{"id":"https://openalex.org/W1972397861","doi":"https://doi.org/10.1093/nar/gkp355","title":"Hyperlink Management System and ID Converter System: enabling maintenance-free hyperlinks among major biological databases","display_name":"Hyperlink Management System and ID Converter System: enabling maintenance-free hyperlinks among major biological databases","publication_year":2009,"publication_date":"2009-05-19","ids":{"openalex":"https://openalex.org/W1972397861","doi":"https://doi.org/10.1093/nar/gkp355","mag":"1972397861","pmid":"https://pubmed.ncbi.nlm.nih.gov/19454601"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkp355","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp355","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W17/3932743/gkp355.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W17/3932743/gkp355.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023402430","display_name":"Tadashi Imanishi","orcid":"https://orcid.org/0000-0002-1182-9127"},"institutions":[{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"T. Imanishi","raw_affiliation_strings":["Biomedicinal Information Research Center, National Institute of Advanced Industrial Science and Technology, 2-42 Aomi, Koto-ku, Tokyo 135-0064, Japan. t.imanishi@aist.go.jp","National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan"],"affiliations":[{"raw_affiliation_string":"Biomedicinal Information Research Center, National Institute of Advanced Industrial Science and Technology, 2-42 Aomi, Koto-ku, Tokyo 135-0064, Japan. t.imanishi@aist.go.jp","institution_ids":["https://openalex.org/I73613424"]},{"raw_affiliation_string":"National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan","institution_ids":["https://openalex.org/I73613424"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000240589","display_name":"Hajime Nakaoka","orcid":null},"institutions":[{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"H. Nakaoka","raw_affiliation_strings":["National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan"],"affiliations":[{"raw_affiliation_string":"National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan","institution_ids":["https://openalex.org/I73613424"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5023402430"],"corresponding_institution_ids":["https://openalex.org/I73613424"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.4761,"has_fulltext":true,"cited_by_count":29,"citation_normalized_percentile":{"value":0.80623185,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"37","issue":"Web Server","first_page":"W17","last_page":"W22"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9894999861717224,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9817000031471252,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.8982281684875488},{"id":"https://openalex.org/keywords/hyperlink","display_name":"Hyperlink","score":0.8935267925262451},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5669759511947632},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.5386810898780823},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5304267406463623},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.49155959486961365},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.42267847061157227},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.35988402366638184},{"id":"https://openalex.org/keywords/web-page","display_name":"Web page","score":0.2716832756996155},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.25022172927856445},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12001150846481323}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.8982281684875488},{"id":"https://openalex.org/C30088001","wikidata":"https://www.wikidata.org/wiki/Q102014","display_name":"Hyperlink","level":3,"score":0.8935267925262451},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5669759511947632},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.5386810898780823},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5304267406463623},{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.49155959486961365},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.42267847061157227},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.35988402366638184},{"id":"https://openalex.org/C21959979","wikidata":"https://www.wikidata.org/wiki/Q36774","display_name":"Web page","level":2,"score":0.2716832756996155},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.25022172927856445},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12001150846481323},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkp355","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp355","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W17/3932743/gkp355.