{"id":"https://openalex.org/W2088918459","doi":"https://doi.org/10.1093/nar/gkp788","title":"Recode-2: new design, new search tools, and many more genes","display_name":"Recode-2: new design, new search tools, and many more genes","publication_year":2009,"publication_date":"2009-09-25","ids":{"openalex":"https://openalex.org/W2088918459","doi":"https://doi.org/10.1093/nar/gkp788","mag":"2088918459","pmid":"https://pubmed.ncbi.nlm.nih.gov/19783826"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkp788","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp788","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D69/11217642/gkp788.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D69/11217642/gkp788.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089972350","display_name":"Micha\u00ebl Bekaert","orcid":"https://orcid.org/0000-0002-1206-7654"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Micha\u00ebl Bekaert","raw_affiliation_strings":["School of Biology and Environmental Science, University College Dublin, BioSciences Institute, University College Cork, Ireland"],"affiliations":[{"raw_affiliation_string":"School of Biology and Environmental Science, University College Dublin, BioSciences Institute, University College Cork, Ireland","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007404143","display_name":"Andrew E. Firth","orcid":"https://orcid.org/0000-0002-7986-9520"},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]},{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I27577105","display_name":"University College Cork","ror":"https://ror.org/03265fv13","country_code":"IE","type":"education","lineage":["https://openalex.org/I27577105"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["IE","US"],"is_corresponding":false,"raw_author_name":"Andrew E. Firth","raw_affiliation_strings":["School of Biology and Environmental Science, University College Dublin, 2BioSciences Institute, University College Cork, Ireland, 3Division of Genetics, Department of Medicine, Brigham & Women's Hospital and Harvard Medical School, Boston, MA 02115, USA, 4Human Genetics Department, University of Utah, UT 84112 USA and 5Biochemistry Department, University College Cork, Ireland","Brigham and Women's Hospital, Boston, United States"],"affiliations":[{"raw_affiliation_string":"School of Biology and Environmental Science, University College Dublin, 2BioSciences Institute, University College Cork, Ireland, 3Division of Genetics, Department of Medicine, Brigham & Women's Hospital and Harvard Medical School, Boston, MA 02115, USA, 4Human Genetics Department, University of Utah, UT 84112 USA and 5Biochemistry Department, University College Cork, Ireland","institution_ids":["https://openalex.org/I27577105","https://openalex.org/I1283280774","https://openalex.org/I136199984","https://openalex.org/I100930933"]},{"raw_affiliation_string":"Brigham and Women's Hospital, Boston, United States","institution_ids":["https://openalex.org/I1283280774"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100456100","display_name":"Yan Zhang","orcid":"https://orcid.org/0000-0001-5440-1414"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I27577105","display_name":"University College Cork","ror":"https://ror.org/03265fv13","country_code":"IE","type":"education","lineage":["https://openalex.org/I27577105"]},{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]}],"countries":["IE","US"],"is_corresponding":false,"raw_author_name":"Yan Zhang","raw_affiliation_strings":["School of Biology and Environmental Science, University College Dublin, 2BioSciences Institute, University College Cork, Ireland, 3Division of Genetics, Department of Medicine, Brigham & Women's Hospital and Harvard Medical School, Boston, MA 02115, USA, 4Human Genetics Department, University of Utah, UT 84112 USA and 5Biochemistry Department, University College Cork, Ireland","Brigham and Women's Hospital, Boston, United States"],"affiliations":[{"raw_affiliation_string":"School of Biology and Environmental Science, University College Dublin, 2BioSciences Institute, University College Cork, Ireland, 3Division of Genetics, Department of Medicine, Brigham & Women's Hospital and Harvard Medical School, Boston, MA 02115, USA, 4Human Genetics Department, University of Utah, UT 84112 USA and 5Biochemistry Department, University College Cork, Ireland","institution_ids":["https://openalex.org/I27577105","https://openalex.org/I1283280774","https://openalex.org/I136199984","https://openalex.org/I100930933"]},{"raw_affiliation_string":"Brigham and Women's Hospital, Boston, United States","institution_ids":["https://openalex.org/I1283280774"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010080171","display_name":"Vadim N. Gladyshev","orcid":"https://orcid.org/0000-0002-0372-7016"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I27577105","display_name":"University