{"id":"https://openalex.org/W2139655181","doi":"https://doi.org/10.1093/nar/gkp416","title":"GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information","display_name":"GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information","publication_year":2009,"publication_date":"2009-05-22","ids":{"openalex":"https://openalex.org/W2139655181","doi":"https://doi.org/10.1093/nar/gkp416","mag":"2139655181","pmid":"https://pubmed.ncbi.nlm.nih.gov/19465387"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkp416","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp416","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W317/3954767/gkp416.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W317/3954767/gkp416.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081010307","display_name":"Rub\u00e9n Nogales\u2010Cadenas","orcid":null},"institutions":[{"id":"https://openalex.org/I121748325","display_name":"Universidad Complutense de Madrid","ror":"https://ror.org/02p0gd045","country_code":"ES","type":"education","lineage":["https://openalex.org/I121748325"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"R. Nogales-Cadenas","raw_affiliation_strings":["Computer Architecture Department, Complutense University of Madrid, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Architecture Department, Complutense University of Madrid, Madrid, Spain","institution_ids":["https://openalex.org/I121748325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079394518","display_name":"Pedro Carmona\u2010S\u00e1ez","orcid":"https://orcid.org/0000-0002-6173-7255"},"institutions":[{"id":"https://openalex.org/I4210104776","display_name":"Centro Nacional de Biotecnolog\u00eda","ror":"https://ror.org/015w4v032","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210104776"]},{"id":"https://openalex.org/I121748325","display_name":"Universidad Complutense de Madrid","ror":"https://ror.org/02p0gd045","country_code":"ES","type":"education","lineage":["https://openalex.org/I121748325"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"P. Carmona-Saez","raw_affiliation_strings":["Computer Architecture Department, 2Software Engineering Department, Complutense University of Madrid and 3Biocomputing Unit, National Center for Biotechnology, CNB-CSIC, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Architecture Department, 2Software Engineering Department, Complutense University of Madrid and 3Biocomputing Unit, National Center for Biotechnology, CNB-CSIC, Madrid, Spain","institution_ids":["https://openalex.org/I4210104776","https://openalex.org/I121748325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008971014","display_name":"Migu\u00e9l V\u00e1zquez","orcid":"https://orcid.org/0000-0002-5713-1058"},"institutions":[{"id":"https://openalex.org/I121748325","display_name":"Universidad Complutense de Madrid","ror":"https://ror.org/02p0gd045","country_code":"ES","type":"education","lineage":["https://openalex.org/I121748325"]},{"id":"https://openalex.org/I4210104776","display_name":"Centro Nacional de Biotecnolog\u00eda","ror":"https://ror.org/015w4v032","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210104776"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"M. Vazquez","raw_affiliation_strings":["Computer Architecture Department, 2Software Engineering Department, Complutense University of Madrid and 3Biocomputing Unit, National Center for Biotechnology, CNB-CSIC, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Architecture Department, 2Software Engineering Department, Complutense University of Madrid and 3Biocomputing Unit, National Center for Biotechnology, CNB-CSIC, Madrid, Spain","institution_ids":["https://openalex.org/I4210104776","https://openalex.org/I121748325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065861193","display_name":"Carmen Vicente","orcid":"https://orcid.org/0000-0002-3363-3459"},"institutions":[{"id":"https://openalex.org/I4210104776","display_name":"Centro Nacional de Biotecnolog\u00eda","ror":"https://ror.org/015w4v032","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210104776"]},{"id":"https://openalex.org/I121748325","display_name":"Universidad Complutense de Madrid","ror":"https://ror.org/02p0gd045","country_code":"ES","type":"education","lineage":["https://openalex.org/I121748325"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"C. Vicente","raw_affiliation_strings":["Computer Architecture Department, 2Software Engineering Department, Complutense University of Madrid and 3Biocomputing Unit, National Center for Biotechnology, CNB-CSIC, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Architecture Department, 2Software Engineering Department, Complutense University of Madrid and 3Biocomputing Unit, National Center for Biotechnology, CNB-CSIC, Madrid, Spain","institution_ids":["https://openalex.org/I4210104776","https://openalex.org/I121748325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101798004","display_name":"Xiaoyuan Yang","orcid":"https://orcid.org/0000-0003-1111-4516"},"institutions":[{"id":"https://openalex.org/I121748325","display_name":"Universidad Complutense de Madrid","ror":"https://ror.org/02p0gd045","country_code":"ES","type":"education","lineage":["https://openalex.org/I121748325"]},{"id":"https://openalex.org/I4210104776","display_name":"Centro Nacional de Biotecnolog\u00eda","ror":"https://ror.org/015w4v032","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210104776"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"X. Yang","raw_affiliation_strings":["Computer Architecture Department, 2Software Engineering Department, Complutense University of Madrid and 3Biocomputing Unit, National Center for Biotechnology, CNB-CSIC, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Architecture Department, 2Software Engineering Department, Complutense University of Madrid and 3Biocomputing Unit, National Center for Biotechnology, CNB-CSIC, Madrid, Spain","institution_ids":["https://openalex.org/I4210104776","https://openalex.org/I121748325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062402935","display_name":"Francisco