{"id":"https://openalex.org/W2045266215","doi":"https://doi.org/10.1093/nar/gkp387","title":"RosettaAntibody: antibody variable region homology modeling server","display_name":"RosettaAntibody: antibody variable region homology modeling server","publication_year":2009,"publication_date":"2009-05-20","ids":{"openalex":"https://openalex.org/W2045266215","doi":"https://doi.org/10.1093/nar/gkp387","mag":"2045266215","pmid":"https://pubmed.ncbi.nlm.nih.gov/19458157"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkp387","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp387","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W474/3943121/gkp387.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W474/3943121/gkp387.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078952937","display_name":"Amit Sircar","orcid":null},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. Sircar","raw_affiliation_strings":["Department of Chemical and Biomolecular Engineering, Johns Hopkins University, 3400 N. Charles Street, Baltimore, MD 21218, USA","Department of Chemical & Biomolecular Engineering, Johns Hopkins University, 3400 N. Charles Street, Baltimore, MD 21218, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemical and Biomolecular Engineering, Johns Hopkins University, 3400 N. Charles Street, Baltimore, MD 21218, USA","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Department of Chemical & Biomolecular Engineering, Johns Hopkins University, 3400 N. Charles Street, Baltimore, MD 21218, USA","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101585991","display_name":"Eui Tae Kim","orcid":"https://orcid.org/0000-0002-1631-3197"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I4210116091","display_name":"Department of Physics, Mathematics and Informatics","ror":"https://ror.org/023sm4k53","country_code":"BY","type":"facility","lineage":["https://openalex.org/I151823869","https://openalex.org/I4210116091"]}],"countries":["BY","US"],"is_corresponding":false,"raw_author_name":"E. T. Kim","raw_affiliation_strings":["Department of Biomedical Engineering and Department of Computer Science,","Johns Hopkins University, Baltimore, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering and Department of Computer Science,","institution_ids":["https://openalex.org/I4210116091"]},{"raw_affiliation_string":"Johns Hopkins University, Baltimore, United States","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009383312","display_name":"Jeffrey J. Gray","orcid":"https://orcid.org/0000-0001-6380-2324"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. J. Gray","raw_affiliation_strings":["Johns Hopkins University, Baltimore, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Johns Hopkins University, Baltimore, United States","institution_ids":["https://openalex.org/I145311948"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":7.9568,"has_fulltext":true,"cited_by_count":161,"citation_normalized_percentile":{"value":0.97660503,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"37","issue":"Web Server","first_page":"W474","last_page":"W479"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11124","display_name":"Protein purification and stability","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9505175352096558},{"id":"https://openalex.org/keywords/homology","display_name":"Homology (biology)","score":0.6538742780685425},{"id":"https://openalex.org/keywords/sequence-homology","display_name":"Sequence homology","score":0.478046715259552},{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.4752630591392517},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.46041399240493774},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4396265745162964},{"id":"https://openalex.org/keywords/base-sequence","display_name":"Base sequence","score":0.30513691902160645},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.22300556302070618},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.17316007614135742}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9505175352096558},{"id":"https://openalex.org/C165525559","wikidata":"https://www.wikidata.org/wiki/Q224180","display_name":"Homology (biology)","level":3,"score":0.6538742780685425},{"id":"https://openalex.org/C2779315201","wikidata":"https://www.wikidata.org/wiki/Q414601","display_name":"Sequence homology","level":4,"score":0.478046715259552},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.4752630591392517},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46041399240493774},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4396265745162964},{"id":"https://openalex.org/C3017666073","wikidata":"https://www.wikidata.org/wiki/Q1764062","display_name":"Base sequence","level":3,"score":0.30513691902160645},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.22300556302070618},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17316007614135742}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007135","descriptor_name":"Immunoglobulin Variable Region","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D007135","descriptor_name":"Immunoglobulin Variable Region","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D007135","descriptor_name":"Immunoglobulin Variable Region","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D007135","descriptor_name":"Immunoglobulin Variable Region","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D007143","descriptor_name":"Immunoglobulin Heavy Chains","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D007143","descriptor_name":"Immunoglobulin Heavy Chains","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D007143","descriptor_name":"Immunoglobulin Heavy Chains","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D007143","descriptor_name":"Immunoglobulin Heavy Chains","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D007147","descriptor_name":"Immunoglobulin Light Chains","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D007147","descriptor_name":"Immunoglobulin Light Chains","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D007147","descriptor_name":"Immunoglobulin Light Chains","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D007147","descriptor_name":"Immunoglobulin Light Chains","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D022801","descriptor_name":"Complementarity Determining Regions","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D022801","descriptor_name":"Complementarity Determining Regions","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D022801","descriptor_name":"Complementarity Determining Regions","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D022801","descriptor_name":"Complementarity Determining Regions","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkp387","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp387","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W474/3943121/gkp387.