College Cork","ror":"https://ror.org/03265fv13","country_code":"IE","type":"education","lineage":["https://openalex.org/I27577105"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]}],"countries":["IE","US"],"is_corresponding":false,"raw_author_name":"Vadim N. Gladyshev","raw_affiliation_strings":["School of Biology and Environmental Science, University College Dublin, 2BioSciences Institute, University College Cork, Ireland, 3Division of Genetics, Department of Medicine, Brigham & Women's Hospital and Harvard Medical School, Boston, MA 02115, USA, 4Human Genetics Department, University of Utah, UT 84112 USA and 5Biochemistry Department, University College Cork, Ireland","Brigham and Women's Hospital, Boston, United States"],"affiliations":[{"raw_affiliation_string":"School of Biology and Environmental Science, University College Dublin, 2BioSciences Institute, University College Cork, Ireland, 3Division of Genetics, Department of Medicine, Brigham & Women's Hospital and Harvard Medical School, Boston, MA 02115, USA, 4Human Genetics Department, University of Utah, UT 84112 USA and 5Biochemistry Department, University College Cork, Ireland","institution_ids":["https://openalex.org/I27577105","https://openalex.org/I1283280774","https://openalex.org/I136199984","https://openalex.org/I100930933"]},{"raw_affiliation_string":"Brigham and Women's Hospital, Boston, United States","institution_ids":["https://openalex.org/I1283280774"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033458397","display_name":"John F. Atkins","orcid":"https://orcid.org/0000-0001-7933-0165"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]},{"id":"https://openalex.org/I27577105","display_name":"University College Cork","ror":"https://ror.org/03265fv13","country_code":"IE","type":"education","lineage":["https://openalex.org/I27577105"]},{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]}],"countries":["IE","US"],"is_corresponding":false,"raw_author_name":"John F. Atkins","raw_affiliation_strings":["School of Biology and Environmental Science, University College Dublin, 2BioSciences Institute, University College Cork, Ireland, 3Division of Genetics, Department of Medicine, Brigham & Women's Hospital and Harvard Medical School, Boston, MA 02115, USA, 4Human Genetics Department, University of Utah, UT 84112 USA and 5Biochemistry Department, University College Cork, Ireland","Brigham and Women's Hospital, Boston, United States"],"affiliations":[{"raw_affiliation_string":"School of Biology and Environmental Science, University College Dublin, 2BioSciences Institute, University College Cork, Ireland, 3Division of Genetics, Department of Medicine, Brigham & Women's Hospital and Harvard Medical School, Boston, MA 02115, USA, 4Human Genetics Department, University of Utah, UT 84112 USA and 5Biochemistry Department, University College Cork, Ireland","institution_ids":["https://openalex.org/I27577105","https://openalex.org/I1283280774","https://openalex.org/I136199984","https://openalex.org/I100930933"]},{"raw_affiliation_string":"Brigham and Women's Hospital, Boston, United States","institution_ids":["https://openalex.org/I1283280774"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047187282","display_name":"Pavel V. Baranov","orcid":"https://orcid.org/0000-0001-9017-0270"},"institutions":[{"id":"https://openalex.org/I27577105","display_name":"University College Cork","ror":"https://ror.org/03265fv13","country_code":"IE","type":"education","lineage":["https://openalex.org/I27577105"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]},{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]}],"countries":["IE","US"],"is_corresponding":true,"raw_author_name":"Pavel V. Baranov","raw_affiliation_strings":["School of Biology and Environmental Science, University College Dublin, 2BioSciences Institute, University College Cork, Ireland, 3Division of Genetics, Department of Medicine, Brigham & Women's Hospital and Harvard Medical School, Boston, MA 02115, USA, 4Human Genetics Department, University of Utah, UT 84112 USA and 5Biochemistry Department, University College Cork, Ireland","Brigham and Women's Hospital, Boston, United States"],"affiliations":[{"raw_affiliation_string":"School of Biology and Environmental Science, University College Dublin, 2BioSciences Institute, University College Cork, Ireland, 3Division of Genetics, Department of Medicine, Brigham & Women's Hospital and Harvard Medical School, Boston, MA 02115, USA, 4Human Genetics Department, University of Utah, UT 84112 USA and 5Biochemistry Department, University College Cork, Ireland","institution_ids":["https://openalex.org/I27577105","https://openalex.org/I1283280774","https://openalex.org/I136199984","https://openalex.org/I100930933"]},{"raw_affiliation_string":"Brigham