892080","display_name":"Ramana Madupu","orcid":null},"institutions":[{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]},{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ramana Madupu","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069841715","display_name":"Yinong Sebastian","orcid":null},"institutions":[{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]},{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yinong Sebastian","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082221659","display_name":"Susmita Shrivastava","orcid":"https://orcid.org/0000-0001-8252-2926"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Susmita Shrivastava","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077996792","display_name":"Mathangi Thiagarajan","orcid":"https://orcid.org/0000-0003-3190-2691"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mathangi Thiagarajan","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021032929","display_name":"Joshua Orvis","orcid":"https://orcid.org/0000-0002-5705-5710"},"institutions":[{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]},{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joshua Orvis","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084313881","display_name":"Jaideep P. Sundaram","orcid":null},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jaideep P. Sundaram","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102152463","display_name":"Jonathon Crabtree","orcid":null},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jonathon Crabtree","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075429023","display_name":"Kevin Galens","orcid":null},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kevin Galens","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041061250","display_name":"Yongmei Zhao","orcid":"https://orcid.org/0000-0003-0800-4658"},"institutions":[{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]},{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yongmei Zhao","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073305770","display_name":"Jason Inman","orcid":"https://orcid.org/0000-0002-8544-3286"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jason M. Inman","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036225070","display_name":"Robert A. Montgomery","orcid":"https://orcid.org/0000-0001-9914-6082"},"institutions":[{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]},{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert Montgomery","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077249762","display_name":"Seth Schobel","orcid":"https://orcid.org/0000-0002-8967-257X"},"institutions":[{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]},{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Seth Schobel","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091728982","display_name":"Kevin Galinsky","orcid":"https://orcid.org/0000-0003-0311-4938"},"institutions":[{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]},{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kevin Galinsky","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035819672","display_name":"David M. Tanenbaum","orcid":"https://orcid.org/0000-0002-6070-8882"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David M. Tanenbaum","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086085263","display_name":"Adam Resnick","orcid":"https://orcid.org/0000-0003-0436-4189"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam Resnick","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108365468","display_name":"Nikhat Zafar","orcid":null},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nikhat Zafar","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067205063","display_name":"Owen White","orcid":"https://orcid.org/0000-0001-7406-7361"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Owen White","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028284504","display_name":"Granger Sutton","orcid":"https://orcid.org/0000-0001-7498-8048"},"institutions":[{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]},{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Granger Sutton","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":27,"corresponding_author_ids":["https://openalex.org/A5083686393"],"corresponding_institution_ids":["https://openalex.org/I126744593","https://openalex.org/I6059380"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.2973,"has_fulltext":false,"cited_by_count":21,"citation_normalized_percentile":{"value":0.81756681,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"38","issue":"suppl_1","first_page":"D408","last_page":"D414"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12951","display_name":"Burkholderia infections and melioidosis","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12951","display_name":"Burkholderia infections and melioidosis","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11578","display_name":"Plant Pathogenic Bacteria Studies","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12824","display_name":"Infections and bacterial resistance","score":0.9524000287055969,"subfield":{"id":"https://openalex.org/subfields/1310","display_name":"Endocrinology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8176669478416443},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5275630354881287},{"id":"https://openalex.org/keywords/clade","display_name":"Clade","score":0.5110539197921753},{"id":"https://openalex.org/keywords/biodefense","display_name":"Biodefense","score":0.5086918473243713},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45902830362319946},{"id":"https://openalex.org/keywords/pathogen","display_name":"Pathogen","score":0.4527386426925659},{"id":"https://openalex.org/keywords/infectious-disease","display_name":"Infectious disease (medical specialty)","score":0.4226749837398529},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3410329818725586},{"id":"https://openalex.org/keywords/microbiology","display_name":"Microbiology","score":0.27506428956985474},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.23773282766342163},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.20001068711280823},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.14033085107803345}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8176669478416443},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5275630354881287},{"id":"https://openalex.org/C44465124","wikidata":"https://www.wikidata.org/wiki/Q713623","display_name":"Clade","level":4,"score":0.5110539197921753},{"id":"https://openalex.org/C2778545548","wikidata":"https://www.wikidata.org/wiki/Q4914739","display_name":"Biodefense","level":2,"score":0.5086918473243713},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45902830362319946},{"id":"https://openalex.org/C2776460866","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogen","level":2,"score":0.4527386426925659},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.4226749837398529},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3410329818725586},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.27506428956985474},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.23773282766342163},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.20001068711280823},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.14033085107803345},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkp850","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp850","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D408/16771657/gkp850.