{"id":"https://openalex.org/W1979913878","doi":"https://doi.org/10.1093/nar/gkp484","title":"PLAN2L: a web tool for integrated text mining and literature-based bioentity relation extraction","display_name":"PLAN2L: a web tool for integrated text mining and literature-based bioentity relation extraction","publication_year":2009,"publication_date":"2009-06-11","ids":{"openalex":"https://openalex.org/W1979913878","doi":"https://doi.org/10.1093/nar/gkp484","mag":"1979913878","pmid":"https://pubmed.ncbi.nlm.nih.gov/19520768"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkp484","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp484","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W160/3975809/gkp484.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W160/3975809/gkp484.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007203127","display_name":"Martin Krallinger","orcid":"https://orcid.org/0000-0002-2646-8782"},"institutions":[{"id":"https://openalex.org/I4210147025","display_name":"Barcelona Media","ror":"https://ror.org/047yj9455","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210147025"]},{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"M. Krallinger","raw_affiliation_strings":["Structural Biology and Biocomputing programme, Spanish National Cancer Center (CNIO), Melchor Fernandez Almagro 3, Madrid, 28029, Spain. mkrallinger@cnio.es","Structural Biology and Biocomputing programme, Spanish National Cancer Center (CNIO), Melchor Fernandez Almagro 3, Madrid, 28029, Spain and 2Barcelona Media - Centre d'Innovacio, Av. Diagonal 177, 08018 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Structural Biology and Biocomputing programme, Spanish National Cancer Center (CNIO), Melchor Fernandez Almagro 3, Madrid, 28029, Spain. mkrallinger@cnio.es","institution_ids":["https://openalex.org/I4210089594"]},{"raw_affiliation_string":"Structural Biology and Biocomputing programme, Spanish National Cancer Center (CNIO), Melchor Fernandez Almagro 3, Madrid, 28029, Spain and 2Barcelona Media - Centre d'Innovacio, Av. Diagonal 177, 08018 Barcelona, Spain","institution_ids":["https://openalex.org/I4210089594","https://openalex.org/I4210147025"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044768193","display_name":"Carlos Gerardo Rodriguez-Penagos","orcid":"https://orcid.org/0000-0001-8744-0380"},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]},{"id":"https://openalex.org/I4210147025","display_name":"Barcelona Media","ror":"https://ror.org/047yj9455","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210147025"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"C. Rodriguez-Penagos","raw_affiliation_strings":["Structural Biology and Biocomputing programme, Spanish National Cancer Center (CNIO), Melchor Fernandez Almagro 3, Madrid, 28029, Spain and 2Barcelona Media - Centre d'Innovacio, Av. Diagonal 177, 08018 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Structural Biology and Biocomputing programme, Spanish National Cancer Center (CNIO), Melchor Fernandez Almagro 3, Madrid, 28029, Spain and 2Barcelona Media - Centre d'Innovacio, Av. Diagonal 177, 08018 Barcelona, Spain","institution_ids":["https://openalex.org/I4210089594","https://openalex.org/I4210147025"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048099130","display_name":"Ashish V. Tendulkar","orcid":null},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]},{"id":"https://openalex.org/I4210147025","display_name":"Barcelona Media","ror":"https://ror.org/047yj9455","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210147025"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"A. Tendulkar","raw_affiliation_strings":["Structural Biology and Biocomputing programme, Spanish National Cancer Center (CNIO), Melchor Fernandez Almagro 3, Madrid, 28029, Spain and 2Barcelona Media - Centre d'Innovacio, Av. Diagonal 177, 08018 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Structural Biology and Biocomputing programme, Spanish National Cancer Center (CNIO), Melchor Fernandez Almagro 3, Madrid, 28029, Spain and 2Barcelona Media - Centre d'Innovacio, Av. Diagonal 177, 08018 Barcelona, Spain","institution_ids":["https://openalex.org/I4210089594","https://openalex.org/I4210147025"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015217651","display_name":"Alfonso Valencia","orcid":"https://orcid.org/0000-0002-8937-6789"},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]},{"id":"https://openalex.org/I4210147025","display_name":"Barcelona Media","ror":"https://ror.org/047yj9455","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210147025"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"A. Valencia","raw_affiliation_strings":["Structural Biology and Biocomputing programme, Spanish National Cancer Center (CNIO), Melchor Fernandez Almagro 3, Madrid, 28029, Spain and 2Barcelona Media - Centre d'Innovacio, Av. Diagonal 177, 08018 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Structural Biology and Biocomputing programme, Spanish National Cancer Center (CNIO), Melchor Fernandez Almagro 3, Madrid, 28029, Spain and 2Barcelona Media - Centre d'Innovacio, Av. Diagonal 177, 08018 Barcelona, Spain","institution_ids":["https://openalex.org/I4210089594","https://openalex.org/I4210147025"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5007203127"],"corresponding_institution_ids":["https://openalex.org/I4210089594","https://openalex.org/I4210147025"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.2131,"has_fulltext":false,"cited_by_count":28,"citation_normalized_percentile":{"value":0.77308592,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"37","issue":"Web Server","first_page":"W160","last_page":"W165"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9853000044822693,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9652000069618225,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7804269194602966},{"id":"https://openalex.org/keywords/complement","display_name":"Complement (music)","score":0.6692875623703003},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.643861711025238},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.6139727830886841},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.5644921660423279},{"id":"https://openalex.org/keywords/arabidopsis-thaliana","display_name":"Arabidopsis thaliana","score":0.5222523808479309},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.5208114385604858},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49557340145111084},{"id":"https://openalex.org/keywords/root","display_name":"Root (linguistics)","score":0.41895782947540283},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.41845598816871643},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.37633299827575684},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3552341163158417},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.28228524327278137},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2665358781814575},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.25088250637054443},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17050772905349731}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7804269194602966},{"id":"https://openalex.org/C112313634","wikidata":"https://www.wikidata.org/wiki/Q7886648","display_name":"Complement (music)","level":5,"score":0.6692875623703003},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.643861711025238},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.6139727830886841},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.5644921660423279},{"id":"https://openalex.org/C2775988993","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Arabidopsis thaliana","level":4,"score":0.5222523808479309},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.5208114385604858},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49557340145111084},{"id":"https://openalex.org/C171078966","wikidata":"https://www.wikidata.org/wiki/Q111029","display_name":"Root (linguistics)","level":2,"score":0.41895782947540283},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.41845598816871643},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.37633299827575684},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3552341163158417},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.28228524327278137},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2665358781814575},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.25088250637054443},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17050772905349731},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.0},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.0},{"id":"https://openalex.org/C188082640","wikidata":"https://www.wikidata.org/wiki/Q1780899","display_name":"Complementation","level":4,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D026342","descriptor_name":"AGAMOUS Protein, Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D026342","descriptor_name":"AGAMOUS Protein, Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D026342","descriptor_name":"AGAMOUS Protein, Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029681","descriptor_name":"Arabidopsis Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029681","descriptor_name":"Arabidopsis Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029681","descriptor_name":"Arabidopsis Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkp484","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp484","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W160/3975809/gkp484.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:19520768","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19520768","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.584.4942","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.584.4942","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/37/suppl_2/W160.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:2703909","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2703909","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkp484","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp484","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W160/3975809/gkp484.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.7099999785423279,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1979913878.pdf","grobid_xml":"https://content.openalex.org/works/W1979913878.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1951838230","https://openalex.org/W2035967403","https://openalex.org/W2053673723","https://openalex.org/W2101727078","https://openalex.org/W2127603354","https://openalex.org/W2148395543","https://openalex.org/W2152497088","https://openalex.org/W2153438709","https://openalex.org/W2166592994","https://openalex.org/W2167865654","https://openalex.org/W2170381940"],"related_works":["https://openalex.org/W1788528807","https://openalex.org/W2394022102","https://openalex.org/W2725657302","https://openalex.org/W2393978999","https://openalex.org/W2153799433","https://openalex.org/W2367301249","https://openalex.org/W2379157006","https://openalex.org/W2352337653","https://openalex.org/W14859557","https://openalex.org/W43416609"],"abstract_inverted_index":{"There":[0],"is":[1,137],"an":[2],"increasing":[3],"interest":[4],"in":[5,74],"using":[6],"literature":[7],"mining":[8,34],"techniques":[9,38],"to":[10,39,68,86,94],"complement":[11],"information":[12,36,42,66],"extracted":[13],"from":[14,72],"annotation":[15],"databases":[16],"or":[17],"generated":[18],"by":[19],"bioinformatics":[20],"applications.":[21],"Here":[22],"we":[23],"present":[24],"PLAN2L,":[25],"a":[26,61],"web-based":[27],"online":[28],"search":[29],"system":[30,59],"that":[31],"integrates":[32],"text":[33],"and":[35,48,83,92,96,105,136],"extraction":[37],"access":[40],"systematically":[41],"useful":[43],"for":[44,121],"analyzing":[45],"genetic,":[46],"cellular":[47,95],"molecular":[49],"aspects":[50],"of":[51,65,80,89,114],"the":[52,78],"plant":[53],"model":[54],"organism":[55],"Arabidopsis":[56],"thaliana.":[57],"Our":[58],"facilitates":[60],"more":[62],"efficient":[63],"retrieval":[64],"relevant":[67],"heterogeneous":[69],"biological":[70,75],"topics,":[71],"implications":[73],"relationships":[76],"at":[77,140],"level":[79],"protein":[81],"interactions":[82],"gene":[84,90],"regulation,":[85],"sub-cellular":[87],"locations":[88],"products":[91],"associations":[93],"developmental":[97],"processes,":[98],"i.e.":[99],"cell":[100],"cycle,":[101],"flowering,":[102],"root,":[103],"leaf":[104],"seed":[106],"development.":[107],"Beyond":[108],"single":[109],"entities,":[110],"also":[111],"predefined":[112],"pairs":[113],"entities":[115],"can":[116],"be":[117],"provided":[118],"as":[119],"queries":[120],"which":[122],"literature-derived":[123],"relations":[124],"together":[125],"with":[126],"textual":[127],"evidences":[128],"are":[129],"returned.":[130],"PLAN2L":[131],"does":[132],"not":[133],"require":[134],"registration":[135],"freely":[138],"accessible":[139],"http://zope.bioinfo.cnio.es/plan2l.":[141]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":4}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