and Women's Hospital, Boston, United States","institution_ids":["https://openalex.org/I1283280774"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5047187282"],"corresponding_institution_ids":["https://openalex.org/I100930933","https://openalex.org/I1283280774","https://openalex.org/I136199984","https://openalex.org/I27577105"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.5533,"has_fulltext":false,"cited_by_count":62,"citation_normalized_percentile":{"value":0.89594967,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"38","issue":"suppl_1","first_page":"D69","last_page":"D74"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7005519866943359},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6304018497467041},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5796711444854736},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45755282044410706},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.451709121465683},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4489785432815552},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.42046108841896057},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.3985641598701477},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.34122055768966675}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7005519866943359},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6304018497467041},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5796711444854736},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45755282044410706},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.451709121465683},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4489785432815552},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.42046108841896057},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3985641598701477},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.34122055768966675}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014176","descriptor_name":"Protein Biosynthesis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014176","descriptor_name":"Protein Biosynthesis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014176","descriptor_name":"Protein Biosynthesis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018388","descriptor_name":"Codon, Terminator","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018388","descriptor_name":"Codon, Terminator","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018388","descriptor_name":"Codon, Terminator","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018965","descriptor_name":"Frameshifting, Ribosomal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018965","descriptor_name":"Frameshifting, Ribosomal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018965","descriptor_name":"Frameshifting, Ribosomal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/gkp788","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp788","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D69/11217642/gkp788.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:19783826","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19783826","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2808893","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2808893","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:cora.ucc.ie:10468/5029","is_oa":true,"landing_page_url":"http://hdl.handle.net/10468/5029","pdf_url":null,"source":{"id":"https://openalex.org/S4306400766","display_name":"Cork Open Research Archive (University College Cork)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I27577105","host_organization_name":"University College Cork","host_organization_lineage":["https://openalex.org/I27577105"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:dspace.stir.ac.uk:1893/7192","is_oa":false,"landing_page_url":"http://hdl.handle.net/1893/7192","pdf_url":null,"source":{"id":"https://openalex.org/S4306400268","display_name":"Stirling Online Research Repository (University of Stirling)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I12093191","host_organization_name":"University of Stirling","host_organization_lineage":["https://openalex.org/I12093191"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:open-archive.highwire.org:nar:38/suppl_1/D69","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/38/suppl_1/D69","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:www.lenus.ie:10147/94018","is_oa":false,"landing_page_url":"http://hdl.handle.net/10147/94018","pdf_url":null,"source":{"id":"https://openalex.org/S4306401756","display_name":"Lenus, The Irish Health Repository (Dr Steevens Hospital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":{"id":"doi:10.1093/nar/gkp788","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp788","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D69/11217642/gkp788.