{"id":"https://openalex.org/W2157702265","doi":"https://doi.org/10.1093/nar/gkp455","title":"A standardized framework for accurate, high-throughput genotyping of recombinant and non-recombinant viral sequences","display_name":"A standardized framework for accurate, high-throughput genotyping of recombinant and non-recombinant viral sequences","publication_year":2009,"publication_date":"2009-05-29","ids":{"openalex":"https://openalex.org/W2157702265","doi":"https://doi.org/10.1093/nar/gkp455","mag":"2157702265","pmid":"https://pubmed.ncbi.nlm.nih.gov/19483099"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkp455","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp455","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W634/3967291/gkp455.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W634/3967291/gkp455.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071835363","display_name":"Lu\u00edz Carlos J\u00fanior Alc\u00e2ntara","orcid":"https://orcid.org/0000-0002-6769-9931"},"institutions":[{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]},{"id":"https://openalex.org/I95023434","display_name":"University of KwaZulu-Natal","ror":"https://ror.org/04qzfn040","country_code":"ZA","type":"education","lineage":["https://openalex.org/I95023434"]},{"id":"https://openalex.org/I107920810","display_name":"National Health Laboratory Service","ror":"https://ror.org/00znvbk37","country_code":"ZA","type":"government","lineage":["https://openalex.org/I107920810"]},{"id":"https://openalex.org/I69552723","display_name":"University of Pretoria","ror":"https://ror.org/00g0p6g84","country_code":"ZA","type":"education","lineage":["https://openalex.org/I69552723"]}],"countries":["BR","ZA"],"is_corresponding":true,"raw_author_name":"L. C. J. Alcantara","raw_affiliation_strings":["Laborat\u00f3rio Avan\u00e7ado de Sa\u00fade Publica, Centro de Pesquisas Gon\u00e7alo Moniz, Funda\u00e7\u00e3o Oswaldo Cruz, Brazil","Laborat\u00f3rio Avan\u00e7ado de Sa\u00fade Publica, Centro de Pesquisas Gon\u00e7alo Moniz, Funda\u00e7\u00e3o Oswaldo Cruz, Brazil, 2MRC Unit for Inflammation and Immunity, Department of Immunology, University of Pretoria and Tshwane Academic Division of the National Health Laboratory Service, Pretoria, South Africa, 3Laboratory for Clinical and Epidemiological Virology, Katholieke Universiteit Leuven, BG, 4MyBioData bvba, Rotselaar, Belgium, 5Department of Zoology, University of Oxford, UK and 6Africa Centre for Health and Population Studies, University of KwaZulu-Natal, South Africa"],"affiliations":[{"raw_affiliation_string":"Laborat\u00f3rio Avan\u00e7ado de Sa\u00fade Publica, Centro de Pesquisas Gon\u00e7alo Moniz, Funda\u00e7\u00e3o Oswaldo Cruz, Brazil","institution_ids":[]},{"raw_affiliation_string":"Laborat\u00f3rio Avan\u00e7ado de Sa\u00fade Publica, Centro de Pesquisas Gon\u00e7alo Moniz, Funda\u00e7\u00e3o Oswaldo Cruz, Brazil, 2MRC Unit for Inflammation and Immunity, Department of Immunology, University of Pretoria and Tshwane Academic Division of the National Health Laboratory Service, Pretoria, South Africa, 3Laboratory for Clinical and Epidemiological Virology, Katholieke Universiteit Leuven, BG, 4MyBioData bvba, Rotselaar, Belgium, 5Department of Zoology, University of Oxford, UK and 6Africa Centre for Health and Population Studies, University of KwaZulu-Natal, South Africa","institution_ids":["https://openalex.org/I107920810","https://openalex.org/I95023434","https://openalex.org/I69552723","https://openalex.org/I52325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113762616","display_name":"S Cassol","orcid":null},"institutions":[{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]},{"id":"https://openalex.org/I69552723","display_name":"University of Pretoria","ror":"https://ror.org/00g0p6g84","country_code":"ZA","type":"education","lineage":["https://openalex.org/I69552723"]},{"id":"https://openalex.org/I107920810","display_name":"National Health Laboratory Service","ror":"https://ror.org/00znvbk37","country_code":"ZA","type":"government","lineage":["https://openalex.org/I107920810"]},{"id":"https://openalex.org/I95023434","display_name":"University of KwaZulu-Natal","ror":"https://ror.org/04qzfn040","country_code":"ZA","type":"education","lineage":["https://openalex.org/I95023434"]}],"countries":["BR","ZA"],"is_corresponding":false,"raw_author_name":"S. Cassol","raw_affiliation_strings":["Laborat\u00f3rio