{"id":"https://openalex.org/W2125866257","doi":"https://doi.org/10.1093/nar/gkp417","title":"SEPPA: a computational server for spatial epitope prediction of protein antigens","display_name":"SEPPA: a computational server for spatial epitope prediction of protein antigens","publication_year":2009,"publication_date":"2009-05-22","ids":{"openalex":"https://openalex.org/W2125866257","doi":"https://doi.org/10.1093/nar/gkp417","mag":"2125866257","pmid":"https://pubmed.ncbi.nlm.nih.gov/19465377"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkp417","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp417","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W612/16759001/gkp417.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W612/16759001/gkp417.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101478419","display_name":"Jing Sun","orcid":"https://orcid.org/0000-0001-7104-8026"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jing Sun","raw_affiliation_strings":["Department of Biomedical Engineering, School of Life Sciences and Technology, Tongji University, Shanghai 200092, China","Department of Biomedical Engineering, School of Life Sciences and Technology, Tongji University, Shanghai 200092, 2Shanghai Center for Bioinformation Technology, 100 Qinzhou Road, Shanghai 200235 and 3Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, School of Life Sciences and Technology, Tongji University, Shanghai 200092, China","institution_ids":[]},{"raw_affiliation_string":"Department of Biomedical Engineering, School of Life Sciences and Technology, Tongji University, Shanghai 200092, 2Shanghai Center for Bioinformation Technology, 100 Qinzhou Road, Shanghai 200235 and 3Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China","institution_ids":["https://openalex.org/I4210162648","https://openalex.org/I116953780","https://openalex.org/I4210106477"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008227987","display_name":"Di Wu","orcid":"https://orcid.org/0000-0002-4592-0308"},"institutions":[{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]},{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Di Wu","raw_affiliation_strings":["Department of Biomedical Engineering, School of Life Sciences and Technology, Tongji University, Shanghai 200092, 2Shanghai Center for Bioinformation Technology, 100 Qinzhou Road, Shanghai 200235 and 3Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, School of Life Sciences and Technology, Tongji University, Shanghai 200092, 2Shanghai Center for Bioinformation Technology, 100 Qinzhou Road, Shanghai 200235 and 3Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China","institution_ids":["https://openalex.org/I4210162648","https://openalex.org/I116953780","https://openalex.org/I4210106477"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003423650","display_name":"Tianlei Xu","orcid":"https://orcid.org/0000-0001-9382-6917"},"institutions":[{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]},{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]},{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tianlei Xu","raw_affiliation_strings":["Department of Biomedical Engineering, School of Life Sciences and Technology, Tongji University, Shanghai 200092, 2Shanghai Center for Bioinformation Technology, 100 Qinzhou Road, Shanghai 200235 and 3Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, School of Life Sciences and Technology, Tongji University, Shanghai 200092, 2Shanghai Center for Bioinformation Technology, 100 Qinzhou Road, Shanghai 200235 and 3Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China","institution_ids":["https://openalex.org/I4210162648","https://openalex.org/I116953780","https://openalex.org/I4210106477"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100411606","display_name":"Xiaojing Wang","orcid":"https://orcid.org/0000-0003-0631-5727"},"institutions":[{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]},{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaojing Wang","raw_affiliation_strings":["Department of Biomedical Engineering, School of Life Sciences and Technology, Tongji University, Shanghai 200092, 2Shanghai Center for Bioinformation Technology, 100 Qinzhou Road, Shanghai 200235 and 3Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, School of Life Sciences and Technology, Tongji University, Shanghai 200092, 2Shanghai Center for Bioinformation Technology, 100 Qinzhou Road, Shanghai 200235 and 3Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China","institution_ids":["https://openalex.org/I4210162648","https://openalex.org/I116953780","https://openalex.org/I4210106477"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102308740","display_name":"Xiaolian Xu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]},{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaolian Xu","raw_affiliation_strings":["Department of Biomedical Engineering, School of Life Sciences and Technology, Tongji University, Shanghai 200092, 2Shanghai Center for Bioinformation Technology, 100 Qinzhou Road, Shanghai 200235 and 3Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, School of Life Sciences and