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2088918459.pdf","grobid_xml":"https://content.openalex.org/works/W2088918459.grobid-xml"},"referenced_works_count":64,"referenced_works":["https://openalex.org/W145780443","https://openalex.org/W202386156","https://openalex.org/W377429680","https://openalex.org/W1501074197","https://openalex.org/W1504367890","https://openalex.org/W1972906924","https://openalex.org/W1974025425","https://openalex.org/W1974597460","https://openalex.org/W1976522966","https://openalex.org/W1980381654","https://openalex.org/W1980888233","https://openalex.org/W1986966438","https://openalex.org/W1987560159","https://openalex.org/W1988511519","https://openalex.org/W1991657860","https://openalex.org/W2005674957","https://openalex.org/W2006986935","https://openalex.org/W2019054377","https://openalex.org/W2041816583","https://openalex.org/W2048449480","https://openalex.org/W2056145855","https://openalex.org/W2061856039","https://openalex.org/W2062350341","https://openalex.org/W2064370916","https://openalex.org/W2066306545","https://openalex.org/W2070936740","https://openalex.org/W2077825998","https://openalex.org/W2080929480","https://openalex.org/W2088110806","https://openalex.org/W2091528429","https://openalex.org/W2092708670","https://openalex.org/W2093702519","https://openalex.org/W2095770256","https://openalex.org/W2096525273","https://openalex.org/W2097954818","https://openalex.org/W2098838202","https://openalex.org/W2100759967","https://openalex.org/W2102375023","https://openalex.org/W2107534434","https://openalex.org/W2111720779","https://openalex.org/W2113675613","https://openalex.org/W2122996035","https://openalex.org/W2124064990","https://openalex.org/W2128360087","https://openalex.org/W2129815091","https://openalex.org/W2137382844","https://openalex.org/W2139733402","https://openalex.org/W2142490432","https://openalex.org/W2142886379","https://openalex.org/W2145826301","https://openalex.org/W2150818385","https://openalex.org/W2153184294","https://openalex.org/W2153463868","https://openalex.org/W2157483415","https://openalex.org/W2158157849","https://openalex.org/W2325916690","https://openalex.org/W2359380437","https://openalex.org/W3164064520","https://openalex.org/W4212865600","https://openalex.org/W4248959081","https://openalex.org/W4250297812","https://openalex.org/W4256438495","https://openalex.org/W6608139745","https://openalex.org/W6707201956"],"related_works":["https://openalex.org/W2059565715","https://openalex.org/W2901823680","https://openalex.org/W1999129612","https://openalex.org/W2116418175","https://openalex.org/W2009940763","https://openalex.org/W2126804125","https://openalex.org/W2946410450","https://openalex.org/W4361192415","https://openalex.org/W2137318037","https://openalex.org/W4386637333"],"abstract_inverted_index":{"'Recoding'":[0],"is":[1,89,160],"a":[2,31,60],"term":[3],"used":[4],"to":[5,55,62,101,107,141],"describe":[6],"non-standard":[7],"read-out":[8],"of":[9,34,43,50,73,82,95,117,123,148,156],"the":[10,65,85,96,129,153,157],"genetic":[11],"code,":[12],"and":[13,26,67,92,111,120],"encompasses":[14],"such":[15],"phenomena":[16],"as":[17],"programmed":[18],"ribosomal":[19],"frameshifting,":[20],"stop":[21],"codon":[22],"readthrough,":[23],"selenocysteine":[24],"insertion":[25],"translational":[27,109],"bypassing.":[28],"Although":[29],"only":[30],"small":[32],"proportion":[33],"genes":[35,45,105,137],"utilize":[36,108,142],"recoding":[37,83,110,118,143],"in":[38,64,144],"protein":[39],"synthesis,":[40],"accurate":[41],"annotation":[42,49],"'recoded'":[44],"lags":[46],"far":[47],"behind":[48],"'standard'":[51],"genes.":[52],"In":[53],"order":[54],"address":[56],"this":[57],"issue,":[58],"provide":[59],"service":[61],"researchers":[63],"field,":[66],"offer":[68],"training":[69],"data":[70,119],"for":[71],"developers":[72],"gene-annotation":[74],"software,":[75],"we":[76],"have":[77],"gathered":[78],"together":[79],"known":[80,106,140],"cases":[81],"within":[84],"Recode":[86],"database.":[87,97,158],"Recode-2":[88,130,159],"an":[90],"improved":[91],"updated":[93],"version":[94,155],"It":[98],"provides":[99],"access":[100],"detailed":[102],"information":[103,133],"on":[104,134],"allows":[112],"complex":[113],"search":[114],"queries,":[115],"browsing":[116],"enhanced":[121],"visualization":[122],"annotated":[124],"sequence":[125],"elements.":[126],"At":[127],"present,":[128],"database":[131],"stores":[132],"approximately":[135,149],"1500":[136],"that":[138],"are":[139],"their":[145],"expression--a":[146],"factor":[147],"three":[150],"increase":[151],"over":[152],"previous":[154],"available":[161],"at":[162],"http://recode.ucc.ie.":[163]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":13},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":6}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