Avan\u00e7ado de Sa\u00fade Publica, Centro de Pesquisas Gon\u00e7alo Moniz, Funda\u00e7\u00e3o Oswaldo Cruz, Brazil, 2MRC Unit for Inflammation and Immunity, Department of Immunology, University of Pretoria and Tshwane Academic Division of the National Health Laboratory Service, Pretoria, South Africa, 3Laboratory for Clinical and Epidemiological Virology, Katholieke Universiteit Leuven, BG, 4MyBioData bvba, Rotselaar, Belgium, 5Department of Zoology, University of Oxford, UK and 6Africa Centre for Health and Population Studies, University of KwaZulu-Natal, South Africa"],"affiliations":[{"raw_affiliation_string":"Laborat\u00f3rio Avan\u00e7ado de Sa\u00fade Publica, Centro de Pesquisas Gon\u00e7alo Moniz, Funda\u00e7\u00e3o Oswaldo Cruz, Brazil, 2MRC Unit for Inflammation and Immunity, Department of Immunology, University of Pretoria and Tshwane Academic Division of the National Health Laboratory Service, Pretoria, South Africa, 3Laboratory for Clinical and Epidemiological Virology, Katholieke Universiteit Leuven, BG, 4MyBioData bvba, Rotselaar, Belgium, 5Department of Zoology, University of Oxford, UK and 6Africa Centre for Health and Population Studies, University of KwaZulu-Natal, South Africa","institution_ids":["https://openalex.org/I107920810","https://openalex.org/I95023434","https://openalex.org/I69552723","https://openalex.org/I52325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068276498","display_name":"Pieter Libin","orcid":"https://orcid.org/0000-0003-3906-758X"},"institutions":[{"id":"https://openalex.org/I69552723","display_name":"University of Pretoria","ror":"https://ror.org/00g0p6g84","country_code":"ZA","type":"education","lineage":["https://openalex.org/I69552723"]},{"id":"https://openalex.org/I107920810","display_name":"National Health Laboratory Service","ror":"https://ror.org/00znvbk37","country_code":"ZA","type":"government","lineage":["https://openalex.org/I107920810"]},{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]},{"id":"https://openalex.org/I95023434","display_name":"University of KwaZulu-Natal","ror":"https://ror.org/04qzfn040","country_code":"ZA","type":"education","lineage":["https://openalex.org/I95023434"]}],"countries":["BR","ZA"],"is_corresponding":false,"raw_author_name":"P. Libin","raw_affiliation_strings":["Laborat\u00f3rio Avan\u00e7ado de Sa\u00fade Publica, Centro de Pesquisas Gon\u00e7alo Moniz, Funda\u00e7\u00e3o Oswaldo Cruz, Brazil, 2MRC Unit for Inflammation and Immunity, Department of Immunology, University of Pretoria and Tshwane Academic Division of the National Health Laboratory Service, Pretoria, South Africa, 3Laboratory for Clinical and Epidemiological Virology, Katholieke Universiteit Leuven, BG, 4MyBioData bvba, Rotselaar, Belgium, 5Department of Zoology, University of Oxford, UK and 6Africa Centre for Health and Population Studies, University of KwaZulu-Natal, South Africa"],"affiliations":[{"raw_affiliation_string":"Laborat\u00f3rio Avan\u00e7ado de Sa\u00fade Publica, Centro de Pesquisas Gon\u00e7alo Moniz, Funda\u00e7\u00e3o Oswaldo Cruz, Brazil, 2MRC Unit for Inflammation and Immunity, Department of Immunology, University of Pretoria and Tshwane Academic Division of the National Health Laboratory Service, Pretoria, South Africa, 3Laboratory for Clinical and Epidemiological Virology, Katholieke Universiteit Leuven, BG, 4MyBioData bvba, Rotselaar, Belgium, 5Department of Zoology, University of Oxford, UK and 6Africa Centre for Health and Population Studies, University of KwaZulu-Natal, South Africa","institution_ids":["https://openalex.org/I107920810","https://openalex.org/I95023434","https://openalex.org/I69552723","https://openalex.org/I52325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081337249","display_name":"Koen Deforche","orcid":"https://orcid.org/0000-0003-3898-9494"},"institutions":[{"id":"https://openalex.org/I69552723","display_name":"University of Pretoria","ror":"https://ror.org/00g0p6g84","country_code":"ZA","type":"education","lineage":["https://openalex.org/I69552723"]},{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]},{"id":"https://openalex.org/I95023434","display_name":"University of