Technology, Tongji University, Shanghai 200092, 2Shanghai Center for Bioinformation Technology, 100 Qinzhou Road, Shanghai 200235 and 3Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China","institution_ids":["https://openalex.org/I4210162648","https://openalex.org/I116953780","https://openalex.org/I4210106477"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061697130","display_name":"Lin Tao","orcid":"https://orcid.org/0000-0001-7494-4758"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lin Tao","raw_affiliation_strings":["Department of Biomedical Engineering, School of Life Sciences and Technology, Tongji University, Shanghai 200092, 2Shanghai Center for Bioinformation Technology, 100 Qinzhou Road, Shanghai 200235 and 3Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, School of Life Sciences and Technology, Tongji University, Shanghai 200092, 2Shanghai Center for Bioinformation Technology, 100 Qinzhou Road, Shanghai 200235 and 3Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China","institution_ids":["https://openalex.org/I4210162648","https://openalex.org/I116953780","https://openalex.org/I4210106477"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064567712","display_name":"Yuhan Li","orcid":"https://orcid.org/0009-0005-0713-1446"},"institutions":[{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]},{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]},{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Y. X. Li","raw_affiliation_strings":["Department of Biomedical Engineering, School of Life Sciences and Technology, Tongji University, Shanghai 200092, 2Shanghai Center for Bioinformation Technology, 100 Qinzhou Road, Shanghai 200235 and 3Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, School of Life Sciences and Technology, Tongji University, Shanghai 200092, 2Shanghai Center for Bioinformation Technology, 100 Qinzhou Road, Shanghai 200235 and 3Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China","institution_ids":["https://openalex.org/I4210162648","https://openalex.org/I116953780","https://openalex.org/I4210106477"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101574641","display_name":"Zhiwei Cao","orcid":"https://orcid.org/0000-0003-1165-1928"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Z. W. Cao","raw_affiliation_strings":["Department of Biomedical Engineering, School of Life Sciences and Technology, Tongji University, Shanghai 200092, 2Shanghai Center for Bioinformation Technology, 100 Qinzhou Road, Shanghai 200235 and 3Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, School of Life Sciences and Technology, Tongji University, Shanghai 200092, 2Shanghai Center for Bioinformation Technology, 100 Qinzhou Road, Shanghai 200235 and 3Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China","institution_ids":["https://openalex.org/I4210162648","https://openalex.org/I116953780","https://openalex.org/I4210106477"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5101478419"],"corresponding_institution_ids":["https://openalex.org/I116953780","https://openalex.org/I4210106477","https://openalex.org/I4210162648"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":3.3545,"has_fulltext":false,"cited_by_count":177,"citation_normalized_percentile":{"value":0.92897563,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"37","issue":"suppl_2","first_page":"W612","last_page":"W616"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.8492356538772583},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.62021803855896},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5320295691490173},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5151028037071228},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5086096525192261},{"id":"https://openalex.org/keywords/residue","display_name":"Residue (chemistry)","score":0.46409574151039124},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.4561746120452881},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4434359073638916},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.35181719064712524},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33653438091278076},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.33608394861221313},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.27666401863098145},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.27421435713768005},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.183950275182724},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17131736874580383},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.08844533562660217},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.08461320400238037}],"concepts":[{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.8492356538772583},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.62021803855896},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5320295691490173},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5151028037071228},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5086096525192261},{"id":"https://openalex.org/C2781338088","wikidata":"https://www.wikidata.org/wiki/Q903495","display_name":"Residue (chemistry)","level":2,"score":0.46409574151039124},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.4561746120452881},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4434359073638916},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.35181719064712524},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33653438091278076},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.33608394861221313},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.27666401863098145},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.27421435713768005},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.183950275182724},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17131736874580383},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.08844533562660217},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.08461320400238037},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018604","descriptor_name":"Epitope Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018604","descriptor_name":"Epitope Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018604","descriptor_name":"Epitope Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkp417","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp417","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W612/16759001/gkp417.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:19465377","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19465377","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2703964","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2703964","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkp417","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp417","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W612/16759001/gkp417.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4000000059604645,"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2125866257.pdf","grobid_xml":"https://content.openalex.org/works/W2125866257.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W1979874740","https://openalex.org/W2041711656","https://openalex.org/W2065812068","https://openalex.org/W2068945309","https://openalex.org/W2103313179","https://openalex.org/W2130479394","https://openalex.org/W2140468230","https://openalex.org/W2149984099","https://openalex.org/W2158781610","https://openalex.org/W2158899863","https://openalex.org/W2161337380","https://openalex.org/W4248336238","https://openalex.org/W6660862358"],"related_works":["https://openalex.org/W1979044599","https://openalex.org/W2021824670","https://openalex.org/W2009867644","https://openalex.org/W2363997565","https://openalex.org/W1981120125","https://openalex.org/W3036615648","https://openalex.org/W2408448169","https://openalex.org/W2182598264","https://openalex.org/W2075879923","https://openalex.org/W2060253881"],"abstract_inverted_index":{"In":[0,53,129],"recent":[1],"years,":[2],"a":[3,33,58,107],"lot":[4],"of":[5,23,56,60,63,89,111,148],"efforts":[6],"have":[7],"been":[8],"made":[9],"in":[10,75],"conformational":[11],"epitope":[12,38,151],"prediction":[13,39],"as":[14],"antigen":[15],"proteins":[16],"usually":[17],"bind":[18],"antibodies":[19],"with":[20,42,114],"an":[21,99],"assembly":[22],"sequentially":[24],"discontinuous":[25],"and":[26,105,127,138],"structurally":[27],"compact":[28],"surface":[29,90],"residues.":[30,91],"Currently,":[31],"only":[32],"few":[34],"methods":[35,123],"for":[36,134],"spatial":[37,73,87,150],"are":[40,140],"available":[41],"focus":[43],"on":[44],"single":[45],"residue":[46,64],"propensity":[47],"scales":[48],"or":[49],"continual":[50],"segments":[51],"clustering.":[52],"the":[54,71,86,131,145,149],"method":[55],"SEPPA,":[57],"concept":[59],"'unit":[61],"patch":[62],"triangle'":[65],"was":[66],"introduced":[67],"to":[68,84,143],"better":[69],"describe":[70,85],"local":[72],"context":[74],"protein":[76],"surface.":[77],"Besides":[78],"that,":[79],"SEPPA":[80,97,116],"incorporated":[81],"clustering":[82],"coefficient":[83],"compactness":[88],"Validated":[92],"by":[93],"independent":[94],"testing":[95],"datasets,":[96],"gave":[98],"average":[100],"AUC":[101],"value":[102],"over":[103,120],"0.742":[104],"produced":[106],"successful":[108],"pick-up":[109],"rate":[110],"96.64%.":[112],"Comparing":[113],"peers,":[115],"shows":[117],"significant":[118],"improvement":[119],"other":[121],"popular":[122],"like":[124],"CEP,":[125],"DiscoTope":[126],"BEpro.":[128],"addition,":[130],"threshold":[132],"scores":[133],"certain":[135],"accuracy,":[136],"sensitivity":[137],"specificity":[139],"provided":[141],"online":[142],"give":[144],"confidence":[146],"level":[147],"identification.":[152],"The":[153],"web":[154],"server":[155],"can":[156],"be":[157],"accessed":[158],"at":[159],"http://lifecenter.sgst.cn/seppa/index.php.":[160],"Batch":[161],"query":[162],"is":[163],"supported.":[164]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":17},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":12},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":13},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":17},{"year":2014,"cited_by_count":19},{"year":2013,"cited_by_count":16},{"year":2012,"cited_by_count":12}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
