{"id":"https://openalex.org/W2131660156","doi":"https://doi.org/10.1093/nar/gkp440","title":"BioPortal: ontologies and integrated data resources at the click of a mouse","display_name":"BioPortal: ontologies and integrated data resources at the click of a mouse","publication_year":2009,"publication_date":"2009-05-29","ids":{"openalex":"https://openalex.org/W2131660156","doi":"https://doi.org/10.1093/nar/gkp440","mag":"2131660156","pmid":"https://pubmed.ncbi.nlm.nih.gov/19483092"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkp440","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp440","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W170/3966326/gkp440.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W170/3966326/gkp440.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041421536","display_name":"Natasha Noy","orcid":"https://orcid.org/0000-0002-7437-0624"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"N. F. Noy","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041175834","display_name":"Nigam H. Shah","orcid":"https://orcid.org/0000-0001-9385-7158"},"institutions":[{"id":"https://openalex.org/I212119943","display_name":"University of Victoria","ror":"https://ror.org/04s5mat29","country_code":"CA","type":"education","lineage":["https://openalex.org/I212119943"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"N. H. Shah","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, 2Department of Computer Science, University of Victoria, Victoria, Canada and 3Department of Biomedical Informatics, Mayo Clinic, Rochester, MN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, 2Department of Computer Science, University of Victoria, Victoria, Canada and 3Department of Biomedical Informatics, Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I212119943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051806625","display_name":"Patricia L. Whetzel","orcid":"https://orcid.org/0000-0002-3458-4839"},"institutions":[{"id":"https://openalex.org/I212119943","display_name":"University of Victoria","ror":"https://ror.org/04s5mat29","country_code":"CA","type":"education","lineage":["https://openalex.org/I212119943"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"P. L. Whetzel","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, 2Department of Computer Science, University of Victoria, Victoria, Canada and 3Department of Biomedical Informatics, Mayo Clinic, Rochester, MN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, 2Department of Computer Science, University of Victoria, Victoria, Canada and 3Department of Biomedical Informatics, Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I212119943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081863278","display_name":"Bing Tian Dai","orcid":"https://orcid.org/0000-0002-7245-7021"},"institutions":[{"id":"https://openalex.org/I212119943","display_name":"University of Victoria","ror":"https://ror.org/04s5mat29","country_code":"CA","type":"education","lineage":["https://openalex.org/I212119943"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"B. Dai","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, 2Department of Computer Science, University of Victoria, Victoria, Canada and 3Department of Biomedical Informatics, Mayo Clinic, Rochester, MN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, 2Department of Computer Science, University of Victoria, Victoria, Canada and 3Department of Biomedical Informatics, Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I212119943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063944083","display_name":"Michael C. Dorf","orcid":"https://orcid.org/0009-0005-2374-6344"},"institutions":[{"id":"https://openalex.org/I212119943","display_name":"University of Victoria","ror":"https://ror.org/04s5mat29","country_code":"CA","type":"education","lineage":["https://openalex.org/I212119943"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"M. Dorf","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, 2Department of Computer Science, University of Victoria, Victoria, Canada and 3Department of Biomedical Informatics, Mayo Clinic, Rochester, MN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, 2Department of Computer Science, University of Victoria, Victoria, Canada and 3Department of Biomedical Informatics, Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I212119943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021788942","display_name":"Niall Griffith","orcid":null},"institutions":[{"id":"https://openalex.org/I212119943","display_name":"University of Victoria","ror":"https://ror.org/04s5mat29","country_code":"CA","type":"education","lineage":["https://openalex.org/I212119943"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"N. Griffith","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, 2Department of Computer Science, University of Victoria, Victoria, Canada and 3Department of Biomedical Informatics, Mayo Clinic, Rochester, MN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, 2Department of Computer Science, University of Victoria, Victoria, Canada and 3Department of Biomedical