Tirado","orcid":"https://orcid.org/0000-0003-0974-2687"},"institutions":[{"id":"https://openalex.org/I4210104776","display_name":"Centro Nacional de Biotecnolog\u00eda","ror":"https://ror.org/015w4v032","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210104776"]},{"id":"https://openalex.org/I121748325","display_name":"Universidad Complutense de Madrid","ror":"https://ror.org/02p0gd045","country_code":"ES","type":"education","lineage":["https://openalex.org/I121748325"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"F. Tirado","raw_affiliation_strings":["Computer Architecture Department, 2Software Engineering Department, Complutense University of Madrid and 3Biocomputing Unit, National Center for Biotechnology, CNB-CSIC, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Architecture Department, 2Software Engineering Department, Complutense University of Madrid and 3Biocomputing Unit, National Center for Biotechnology, CNB-CSIC, Madrid, Spain","institution_ids":["https://openalex.org/I4210104776","https://openalex.org/I121748325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046960969","display_name":"J.M. Carazo","orcid":"https://orcid.org/0000-0003-0788-8447"},"institutions":[{"id":"https://openalex.org/I121748325","display_name":"Universidad Complutense de Madrid","ror":"https://ror.org/02p0gd045","country_code":"ES","type":"education","lineage":["https://openalex.org/I121748325"]},{"id":"https://openalex.org/I4210104776","display_name":"Centro Nacional de Biotecnolog\u00eda","ror":"https://ror.org/015w4v032","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210104776"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"J. M. Carazo","raw_affiliation_strings":["Computer Architecture Department, 2Software Engineering Department, Complutense University of Madrid and 3Biocomputing Unit, National Center for Biotechnology, CNB-CSIC, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Architecture Department, 2Software Engineering Department, Complutense University of Madrid and 3Biocomputing Unit, National Center for Biotechnology, CNB-CSIC, Madrid, Spain","institution_ids":["https://openalex.org/I4210104776","https://openalex.org/I121748325"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054828239","display_name":"A. Pascual-Montano","orcid":null},"institutions":[{"id":"https://openalex.org/I4210104776","display_name":"Centro Nacional de Biotecnolog\u00eda","ror":"https://ror.org/015w4v032","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210104776"]},{"id":"https://openalex.org/I121748325","display_name":"Universidad Complutense de Madrid","ror":"https://ror.org/02p0gd045","country_code":"ES","type":"education","lineage":["https://openalex.org/I121748325"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"A. Pascual-Montano","raw_affiliation_strings":["Computer Architecture Department,","Computer Architecture Department, 2Software Engineering Department, Complutense University of Madrid and 3Biocomputing Unit, National Center for Biotechnology, CNB-CSIC, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Architecture Department,","institution_ids":[]},{"raw_affiliation_string":"Computer Architecture Department, 2Software Engineering Department, Complutense University of Madrid and 3Biocomputing Unit, National Center for Biotechnology, CNB-CSIC, Madrid, Spain","institution_ids":["https://openalex.org/I4210104776","https://openalex.org/I121748325"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5081010307"],"corresponding_institution_ids":["https://openalex.org/I121748325"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":14.3627,"has_fulltext":true,"cited_by_count":437,"citation_normalized_percentile":{"value":0.99381378,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"37","issue":"Web Server","first_page":"W317","last_page":"W322"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7404431104660034},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.7139729261398315},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.6371670365333557},{"id":"https://openalex.org/keywords/scope","display_name":"Scope (computer science)","score":0.5872886180877686},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5679309964179993},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.533789336681366},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5091609358787537},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4933282434940338},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.47720178961753845},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.43645384907722473},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.4121151268482208},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.38708335161209106},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2056940197944641}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7404431104660034},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.7139729261398315},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.6371670365333557},{"id":"https://openalex.org/C2778012447","wikidata":"https://www.wikidata.org/wiki/Q1034415","display_name":"Scope (computer science)","level":2,"score":0.5872886180877686},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5679309964179993},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.533789336681366},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5091609358787537},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4933282434940338},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.47720178961753845},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.43645384907722473},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.4121151268482208},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.38708335161209106},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2056940197944641},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C58226133","wikidata":"https://www.wikidata.org/wiki/Q1324199","display_name":"Pulmonary surfactant","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C55352822","wikidata":"https://www.wikidata.org/wiki/Q5558978","display_name":"Gibbs isotherm","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkp416","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp416","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W317/3954767/gkp416.