{"id":"https://openalex.org/W2110595429","doi":"https://doi.org/10.1093/nar/gkp463","title":"G-SESAME: web tools for GO-term-based gene similarity analysis and knowledge discovery","display_name":"G-SESAME: web tools for GO-term-based gene similarity analysis and knowledge discovery","publication_year":2009,"publication_date":"2009-06-02","ids":{"openalex":"https://openalex.org/W2110595429","doi":"https://doi.org/10.1093/nar/gkp463","mag":"2110595429","pmid":"https://pubmed.ncbi.nlm.nih.gov/19491312"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkp463","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp463","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gkp463","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070659212","display_name":"Zhidian Du","orcid":"https://orcid.org/0009-0006-4802-066X"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Z. Du","raw_affiliation_strings":["School of Computing, Department of Genetics and Biochemistry, Clemson University, Clemson, SC 29634, USA"],"affiliations":[{"raw_affiliation_string":"School of Computing, Department of Genetics and Biochemistry, Clemson University, Clemson, SC 29634, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100361005","display_name":"Li Li","orcid":"https://orcid.org/0000-0001-6746-4297"},"institutions":[{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]},{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"L. Li","raw_affiliation_strings":["School of Computing, 2Department of Genetics and Biochemistry, Clemson University, Clemson, SC 29634 and 3Department of Computer Science, University of Illinois at Chicago, 851 S. Morgan St., Rm 1138 SEO, Chicago, IL 60607, USA"],"affiliations":[{"raw_affiliation_string":"School of Computing, 2Department of Genetics and Biochemistry, Clemson University, Clemson, SC 29634 and 3Department of Computer Science, University of Illinois at Chicago, 851 S. Morgan St., Rm 1138 SEO, Chicago, IL 60607, USA","institution_ids":["https://openalex.org/I39422238","https://openalex.org/I8078737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091178521","display_name":"Chiehfeng Chen","orcid":"https://orcid.org/0000-0002-1595-6553"},"institutions":[{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]},{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C.-F. Chen","raw_affiliation_strings":["School of Computing, 2Department of Genetics and Biochemistry, Clemson University, Clemson, SC 29634 and 3Department of Computer Science, University of Illinois at Chicago, 851 S. Morgan St., Rm 1138 SEO, Chicago, IL 60607, USA"],"affiliations":[{"raw_affiliation_string":"School of Computing, 2Department of Genetics and Biochemistry, Clemson University, Clemson, SC 29634 and 3Department of Computer Science, University of Illinois at Chicago, 851 S. Morgan St., Rm 1138 SEO, Chicago, IL 60607, USA","institution_ids":["https://openalex.org/I39422238","https://openalex.org/I8078737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036357902","display_name":"Philip S. Yu","orcid":"https://orcid.org/0000-0002-3491-5968"},"institutions":[{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]},{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"P. S. Yu","raw_affiliation_strings":["School of Computing, 2Department of Genetics and Biochemistry, Clemson University, Clemson, SC 29634 and 3Department of Computer Science, University of Illinois at Chicago, 851 S. Morgan St., Rm 1138 SEO, Chicago, IL 60607, USA"],"affiliations":[{"raw_affiliation_string":"School of Computing, 2Department of Genetics and Biochemistry, Clemson University, Clemson, SC 29634 and 3Department of Computer Science, University of Illinois at Chicago, 851 S. Morgan St., Rm 1138 SEO, Chicago, IL 60607, USA","institution_ids":["https://openalex.org/I39422238","https://openalex.org/I8078737"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100687159","display_name":"James Z. Wang","orcid":"https://orcid.org/0000-0003-4379-4173"},"institutions":[{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]},{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. Z. Wang","raw_affiliation_strings":["School of Computing, 2Department of Genetics and Biochemistry, Clemson University, Clemson, SC 29634 and 3Department of Computer Science, University of Illinois at Chicago, 851 S. Morgan St., Rm 1138 SEO, Chicago, IL 60607, USA"],"affiliations":[{"raw_affiliation_string":"School of Computing, 2Department of Genetics and Biochemistry, Clemson University, Clemson, SC 29634 and 3Department of Computer Science, University of Illinois at Chicago, 851 S. Morgan St., Rm 1138 SEO, Chicago, IL 60607, USA","institution_ids":["https://openalex.org/I39422238","https://openalex.org/I8078737"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5070659212"],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":3.5433,"has_fulltext":false,"cited_by_count":96,"citation_normalized_percentile":{"value":0.93506715,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":93,"max":99},"biblio":{"volume":"37","issue":"Web Server","first_page":"W345","last_page":"W349"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.771654486656189},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.7473994493484497},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5571672916412354},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.51786208152771},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4487784802913666},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.40608203411102295},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3988797068595886},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.38894641399383545},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.38713788986206055},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.37246575951576233},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3490654230117798},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.22249501943588257},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19047757983207703},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.0980621874332428},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.08440899848937988}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.771654486656189},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.7473994493484497},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5571672916412354},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.51786208152771},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4487784802913666},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.40608203411102295},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3988797068595886},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.38894641399383545},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.38713788986206055},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.37246575951576233},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3490654230117798},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.22249501943588257},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19047757983207703},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0980621874332428},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.08440899848937988},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkp463","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp463","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:19491312","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19491312","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2703883","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2703883","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkp463","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp463","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.46000000834465027,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W1659833910","https://openalex.org/W2103017472","https://openalex.org/W2126225210","https://openalex.org/W2127563440","https://openalex.org/W2128049108","https://openalex.org/W2133340731","https://openalex.org/W2134226301","https://openalex.org/W2148602507","https://openalex.org/W2953332543"],"related_works":["https://openalex.org/W2003333417","https://openalex.org/W2378862226","https://openalex.org/W118236634","https://openalex.org/W2355326633","https://openalex.org/W2804669904","https://openalex.org/W2149777447","https://openalex.org/W2347456287","https://openalex.org/W2121651557","https://openalex.org/W2782969047","https://openalex.org/W2393581236"],"abstract_inverted_index":{"We":[0],"have":[1,37],"developed":[2],"a":[3],"set":[4],"of":[5,13,22],"online":[6,55],"tools":[7,36,56],"for":[8,26,40],"measuring":[9],"the":[10,19,32],"semantic":[11],"similarities":[12,21],"Gene":[14],"Ontology":[15],"(GO)":[16],"terms":[17],"and":[18,25],"functional":[20],"gene":[23],"products,":[24],"further":[27],"discovering":[28],"biomedical":[29],"knowledge":[30],"from":[31,48],"GO":[33],"database.":[34],"The":[35,54],"been":[38],"used":[39],"about":[41],"6.9":[42],"million":[43],"times":[44],"by":[45],"417":[46],"institutions":[47],"43":[49],"countries":[50],"since":[51],"October":[52],"2006.":[53],"are":[57],"available":[58],"at:":[59],"http://bioinformatics.clemson.edu/G-SESAME.":[60]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":12},{"year":2013,"cited_by_count":12},{"year":2012,"cited_by_count":6}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