Informatics, Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I212119943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064022148","display_name":"Cl\u00e9ment Jonquet","orcid":"https://orcid.org/0000-0002-2404-1582"},"institutions":[{"id":"https://openalex.org/I212119943","display_name":"University of Victoria","ror":"https://ror.org/04s5mat29","country_code":"CA","type":"education","lineage":["https://openalex.org/I212119943"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"C. Jonquet","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, 2Department of Computer Science, University of Victoria, Victoria, Canada and 3Department of Biomedical Informatics, Mayo Clinic, Rochester, MN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, 2Department of Computer Science, University of Victoria, Victoria, Canada and 3Department of Biomedical Informatics, Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I212119943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004965117","display_name":"Daniel L. Rubin","orcid":"https://orcid.org/0000-0001-5057-4369"},"institutions":[{"id":"https://openalex.org/I212119943","display_name":"University of Victoria","ror":"https://ror.org/04s5mat29","country_code":"CA","type":"education","lineage":["https://openalex.org/I212119943"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"D. L. Rubin","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, 2Department of Computer Science, University of Victoria, Victoria, Canada and 3Department of Biomedical Informatics, Mayo Clinic, Rochester, MN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, 2Department of Computer Science, University of Victoria, Victoria, Canada and 3Department of Biomedical Informatics, Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I212119943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038905934","display_name":"Margaret\u2010Anne Storey","orcid":"https://orcid.org/0000-0003-2278-2536"},"institutions":[{"id":"https://openalex.org/I212119943","display_name":"University of Victoria","ror":"https://ror.org/04s5mat29","country_code":"CA","type":"education","lineage":["https://openalex.org/I212119943"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"M.-A. Storey","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, 2Department of Computer Science, University of Victoria, Victoria, Canada and 3Department of Biomedical Informatics, Mayo Clinic, Rochester, MN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, 2Department of Computer Science, University of Victoria, Victoria, Canada and 3Department of Biomedical Informatics, Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I212119943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060390916","display_name":"Christopher G. Chute","orcid":"https://orcid.org/0000-0001-5437-2545"},"institutions":[{"id":"https://openalex.org/I212119943","display_name":"University of Victoria","ror":"https://ror.org/04s5mat29","country_code":"CA","type":"education","lineage":["https://openalex.org/I212119943"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"C. G. Chute","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, 2Department of Computer Science, University of Victoria, Victoria, Canada and 3Department of Biomedical Informatics, Mayo Clinic, Rochester, MN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, 2Department of Computer Science, University of Victoria, Victoria, Canada and 3Department of Biomedical Informatics, Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I212119943"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009128820","display_name":"Mark A. Musen","orcid":"https://orcid.org/0000-0003-3325-793X"},"institutions":[{"id":"https://openalex.org/I212119943","display_name":"University of Victoria","ror":"https://ror.org/04s5mat29","country_code":"CA","type":"education","lineage":["https://openalex.org/I212119943"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"M. A. Musen","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, 2Department of Computer Science, University of Victoria, Victoria, Canada and 3Department of Biomedical Informatics, Mayo Clinic, Rochester, MN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, 2Department of Computer Science, University of Victoria, Victoria, Canada and 3Department of Biomedical Informatics, Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I212119943"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5041421536"],"corresponding_institution_ids":["https://openalex.org/I97018004"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":27.246,"has_fulltext":false,"cited_by_count":882,"citation_normalized_percentile":{"value":0.9980628,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"37","issue":"Web Server","first_page":"W170","last_page":"W173"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9746999740600586,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9487000107765198,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9263730049133301},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4523143172264099},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3391273021697998},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.32749563455581665}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9263730049133301},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4523143172264099},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3391273021697998},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.32749563455581665}],"mesh":[{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1093/nar/gkp440","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp440","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W170/3966326/gkp440.