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:19465387","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19465387","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:digibug.ugr.es:10481/88095","is_oa":true,"landing_page_url":"https://hdl.handle.net/10481/88095","pdf_url":"https://digibug.ugr.es/bitstream/10481/88095/1/Genecodis2_preprint.pdf","source":{"id":"https://openalex.org/S4306400567","display_name":"Institutional Repository of the University of Granada (University of Granada)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I173304897","host_organization_name":"Universidad de Granada","host_organization_lineage":["https://openalex.org/I173304897"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.936.2657","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.936.2657","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/37/suppl_2/W317.full.pdf","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:2703901","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2703901","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:www.ucm.es:35639","is_oa":false,"landing_page_url":"http://eprints.ucm.es/35639/1/tirado17libre%2BCC.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4306400298","display_name":"Library Open Repository (Universidad Complutense Madrid)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I121748325","host_organization_name":"Universidad Complutense de Madrid","host_organization_lineage":["https://openalex.org/I121748325"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkp416","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp416","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W317/3954767/gkp416.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3947446829","display_name":null,"funder_award_id":"FP7-HEALTH-F4-2008","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4559735034","display_name":null,"funder_award_id":"202047","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7660958382","display_name":null,"funder_award_id":"HEALTH-F4-2008-202047","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320324787","display_name":"Peking University","ror":"https://ror.org/02v51f717"},{"id":"https://openalex.org/F4320325124","display_name":"CYTED Ciencia y Tecnolog\u00eda para el Desarrollo","ror":"https://ror.org/03myqtf56"},{"id":"https://openalex.org/F4320338377","display_name":"FP7 Health","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2139655181.pdf","grobid_xml":"https://content.openalex.org/works/W2139655181.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1532476473","https://openalex.org/W1542849663","https://openalex.org/W1985035274","https://openalex.org/W2008682752","https://openalex.org/W2019234246","https://openalex.org/W2070571588","https://openalex.org/W2085442947","https://openalex.org/W2103017472","https://openalex.org/W2104488717","https://openalex.org/W2122683221","https://openalex.org/W2123060905","https://openalex.org/W2126602684","https://openalex.org/W2130410032","https://openalex.org/W2133465414","https://openalex.org/W2135230352","https://openalex.org/W2158100548","https://openalex.org/W2171612826"],"related_works":["https://openalex.org/W4378651134","https://openalex.org/W1979633005","https://openalex.org/W2046765700","https://openalex.org/W2352307597","https://openalex.org/W2163724607","https://openalex.org/W1980092392","https://openalex.org/W2608983118","https://openalex.org/W1981780420","https://openalex.org/W262455470","https://openalex.org/W2182707996"],"abstract_inverted_index":{"GeneCodis":[0,56,112],"is":[1,84,137],"a":[2,41,118],"web":[3,121],"server":[4],"application":[5,100,136],"for":[6,33],"functional":[7,60],"analysis":[8,128],"of":[9,16,22,36,44,71,75],"gene":[10,91],"lists":[11],"that":[12],"integrates":[13],"different":[14],"sources":[15,74],"information":[17,61,76],"and":[18,39,54,65,87,90,108,133],"finds":[19],"modular":[20],"patterns":[21,64],"interrelated":[23],"annotations.":[24],"This":[25],"integrative":[26],"approach":[27],"has":[28,47,101],"proved":[29],"to":[30,50,96,104,126],"be":[31,115],"useful":[32],"the":[34,45,59,69,78,97],"interpretation":[35],"high-throughput":[37],"experiments":[38],"therefore":[40],"new":[42],"version":[43],"system":[46],"been":[48,94,102],"developed":[49],"expand":[51],"its":[52],"functionality":[53],"scope.":[55],"now":[57,85,114],"expands":[58],"with":[62],"regulatory":[63],"user-defined":[66],"annotations,":[67],"offering":[68],"possibility":[70],"integrating":[72],"all":[73],"in":[77],"same":[79],"analysis.":[80],"Traditional":[81],"singular":[82],"enrichment":[83],"permitted":[86],"more":[88],"organisms":[89],"identifiers":[92],"have":[93],"added":[95],"database.":[98],"The":[99,135],"re-engineered":[103],"improve":[105],"performance,":[106],"accessibility":[107],"scalability.":[109],"In":[110],"addition,":[111],"can":[113],"accessed":[116],"through":[117],"public":[119],"SOAP":[120],"services":[122],"interface,":[123],"enabling":[124],"users":[125],"perform":[127],"from":[129],"their":[130],"own":[131],"scripts":[132],"workflows.":[134],"freely":[138],"available":[139],"at":[140],"http://genecodis.dacya.ucm.es.":[141]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":21},{"year":2020,"cited_by_count":30},{"year":2019,"cited_by_count":19},{"year":2018,"cited_by_count":34},{"year":2017,"cited_by_count":39},{"year":2016,"cited_by_count":30},{"year":2015,"cited_by_count":45},{"year":2014,"cited_by_count":35},{"year":2013,"cited_by_count":45},{"year":2012,"cited_by_count":42}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