KwaZulu-Natal","ror":"https://ror.org/04qzfn040","country_code":"ZA","type":"education","lineage":["https://openalex.org/I95023434"]},{"id":"https://openalex.org/I107920810","display_name":"National Health Laboratory Service","ror":"https://ror.org/00znvbk37","country_code":"ZA","type":"government","lineage":["https://openalex.org/I107920810"]}],"countries":["BR","ZA"],"is_corresponding":false,"raw_author_name":"K. Deforche","raw_affiliation_strings":["Laborat\u00f3rio Avan\u00e7ado de Sa\u00fade Publica, Centro de Pesquisas Gon\u00e7alo Moniz, Funda\u00e7\u00e3o Oswaldo Cruz, Brazil, 2MRC Unit for Inflammation and Immunity, Department of Immunology, University of Pretoria and Tshwane Academic Division of the National Health Laboratory Service, Pretoria, South Africa, 3Laboratory for Clinical and Epidemiological Virology, Katholieke Universiteit Leuven, BG, 4MyBioData bvba, Rotselaar, Belgium, 5Department of Zoology, University of Oxford, UK and 6Africa Centre for Health and Population Studies, University of KwaZulu-Natal, South Africa"],"affiliations":[{"raw_affiliation_string":"Laborat\u00f3rio Avan\u00e7ado de Sa\u00fade Publica, Centro de Pesquisas Gon\u00e7alo Moniz, Funda\u00e7\u00e3o Oswaldo Cruz, Brazil, 2MRC Unit for Inflammation and Immunity, Department of Immunology, University of Pretoria and Tshwane Academic Division of the National Health Laboratory Service, Pretoria, South Africa, 3Laboratory for Clinical and Epidemiological Virology, Katholieke Universiteit Leuven, BG, 4MyBioData bvba, Rotselaar, Belgium, 5Department of Zoology, University of Oxford, UK and 6Africa Centre for Health and Population Studies, University of KwaZulu-Natal, South Africa","institution_ids":["https://openalex.org/I107920810","https://openalex.org/I95023434","https://openalex.org/I69552723","https://openalex.org/I52325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061658598","display_name":"Oliver G. Pybus","orcid":"https://orcid.org/0000-0002-8797-2667"},"institutions":[{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]},{"id":"https://openalex.org/I69552723","display_name":"University of Pretoria","ror":"https://ror.org/00g0p6g84","country_code":"ZA","type":"education","lineage":["https://openalex.org/I69552723"]},{"id":"https://openalex.org/I95023434","display_name":"University of KwaZulu-Natal","ror":"https://ror.org/04qzfn040","country_code":"ZA","type":"education","lineage":["https://openalex.org/I95023434"]},{"id":"https://openalex.org/I107920810","display_name":"National Health Laboratory Service","ror":"https://ror.org/00znvbk37","country_code":"ZA","type":"government","lineage":["https://openalex.org/I107920810"]}],"countries":["BR","ZA"],"is_corresponding":false,"raw_author_name":"O. G. Pybus","raw_affiliation_strings":["Laborat\u00f3rio Avan\u00e7ado de Sa\u00fade Publica, Centro de Pesquisas Gon\u00e7alo Moniz, Funda\u00e7\u00e3o Oswaldo Cruz, Brazil, 2MRC Unit for Inflammation and Immunity, Department of Immunology, University of Pretoria and Tshwane Academic Division of the National Health Laboratory Service, Pretoria, South Africa, 3Laboratory for Clinical and Epidemiological Virology, Katholieke Universiteit Leuven, BG, 4MyBioData bvba, Rotselaar, Belgium, 5Department of Zoology, University of Oxford, UK and 6Africa Centre for Health and Population Studies, University of KwaZulu-Natal, South Africa"],"affiliations":[{"raw_affiliation_string":"Laborat\u00f3rio Avan\u00e7ado de Sa\u00fade Publica, Centro de Pesquisas Gon\u00e7alo Moniz, Funda\u00e7\u00e3o Oswaldo Cruz, Brazil, 2MRC Unit for Inflammation and Immunity, Department of Immunology, University of Pretoria and Tshwane Academic Division of the National Health Laboratory Service, Pretoria, South Africa, 3Laboratory for Clinical and Epidemiological Virology, Katholieke Universiteit Leuven, BG, 4MyBioData bvba, Rotselaar, Belgium, 5Department of Zoology, University of Oxford, UK and 6Africa Centre for Health and Population Studies, University of KwaZulu-Natal, South Africa","institution_ids":["https://openalex.org/I107920810","https://openalex.org/I95023434","https://openalex.org/I69552723","https://openalex.org/I52325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044984230","display_name":"Marc Van Ranst","orcid":"https://orcid.org/0000-0002-1674-4157"},"institutions":[{"id":"https://openalex.org/I69552723","display_name":"University