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:19483092","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19483092","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.358.8761","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.358.8761","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/39/2b/Nucleic_Acids_Res_2009_Jul_1_37(Web_Server_issue)_W170-W173.tar.gz","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.596.4866","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.596.4866","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/37/suppl_2/W170.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.964.5070","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.964.5070","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2009/05/29/nar.gkp440.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.969.3822","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.969.3822","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2009/05/29/nar.gkp440.full.pdf","raw_type":"text"},{"id":"pmh:oai:HAL:hal-00492020v2","is_oa":true,"landing_page_url":"https://hal.science/hal-00492020","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 2009, 37, pp.170-173. &#x27E8;10.1093/nar/gkp440&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:pubmedcentral.nih.gov:2703982","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2703982","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkp440","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp440","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W170/3966326/gkp440.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2131660156.pdf","grobid_xml":"https://content.openalex.org/works/W2131660156.grobid-xml"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W102787101","https://openalex.org/W1871852719","https://openalex.org/W1998671175","https://openalex.org/W2057240659","https://openalex.org/W2113142309","https://openalex.org/W2134015035"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W1971568933"],"abstract_inverted_index":{"Biomedical":[0],"ontologies":[1,27,38,132],"provide":[2],"essential":[3],"domain":[4,95],"knowledge":[5],"to":[6,37,53,77,80,146,155],"drive":[7],"data":[8,12,111,157],"integration,":[9],"information":[10],"retrieval,":[11],"annotation,":[13],"natural-language":[14],"processing":[15],"and":[16,34,45,56,69,86,100,102,121,126,142],"decision":[17],"support.":[18,103],"BioPortal":[19,48,104,136],"(http://bioportal.bioontology.org)":[20],"is":[21],"an":[22],"open":[23],"repository":[24],"of":[25,71,98,109,128,161],"biomedical":[26,110,149,162],"that":[28],"provides":[29,139,153],"access":[30,148],"via":[31],"Web":[32,35,60],"services":[33],"browsers":[36],"developed":[39],"in":[40,66,133],"OWL,":[41],"RDF,":[42],"OBO":[43],"format":[44],"Prot\u00e9g\u00e9":[46],"frames.":[47],"functionality":[49],"includes":[50],"the":[51,67,115,124],"ability":[52],"browse,":[54],"search":[55,108],"visualize":[57],"ontologies.":[58],"The":[59],"interface":[61],"also":[62,105,152],"facilitates":[63],"community-based":[64],"participation":[65],"evaluation":[68],"evolution":[70],"ontology":[72,81,87],"content":[73],"by":[74],"providing":[75],"features":[76],"add":[78],"notes":[79],"terms,":[82],"mappings":[83],"between":[84],"terms":[85],"reviews":[88],"based":[89],"on":[90],"criteria":[91],"such":[92,113],"as":[93,114],"usability,":[94],"coverage,":[96],"quality":[97],"content,":[99],"documentation":[101],"enables":[106],"integrated":[107],"resources":[112,130],"Gene":[116],"Expression":[117],"Omnibus":[118],"(GEO),":[119],"ClinicalTrials.gov,":[120],"ArrayExpress,":[122],"through":[123],"annotation":[125],"indexing":[127],"these":[129],"with":[131],"BioPortal.":[134],"Thus,":[135],"not":[137],"only":[138],"investigators,":[140],"clinicians,":[141],"developers":[143],"'one-stop":[144],"shopping'":[145],"programmatically":[147],"ontologies,":[150],"but":[151],"support":[154],"integrate":[156],"from":[158],"a":[159],"variety":[160],"resources.":[163]},"counts_by_year":[{"year":2026,"cited_by_count":10},{"year":2025,"cited_by_count":22},{"year":2024,"cited_by_count":30},{"year":2023,"cited_by_count":42},{"year":2022,"cited_by_count":43},{"year":2021,"cited_by_count":32},{"year":2020,"cited_by_count":44},{"year":2019,"cited_by_count":52},{"year":2018,"cited_by_count":51},{"year":2017,"cited_by_count":71},{"year":2016,"cited_by_count":71},{"year":2015,"cited_by_count":55},{"year":2014,"cited_by_count":87},{"year":2013,"cited_by_count":73},{"year":2012,"cited_by_count":82}],"updated_date":"2026-05-08T15:41:06.802602","created_date":"2025-10-10T00:00:00"}