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmh:oai:open-archive.highwire.org:nar:38/suppl_1/D408","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/38/suppl_1/D408","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:2808925","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2808925","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkp850","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp850","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D408/16771657/gkp850.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.46000000834465027,"display_name":"Industry, innovation and infrastructure"},{"id":"https://metadata.un.org/sdg/17","score":0.4099999964237213,"display_name":"Partnerships for the goals"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320314788","display_name":"Lister Hill National Center for Biomedical Communications","ror":null},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2129872128.pdf","grobid_xml":"https://content.openalex.org/works/W2129872128.grobid-xml"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W129483469","https://openalex.org/W1824651387","https://openalex.org/W1969476807","https://openalex.org/W1975067044","https://openalex.org/W1982481323","https://openalex.org/W2000078078","https://openalex.org/W2000532294","https://openalex.org/W2006988954","https://openalex.org/W2007882663","https://openalex.org/W2008746869","https://openalex.org/W2010423470","https://openalex.org/W2015631535","https://openalex.org/W2024432852","https://openalex.org/W2046723738","https://openalex.org/W2055043387","https://openalex.org/W2055861190","https://openalex.org/W2061406721","https://openalex.org/W2061540282","https://openalex.org/W2061636126","https://openalex.org/W2065294096","https://openalex.org/W2068945309","https://openalex.org/W2083587510","https://openalex.org/W2100895966","https://openalex.org/W2102162073","https://openalex.org/W2102524090","https://openalex.org/W2103017472","https://openalex.org/W2105013839","https://openalex.org/W2105300849","https://openalex.org/W2106648515","https://openalex.org/W2107282968","https://openalex.org/W2110756631","https://openalex.org/W2113989263","https://openalex.org/W2123060905","https://openalex.org/W2123845161","https://openalex.org/W2133298156","https://openalex.org/W2133632576","https://openalex.org/W2134909813","https://openalex.org/W2138274020","https://openalex.org/W2141885858","https://openalex.org/W2151397621","https://openalex.org/W2151831732","https://openalex.org/W2152770371","https://openalex.org/W2160230331","https://openalex.org/W2161062388","https://openalex.org/W4210323379","https://openalex.org/W4240231372","https://openalex.org/W6680210522"],"related_works":["https://openalex.org/W2372405144","https://openalex.org/W2390453319","https://openalex.org/W1994926828","https://openalex.org/W1981462173","https://openalex.org/W2917032060","https://openalex.org/W2023537389","https://openalex.org/W2061933446","https://openalex.org/W2354517765","https://openalex.org/W4243966468","https://openalex.org/W103227439"],"abstract_inverted_index":{"Pathema":[0,39,99,140,169],"(&lt;inter-ref":[1],"locator=\"http://pathema.jcvi.org\"":[2],"locator-type=\"url\"&gt;http://pathema.jcvi.org&lt;/inter-ref&gt;)":[3],"is":[4,91],"one":[5,94],"of":[6,18,58,95,114,124,135,145,193],"the":[7,15,32,108,142,171,191],"eight":[8],"Bioinformatics":[9],"Resource":[10],"Centers":[11],"(BRCs)":[12],"funded":[13],"by":[14,178],"National":[16],"Institute":[17],"Allergy":[19],"and":[20,34,45,53,71,74,85,102,111,147,161,173,187],"Infectious":[21],"Disease":[22],"(NIAID)":[23],"designed":[24],"to":[25,41,106,158,165,190],"serve":[26],"as":[27],"a":[28,132],"core":[29],"resource":[30],"for":[31,49,137,196],"bio-defense":[33,172],"infectious":[35,174],"disease":[36,175],"research":[37,44,176],"community.":[38,117],"strives":[40],"support":[42],"basic":[43],"accelerate":[46],"scientific":[47,116,143],"progress":[48],"understanding,":[50],"detecting,":[51],"diagnosing":[52],"treating":[54],"an":[55],"established":[56],"set":[57],"six":[59],"target":[60,89,107],"NIAID":[61],"Category":[62,65,75],"A\u2013C":[63],"pathogens:":[64],"A":[66],"priority":[67,77],"pathogens;":[68,78],"&lt;it&gt;Bacillus":[69],"anthracis&lt;/it&gt;":[70],"&lt;it&gt;Clostridium":[72],"botulinum&lt;/it&gt;,":[73],"B":[76],"&lt;it&gt;Burkholderia":[79],"mallei,":[80],"Burkholderia":[81],"pseudomallei,":[82],"Clostridium":[83],"perfringens&lt;/it&gt;":[84],"&lt;it&gt;Entamoeba":[86],"histolytica.&lt;/it&gt;":[87],"Each":[88],"pathogen":[90,167,183],"represented":[92],"in":[93],"four":[96],"distinct":[97],"clade-specific":[98],"web":[100],"resources":[101],"underlying":[103],"databases":[104],"developed":[105],"specific":[109],"data":[110,149,180],"analysis":[112,155],"needs":[113],"each":[115],"All":[118],"publicly":[119],"available":[120],"complete":[121],"genome":[122,184],"projects":[123,186],"phylogenetically":[125],"related":[126,148],"organisms":[127,136],"are":[128],"also":[129],"represented,":[130],"providing":[131,188],"comprehensive":[133],"collection":[134],"comparative":[138],"analyses.":[139],"facilitates":[141],"exploration":[144],"genomic":[146],"through":[150],"its":[151],"integration":[152],"with":[153],"web-based":[154],"tools,":[156],"customized":[157],"obtain,":[159],"display,":[160],"compute":[162],"results":[163,192],"relevant":[164],"ongoing":[166],"research.":[168],"serves":[170],"community":[177],"disseminating":[179],"resulting":[181],"from":[182],"sequencing":[185],"access":[189],"inter-genomic":[194],"comparisons":[195],"these":[197],"organisms.":[198]},"counts_by_year":[{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