of Pretoria","ror":"https://ror.org/00g0p6g84","country_code":"ZA","type":"education","lineage":["https://openalex.org/I69552723"]},{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]},{"id":"https://openalex.org/I95023434","display_name":"University of KwaZulu-Natal","ror":"https://ror.org/04qzfn040","country_code":"ZA","type":"education","lineage":["https://openalex.org/I95023434"]},{"id":"https://openalex.org/I107920810","display_name":"National Health Laboratory Service","ror":"https://ror.org/00znvbk37","country_code":"ZA","type":"government","lineage":["https://openalex.org/I107920810"]}],"countries":["BR","ZA"],"is_corresponding":false,"raw_author_name":"M. Van Ranst","raw_affiliation_strings":["Laborat\u00f3rio Avan\u00e7ado de Sa\u00fade Publica, Centro de Pesquisas Gon\u00e7alo Moniz, Funda\u00e7\u00e3o Oswaldo Cruz, Brazil, 2MRC Unit for Inflammation and Immunity, Department of Immunology, University of Pretoria and Tshwane Academic Division of the National Health Laboratory Service, Pretoria, South Africa, 3Laboratory for Clinical and Epidemiological Virology, Katholieke Universiteit Leuven, BG, 4MyBioData bvba, Rotselaar, Belgium, 5Department of Zoology, University of Oxford, UK and 6Africa Centre for Health and Population Studies, University of KwaZulu-Natal, South Africa"],"affiliations":[{"raw_affiliation_string":"Laborat\u00f3rio Avan\u00e7ado de Sa\u00fade Publica, Centro de Pesquisas Gon\u00e7alo Moniz, Funda\u00e7\u00e3o Oswaldo Cruz, Brazil, 2MRC Unit for Inflammation and Immunity, Department of Immunology, University of Pretoria and Tshwane Academic Division of the National Health Laboratory Service, Pretoria, South Africa, 3Laboratory for Clinical and Epidemiological Virology, Katholieke Universiteit Leuven, BG, 4MyBioData bvba, Rotselaar, Belgium, 5Department of Zoology, University of Oxford, UK and 6Africa Centre for Health and Population Studies, University of KwaZulu-Natal, South Africa","institution_ids":["https://openalex.org/I107920810","https://openalex.org/I95023434","https://openalex.org/I69552723","https://openalex.org/I52325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067555072","display_name":"Bernardo Galv\u00e3o\u2010Castro","orcid":"https://orcid.org/0000-0002-0644-6471"},"institutions":[{"id":"https://openalex.org/I95023434","display_name":"University of KwaZulu-Natal","ror":"https://ror.org/04qzfn040","country_code":"ZA","type":"education","lineage":["https://openalex.org/I95023434"]},{"id":"https://openalex.org/I107920810","display_name":"National Health Laboratory Service","ror":"https://ror.org/00znvbk37","country_code":"ZA","type":"government","lineage":["https://openalex.org/I107920810"]},{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]},{"id":"https://openalex.org/I69552723","display_name":"University of Pretoria","ror":"https://ror.org/00g0p6g84","country_code":"ZA","type":"education","lineage":["https://openalex.org/I69552723"]}],"countries":["BR","ZA"],"is_corresponding":false,"raw_author_name":"B. Galvao-Castro","raw_affiliation_strings":["Laborat\u00f3rio Avan\u00e7ado de Sa\u00fade Publica, Centro de Pesquisas Gon\u00e7alo Moniz, Funda\u00e7\u00e3o Oswaldo Cruz, Brazil, 2MRC Unit for Inflammation and Immunity, Department of Immunology, University of Pretoria and Tshwane Academic Division of the National Health Laboratory Service, Pretoria, South Africa, 3Laboratory for Clinical and Epidemiological Virology, Katholieke Universiteit Leuven, BG, 4MyBioData bvba, Rotselaar, Belgium, 5Department of Zoology, University of Oxford, UK and 6Africa Centre for Health and Population Studies, University of KwaZulu-Natal, South Africa"],"affiliations":[{"raw_affiliation_string":"Laborat\u00f3rio Avan\u00e7ado de Sa\u00fade Publica, Centro de Pesquisas Gon\u00e7alo Moniz, Funda\u00e7\u00e3o Oswaldo Cruz, Brazil, 2MRC Unit for Inflammation and Immunity, Department of Immunology, University of Pretoria and Tshwane Academic Division of the National Health Laboratory Service, Pretoria, South Africa, 3Laboratory for Clinical and Epidemiological Virology, Katholieke Universiteit Leuven, BG, 4MyBioData bvba, Rotselaar, Belgium, 5Department of Zoology, University of Oxford, UK and 6Africa Centre for Health and Population Studies, University of KwaZulu-Natal, South