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:19454601","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19454601","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2703917","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2703917","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkp355","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp355","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W17/3932743/gkp355.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4099999964237213,"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production"}],"awards":[{"id":"https://openalex.org/G4611969921","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"},{"id":"https://openalex.org/G4864544293","display_name":null,"funder_award_id":"Japan","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"},{"id":"https://openalex.org/G7485138276","display_name":null,"funder_award_id":"Technology","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"}],"funders":[{"id":"https://openalex.org/F4320311508","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54"},{"id":"https://openalex.org/F4320321679","display_name":"Ministry of Economy, Trade and Industry","ror":"https://ror.org/055tm7f07"},{"id":"https://openalex.org/F4320334789","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19"},{"id":"https://openalex.org/F4320334833","display_name":"Agency for Natural Resources and Energy","ror":"https://ror.org/055tm7f07"},{"id":"https://openalex.org/F4320338401","display_name":"Brain Injury Research Center","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1972397861.pdf","grobid_xml":"https://content.openalex.org/works/W1972397861.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W2004326202","https://openalex.org/W2040368226","https://openalex.org/W2061742318","https://openalex.org/W2074426357","https://openalex.org/W2077207291","https://openalex.org/W2086255487","https://openalex.org/W2091940856","https://openalex.org/W2096525273","https://openalex.org/W2097771645","https://openalex.org/W2099275700","https://openalex.org/W2104502907","https://openalex.org/W2108781775","https://openalex.org/W2145276133","https://openalex.org/W2161062388","https://openalex.org/W2161162408","https://openalex.org/W2164957457","https://openalex.org/W4210430020","https://openalex.org/W4211000692","https://openalex.org/W4212865600","https://openalex.org/W4250297812","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2162388472","https://openalex.org/W2116726748","https://openalex.org/W3132544722","https://openalex.org/W3181892255","https://openalex.org/W2098932404","https://openalex.org/W4232154957","https://openalex.org/W2103435205","https://openalex.org/W2022209941","https://openalex.org/W4292058683","https://openalex.org/W4205671017"],"abstract_inverted_index":{"Hyperlink":[0],"Management":[1],"System":[2,179],"(HMS)":[3],"is":[4,146],"a":[5,41,133,161],"system":[6],"for":[7,34,49,136,181],"automatically":[8],"updating":[9,157],"and":[10,37,39,46,77,83,85,104,138,195],"maintaining":[11],"hyperlinks":[12,158],"among":[13,154],"major":[14,32],"public":[15],"databases":[16,33,54],"in":[17,190],"the":[18,124,128,130,168,176,191],"field":[19],"of":[20,28,31,52,69,79,90,111,114,141,150],"life":[21],"science.":[22],"We":[23,173],"daily":[24],"create":[25],"corresponding":[26,188],"tables":[27,189],"data":[29,51,153,184],"IDs":[30,78,185],"human":[35],"genes":[36],"proteins,":[38],"provide":[40],"CGI-program":[42],"that":[43,55],"returns":[44],"correct":[45],"up-to-date":[47],"URLs":[48,89,140],"showing":[50],"various":[53,65,91],"correspond":[56],"to":[57],"user-specified":[58],"IDs.":[59],"The":[60,164,193],"HMS":[61,131,165,194],"can":[62,87],"deal":[63],"with":[64],"IDs:":[66],"accession":[67],"numbers":[68],"International":[70],"Nucleotide":[71],"Sequence":[72],"Databases,":[73],"HUGO":[74,94,120],"Gene":[75,95,121],"Symbols":[76,122],"UniProt,":[80,102],"PDB,":[81],"H-InvDB":[82,115],"others,":[84],"it":[86],"return":[88],"databases:":[92],"H-InvDB,":[93],"Nomenclature":[96],"Committee":[97],"Database,":[98],"NCBI":[99],"Entrez":[100],"Gene,":[101],"PDB":[103],"others.":[105],"For":[106],"example,":[107],"23":[108],"297":[109],"pages":[110],"Locus":[112],"view":[113],"are":[116,197],"reachable":[117],"by":[118,186],"using":[119,187],"through":[123],"HMS.":[125,192],"Not":[126],"only":[127],"CGI-program,":[129],"provides":[132],"Web":[134],"page":[135],"finding":[137],"opening":[139],"these":[142],"databases.":[143],"Although":[144],"hyperlinking":[145],"an":[147],"effective":[148],"way":[149],"relating":[151],"biological":[152],"different":[155],"databases,":[156],"has":[159],"been":[160],"laborious":[162],"work.":[163],"fully":[166],"automates":[167],"job,":[169],"enabling":[170],"maintenance-free":[171],"hyperlinks.":[172],"also":[174],"developed":[175],"ID":[177],"Converter":[178],"(ICS)":[180],"simply":[182],"converting":[183],"ICS":[196],"freely":[198],"available":[199],"at":[200],"http://biodb.jp/.":[201]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":5}],"updated_date":"2026-03-14T08:43:22.919905","created_date":"2025-10-10T00:00:00"}