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:19458157","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19458157","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.358.6178","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.358.6178","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/dc/46/Nucleic_Acids_Res_2009_Jul_1_37(Web_Server_issue)_W474-W479.tar.gz","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.581.3001","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.581.3001","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/37/suppl_2/W474.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:2703951","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2703951","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkp387","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp387","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W474/3943121/gkp387.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4832339229","display_name":null,"funder_award_id":"GM078221","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5291639407","display_name":null,"funder_award_id":"R01-GM078221","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6339529575","display_name":null,"funder_award_id":"GM073151","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320316950","display_name":"Union Chimique Belge","ror":"https://ror.org/01n029866"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2045266215.pdf","grobid_xml":"https://content.openalex.org/works/W2045266215.grobid-xml"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W162863286","https://openalex.org/W1548178570","https://openalex.org/W1968922152","https://openalex.org/W1977829473","https://openalex.org/W1989320890","https://openalex.org/W2019691413","https://openalex.org/W2028231353","https://openalex.org/W2030074569","https://openalex.org/W2036000659","https://openalex.org/W2040276092","https://openalex.org/W2047000799","https://openalex.org/W2055043387","https://openalex.org/W2067484689","https://openalex.org/W2070724962","https://openalex.org/W2071200955","https://openalex.org/W2071739012","https://openalex.org/W2075097399","https://openalex.org/W2083028331","https://openalex.org/W2083995470","https://openalex.org/W2102686641","https://openalex.org/W2103077855","https://openalex.org/W2109402847","https://openalex.org/W2112743424","https://openalex.org/W2118621584","https://openalex.org/W2122987940","https://openalex.org/W2129153475","https://openalex.org/W2129414710","https://openalex.org/W2130031978","https://openalex.org/W2130479394","https://openalex.org/W2131900949","https://openalex.org/W2133712572","https://openalex.org/W2134059200","https://openalex.org/W2134731229","https://openalex.org/W2137604324","https://openalex.org/W2143467722","https://openalex.org/W2146134187","https://openalex.org/W2151460035","https://openalex.org/W2153255725","https://openalex.org/W2153983456","https://openalex.org/W2154106236","https://openalex.org/W2158781610","https://openalex.org/W2160514392","https://openalex.org/W2162561057","https://openalex.org/W2164130591","https://openalex.org/W2166021114","https://openalex.org/W2166103775","https://openalex.org/W2166317516","https://openalex.org/W2167271811","https://openalex.org/W2167581550","https://openalex.org/W2168962590","https://openalex.org/W4236236547"],"related_works":["https://openalex.org/W2373327015","https://openalex.org/W2365352214","https://openalex.org/W2034554207","https://openalex.org/W2386533626","https://openalex.org/W2084391532","https://openalex.org/W3151890006","https://openalex.org/W2370259341","https://openalex.org/W2163211634","https://openalex.org/W2025026055","https://openalex.org/W2040531554"],"abstract_inverted_index":{"The":[0,97,145,173],"RosettaAntibody":[1,87,124,178],"server":[2,28,69,83,131],"(http://antibody.graylab.jhu.edu)":[3],"predicts":[4],"the":[5,13,17,27,32,39,48,55,68,82,85,92,106,115,119,130,141,156,162,183],"structure":[6],"of":[7,16,47,118,186],"an":[8,24,165],"antibody":[9],"variable":[10],"region":[11,51],"given":[12],"amino-acid":[14],"sequences":[15],"respective":[18],"light":[19,40,120],"and":[20,30,41,45,67,73,111,121,129,136],"heavy":[21,42,122],"chains.":[22,123],"In":[23],"initial":[25],"stage,":[26],"identifies":[29],"displays":[31],"most":[33,56],"sequence":[34],"homologous":[35,57],"template":[36],"structures":[37],"for":[38,140,167,182],"framework":[43],"regions":[44],"each":[46],"complementarity":[49],"determining":[50],"(CDR)":[52],"loops.":[53],"Subsequently,":[54],"templates":[58],"are":[59],"assembled":[60],"into":[61],"a":[62,71,79],"side-chain":[63],"optimized":[64],"crude":[65],"model,":[66,81],"returns":[70,132],"picture":[72],"coordinate":[74,134],"file.":[75],"For":[76],"users":[77,149],"requesting":[78],"high-resolution":[80,98,174],"executes":[84],"full":[86],"protocol":[88,99],"which":[89],"additionally":[90],"models":[91,147,175],"hyper-variable":[93],"CDR":[94,107],"H3":[95],"loop.":[96],"also":[100],"relieves":[101],"steric":[102],"clashes":[103],"by":[104,112,177],"optimizing":[105],"backbone":[108],"torsion":[109],"angles":[110],"simultaneously":[113],"perturbing":[114],"relative":[116],"orientation":[117],"generates":[125],"2000":[126],"independent":[127],"structures,":[128],"pictures,":[133],"files,":[135],"detailed":[137],"scoring":[138],"information":[139],"10":[142,146],"top-scoring":[143],"models.":[144],"enable":[148],"to":[150,160],"use":[151,161],"rational":[152],"judgment":[153],"in":[154],"choosing":[155],"best":[157],"model":[158],"or":[159],"set":[163],"as":[164,171],"ensemble":[166],"further":[168],"studies":[169],"such":[170],"docking.":[172],"generated":[176],"have":[179],"been":[180],"used":[181],"successful":[184],"prediction":[185],"antibody-antigen":[187],"complex":[188],"structures.":[189]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":10},{"year":2017,"cited_by_count":18},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":11},{"year":2014,"cited_by_count":15},{"year":2013,"cited_by_count":10},{"year":2012,"cited_by_count":15}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