Africa","institution_ids":["https://openalex.org/I107920810","https://openalex.org/I95023434","https://openalex.org/I69552723","https://openalex.org/I52325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065034994","display_name":"Anne\u2013Mieke Vandamme","orcid":"https://orcid.org/0000-0002-6594-2766"},"institutions":[{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]},{"id":"https://openalex.org/I107920810","display_name":"National Health Laboratory Service","ror":"https://ror.org/00znvbk37","country_code":"ZA","type":"government","lineage":["https://openalex.org/I107920810"]},{"id":"https://openalex.org/I95023434","display_name":"University of KwaZulu-Natal","ror":"https://ror.org/04qzfn040","country_code":"ZA","type":"education","lineage":["https://openalex.org/I95023434"]},{"id":"https://openalex.org/I69552723","display_name":"University of Pretoria","ror":"https://ror.org/00g0p6g84","country_code":"ZA","type":"education","lineage":["https://openalex.org/I69552723"]}],"countries":["BR","ZA"],"is_corresponding":false,"raw_author_name":"A.-M. Vandamme","raw_affiliation_strings":["Laborat\u00f3rio Avan\u00e7ado de Sa\u00fade Publica, Centro de Pesquisas Gon\u00e7alo Moniz, Funda\u00e7\u00e3o Oswaldo Cruz, Brazil, 2MRC Unit for Inflammation and Immunity, Department of Immunology, University of Pretoria and Tshwane Academic Division of the National Health Laboratory Service, Pretoria, South Africa, 3Laboratory for Clinical and Epidemiological Virology, Katholieke Universiteit Leuven, BG, 4MyBioData bvba, Rotselaar, Belgium, 5Department of Zoology, University of Oxford, UK and 6Africa Centre for Health and Population Studies, University of KwaZulu-Natal, South Africa"],"affiliations":[{"raw_affiliation_string":"Laborat\u00f3rio Avan\u00e7ado de Sa\u00fade Publica, Centro de Pesquisas Gon\u00e7alo Moniz, Funda\u00e7\u00e3o Oswaldo Cruz, Brazil, 2MRC Unit for Inflammation and Immunity, Department of Immunology, University of Pretoria and Tshwane Academic Division of the National Health Laboratory Service, Pretoria, South Africa, 3Laboratory for Clinical and Epidemiological Virology, Katholieke Universiteit Leuven, BG, 4MyBioData bvba, Rotselaar, Belgium, 5Department of Zoology, University of Oxford, UK and 6Africa Centre for Health and Population Studies, University of KwaZulu-Natal, South Africa","institution_ids":["https://openalex.org/I107920810","https://openalex.org/I95023434","https://openalex.org/I69552723","https://openalex.org/I52325"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051373841","display_name":"T\u00falio de Oliveira","orcid":"https://orcid.org/0000-0002-3027-5254"},"institutions":[{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]},{"id":"https://openalex.org/I95023434","display_name":"University of KwaZulu-Natal","ror":"https://ror.org/04qzfn040","country_code":"ZA","type":"education","lineage":["https://openalex.org/I95023434"]},{"id":"https://openalex.org/I107920810","display_name":"National Health Laboratory Service","ror":"https://ror.org/00znvbk37","country_code":"ZA","type":"government","lineage":["https://openalex.org/I107920810"]},{"id":"https://openalex.org/I69552723","display_name":"University of Pretoria","ror":"https://ror.org/00g0p6g84","country_code":"ZA","type":"education","lineage":["https://openalex.org/I69552723"]}],"countries":["BR","ZA"],"is_corresponding":false,"raw_author_name":"T. de Oliveira","raw_affiliation_strings":["Laborat\u00f3rio Avan\u00e7ado de Sa\u00fade Publica, Centro de Pesquisas Gon\u00e7alo Moniz, Funda\u00e7\u00e3o Oswaldo Cruz, Brazil, 2MRC Unit for Inflammation and Immunity, Department of Immunology, University of Pretoria and Tshwane Academic Division of the National Health Laboratory Service, Pretoria, South Africa, 3Laboratory for Clinical and Epidemiological Virology, Katholieke Universiteit Leuven, BG, 4MyBioData bvba, Rotselaar, Belgium, 5Department of Zoology, University of Oxford, UK and 6Africa Centre for Health and Population Studies, University of KwaZulu-Natal, South Africa"],"affiliations":[{"raw_affiliation_string":"Laborat\u00f3rio Avan\u00e7ado de Sa\u00fade Publica, Centro de Pesquisas Gon\u00e7alo Moniz, Funda\u00e7\u00e3o Oswaldo Cruz, Brazil, 2MRC Unit for Inflammation and Immunity, Department of Immunology, University of Pretoria and Tshwane Academic Division of the National Health Laboratory Service, Pretoria, South Africa, 3Laboratory for Clinical and Epidemiological Virology, Katholieke Universiteit Leuven, BG, 4MyBioData bvba, Rotselaar, Belgium, 5Department of Zoology, University of Oxford, UK and 6Africa Centre for Health and Population Studies, University of KwaZulu-Natal, South Africa","institution_ids":["https://openalex.org/I107920810","https://openalex.org/I95023434","https://openalex.org/I69552723","https://openalex.org/I52325"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5071835363"],"corresponding_institution_ids":["https://openalex.org/I107920810","https://openalex.org/I52325","https://openalex.org/I69552723","https://openalex.org/I95023434"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.5023,"has_fulltext":false,"cited_by_count":197,"citation_normalized_percentile":{"value":0.8972483,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"37","issue":"Web Server","first_page":"W634","last_page":"W642"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12159","display_name":"T-cell and Retrovirus Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12159","display_name":"T-cell and Retrovirus Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11560","display_name":"Animal Disease Management and Epidemiology","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1102","display_name":"Agronomy and Crop Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8286997079849243},{"id":"https://openalex.org/keywords/genotyping","display_name":"Genotyping","score":0.8278106451034546},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.7482771873474121},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.6607453227043152},{"id":"https://openalex.org/keywords/recombinant-dna","display_name":"Recombinant DNA","score":0.5522772669792175},{"id":"https://openalex.org/keywords/recombinant-virus","display_name":"Recombinant virus","score":0.47467970848083496},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.4507822096347809},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4310249090194702},{"id":"https://openalex.org/keywords/sequence-analysis","display_name":"Sequence analysis","score":0.4138393998146057},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.38134825229644775},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13776224851608276}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8286997079849243},{"id":"https://openalex.org/C31467283","wikidata":"https://www.wikidata.org/wiki/Q912147","display_name":"Genotyping","level":4,"score":0.8278106451034546},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.7482771873474121},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.6607453227043152},{"id":"https://openalex.org/C40767141","wikidata":"https://www.wikidata.org/wiki/Q285697","display_name":"Recombinant DNA","level":3,"score":0.5522772669792175},{"id":"https://openalex.org/C39060996","wikidata":"https://www.wikidata.org/wiki/Q7302706","display_name":"Recombinant virus","level":4,"score":0.47467970848083496},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.4507822096347809},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4310249090194702},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.4138393998146057},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.38134825229644775},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13776224851608276}],"mesh":[{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006515","descriptor_name":"Hepatitis B virus","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D006515","descriptor_name":"Hepatitis B virus","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D006515","descriptor_name":"Hepatitis B virus","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D006515","descriptor_name":"Hepatitis B virus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006515","descriptor_name":"Hepatitis B virus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006515","descriptor_name":"Hepatitis B virus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012015","descriptor_name":"Reference Standards","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012015","descriptor_name":"Reference Standards","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012015","descriptor_name":"Reference Standards","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016174","descriptor_name":"Hepacivirus","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D016174","descriptor_name":"Hepacivirus","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D016174","descriptor_name":"Hepacivirus","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D016174","descriptor_name":"Hepacivirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016174","descriptor_name":"Hepacivirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016174","descriptor_name":"Hepacivirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false}],"locations_count":9,"locations":[{"id":"doi:10.1093/nar/gkp455","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp455","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W634/3967291/gkp455.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:19483099","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19483099","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:americanae.aecid.es:2296138","is_oa":true,"landing_page_url":"https://www.arca.fiocruz.br/handle/icict/1900","pdf_url":null,"source":{"id":"https://openalex.org/S4306400786","display_name":"Americanae (AECID Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"reponame:Reposit\u00f3rio Institucional da FIOCRUZ (ARCA)","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:arca.fiocruz.br:icict/1900","is_oa":true,"landing_page_url":"https://arca.fiocruz.br/handle/icict/1900","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"instacron:FIOCRUZ","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:ora.ox.ac.uk:uuid:93fe9783-5a81-4f92-9be7-2b4913e89311","is_oa":false,"landing_page_url":"https://ora.ox.ac.uk/objects/uuid:93fe9783-5a81-4f92-9be7-2b4913e89311","pdf_url":null,"source":{"id":"https://openalex.org/S4306402636","display_name":"Oxford University Research Archive (ORA) (University of Oxford)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I40120149","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/I40120149"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PubMed (http://www.ncbi.nlm.nih.gov/pubmed/)","raw_type":"Journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2703899","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2703899","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:repository.up.ac.za:2263/13354","is_oa":true,"landing_page_url":"http://hdl.handle.net/2263/13354","pdf_url":null,"source":{"id":"https://openalex.org/S4306401870","display_name":"UpSpace Institutional Repository (University of Pretoria)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I69552723","host_organization_name":"University of Pretoria","host_organization_lineage":["https://openalex.org/I69552723"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:vubissmart:VUBISSMART:2000:169565","is_oa":false,"landing_page_url":"https://biblio.vub.ac.be/vubir/a-standardized-framework-for-accurate-highthroughput-genotyping-of-recombinant-and-nonrecombinant-viral-sequences(80c6896a-3053-4e7d-b9c3-b231e20a7eaa).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306402573","display_name":"VUBIR (Vrije Universiteit Brussel)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I13469542","host_organization_name":"Vrije Universiteit Brussel","host_organization_lineage":["https://openalex.org/I13469542"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:vubissmart:VUBISSMART:2000:197234","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402573","display_name":"VUBIR (Vrije Universiteit Brussel)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I13469542","host_organization_name":"Vrije Universiteit Brussel","host_organization_lineage":["https://openalex.org/I13469542"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkp455","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp455","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W634/3967291/gkp455.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.8199999928474426,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2157702265.pdf","grobid_xml":"https://content.openalex.org/works/W2157702265.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W1485063346","https://openalex.org/W1998470335","https://openalex.org/W1999760126","https://openalex.org/W2004506270","https://openalex.org/W2077103006","https://openalex.org/W2081539383","https://openalex.org/W2082759128","https://openalex.org/W2083436647","https://openalex.org/W2101133789","https://openalex.org/W2103546861","https://openalex.org/W2108732706","https://openalex.org/W2112011866","https://openalex.org/W2113708808","https://openalex.org/W2123404862","https://openalex.org/W2126477090","https://openalex.org/W2128260028","https://openalex.org/W2132641863","https://openalex.org/W2139383620","https://openalex.org/W2140689424","https://openalex.org/W2143334889","https://openalex.org/W2144413761","https://openalex.org/W2146058063","https://openalex.org/W2157155233","https://openalex.org/W2157981512","https://openalex.org/W2158666214","https://openalex.org/W2161090508","https://openalex.org/W2165863813","https://openalex.org/W2166632132"],"related_works":["https://openalex.org/W1525149201","https://openalex.org/W2149271684","https://openalex.org/W3131108387","https://openalex.org/W2041161883","https://openalex.org/W2087388313","https://openalex.org/W2425794519","https://openalex.org/W2507134342","https://openalex.org/W3030883757","https://openalex.org/W2097629357","https://openalex.org/W2106255998"],"abstract_inverted_index":{"Human":[0],"immunodeficiency":[1],"virus":[2,49,54],"type-1":[3,50],"(HIV-1),":[4],"hepatitis":[5],"B":[6],"and":[7,9,26,31,42,57,110,121,131,146,149,171,176,178,192,202],"C":[8],"other":[10,43,193],"rapidly":[11],"evolving":[12],"viruses":[13,148],"are":[14,129,150,197,203],"characterized":[15],"by":[16,86],"extremely":[17],"high":[18],"levels":[19],"of":[20,29,39,72,81,89,93,102,112,144,188,209],"genetic":[21],"diversity.":[22],"To":[23],"facilitate":[24],"diagnosis":[25],"the":[27,37,70,94,103,108,113,117,168],"development":[28],"prevention":[30],"treatment":[32],"strategies":[33],"that":[34],"efficiently":[35],"target":[36],"diversity":[38],"these":[40,191],"viruses,":[41],"pathogens":[44],"such":[45],"as":[46],"human":[47,52,58],"T-lymphotropic":[48],"(HTLV-1),":[51],"herpes":[53],"type-8":[55],"(HHV8)":[56],"papillomavirus":[59],"(HPV),":[60],"we":[61],"developed":[62],"a":[63,73,77,97,185,198,207],"rapid":[64],"high-throughput-genotyping":[65],"system.":[66],"The":[67,137,195],"method":[68],"involves":[69],"alignment":[71,95],"query":[74,104],"sequence":[75,105],"with":[76,116],"carefully":[78],"selected":[79],"set":[80],"pre-defined":[82],"reference":[83,114],"strains,":[84],"followed":[85],"phylogenetic":[87],"analysis":[88],"multiple":[90],"overlapping":[91],"segments":[92],"using":[96,134],"sliding":[98],"window.":[99],"Each":[100],"segment":[101],"is":[106],"assigned":[107],"genotype":[109,184],"sub-genotype":[111],"strain":[115],"highest":[118],"bootstrap":[119],"(>70%)":[120],"bootscanning":[122],"(>90%)":[123],"scores.":[124],"Results":[125],"from":[126],"all":[127],"windows":[128],"combined":[130],"displayed":[132],"graphically":[133],"color-coded":[135],"genotypes.":[136],"new":[138],"Virus-Genotyping":[139],"Tools":[140],"provide":[141],"accurate":[142],"classification":[143],"recombinant":[145],"non-recombinant":[147],"currently":[151],"being":[152],"assessed":[153],"for":[154],"their":[155],"diagnostic":[156],"utility.":[157],"They":[158],"have":[159,179],"incorporated":[160],"into":[161],"several":[162],"HIV":[163],"drug":[164],"resistance":[165],"algorithms":[166],"including":[167],"Stanford":[169],"(http://hivdb.stanford.edu)":[170],"two":[172],"European":[173],"databases":[174],"(http://www.umcutrecht.nl/subsite/spread-programme/":[175],"http://www.hivrdb.org.uk/)":[177],"been":[180],"successfully":[181],"used":[182],"to":[183],"large":[186],"number":[187,208],"sequences":[189],"in":[190],"databases.":[194],"tools":[196],"PHP/JAVA":[199],"web":[200],"application":[201],"freely":[204],"accessible":[205],"on":[206],"servers":[210],"including:":[211],"http://bioafrica.mrc.ac.za/rega-genotype/html/,":[212],"http://lasp.cpqgm.fiocruz.br/virus-genotype/html/,":[213],"http://jose.med.kuleuven.be/genotypetool/html/.":[214]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":16},{"year":2018,"cited_by_count":11},{"year":2017,"cited_by_count":18},{"year":2016,"cited_by_count":20},{"year":2015,"cited_by_count":58},{"year":2014,"cited_by_count":18},{"year":2013,"cited_by_count":12},{"year":2012,"cited_by_count":11}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}