{"id":"https://openalex.org/W2100555999","doi":"https://doi.org/10.1093/nar/gkp347","title":"miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments","display_name":"miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments","publication_year":2009,"publication_date":"2009-05-11","ids":{"openalex":"https://openalex.org/W2100555999","doi":"https://doi.org/10.1093/nar/gkp347","mag":"2100555999","pmid":"https://pubmed.ncbi.nlm.nih.gov/19433510"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkp347","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp347","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W68/16758296/gkp347.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W68/16758296/gkp347.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084745527","display_name":"Michael Hackenberg","orcid":"https://orcid.org/0000-0003-2248-3114"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Michael Hackenberg","raw_affiliation_strings":["Functional Genomics Unit, CIC bioGUNE, CIBERehd, Technology Park of Bizkaia, 48160 Derio, Bizkaia, Spain"],"affiliations":[{"raw_affiliation_string":"Functional Genomics Unit, CIC bioGUNE, CIBERehd, Technology Park of Bizkaia, 48160 Derio, Bizkaia, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111728473","display_name":"Martin Sturm","orcid":null},"institutions":[{"id":"https://openalex.org/I4210115082","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red","ror":"https://ror.org/02g87qh62","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210115082","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Zentrum M\u00fcnchen","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]},{"id":"https://openalex.org/I4210112728","display_name":"CIC bioGUNE","ror":"https://ror.org/02x5c5y60","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210112728"]}],"countries":["DE","ES"],"is_corresponding":false,"raw_author_name":"Martin Sturm","raw_affiliation_strings":["Functional Genomics Unit, CIC bioGUNE, CIBERehd, Technology Park of Bizkaia, 48160 Derio, Bizkaia, Spain,2Institute for Bioinformatics and Systems Biology, German Research Center for Environmental Health, Ingolst\u00e4dter Landstrasse 1, D-85764 Neuherberg,3Department of Genome-Oriented Bioinformatics, Wissenschaftszentrum Weihenstephan, Technische Universitat M\u00fcnchen, 85350 Freising,4Bioinformatics Group, Department of Computer Science, University of Leipzig, Haertelstr. 16-18, D-04107 Leipzig, Germany and 5Metabolomics Unit, CIC bioGUNE, CIBERehd, Technology Park of Bizkaia, 48160 Derio, Bizkaia, Spain","Technical University of Munich, Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Functional Genomics Unit, CIC bioGUNE, CIBERehd, Technology Park of Bizkaia, 48160 Derio, Bizkaia, Spain,2Institute for Bioinformatics and Systems Biology, German Research Center for Environmental Health, Ingolst\u00e4dter Landstrasse 1, D-85764 Neuherberg,3Department of Genome-Oriented Bioinformatics, Wissenschaftszentrum Weihenstephan, Technische Universitat M\u00fcnchen, 85350 Freising,4Bioinformatics Group, Department of Computer Science, University of Leipzig, Haertelstr. 16-18, D-04107 Leipzig, Germany and 5Metabolomics Unit, CIC bioGUNE, CIBERehd, Technology Park of Bizkaia, 48160 Derio, Bizkaia, Spain","institution_ids":["https://openalex.org/I4210112728","https://openalex.org/I4210115082","https://openalex.org/I3018134672","https://openalex.org/I62916508"]},{"raw_affiliation_string":"Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063034774","display_name":"David Langenberger","orcid":"https://orcid.org/0000-0001-9424-9701"},"institutions":[{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Zentrum M\u00fcnchen","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]},{"id":"https://openalex.org/I4210112728","display_name":"CIC bioGUNE","ror":"https://ror.org/02x5c5y60","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210112728"]},{"id":"https://openalex.org/I4210115082","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red","ror":"https://ror.org/02g87qh62","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210115082","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE","ES"],"is_corresponding":false,"raw_author_name":"David Langenberger","raw_affiliation_strings":["Functional Genomics Unit, CIC bioGUNE, CIBERehd, Technology Park of Bizkaia, 48160 Derio, Bizkaia, Spain,2Institute for Bioinformatics and Systems Biology, German Research Center for Environmental Health, Ingolst\u00e4dter Landstrasse 1, D-85764 Neuherberg,3Department of Genome-Oriented Bioinformatics, Wissenschaftszentrum Weihenstephan, Technische Universitat M\u00fcnchen, 85350 Freising,4Bioinformatics Group, Department of Computer Science, University of Leipzig, Haertelstr. 16-18, D-04107 Leipzig, Germany and 5Metabolomics Unit, CIC bioGUNE, CIBERehd, Technology Park of Bizkaia, 48160 Derio, Bizkaia, Spain","Technical University of Munich, Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Functional Genomics Unit, CIC bioGUNE, CIBERehd, Technology Park of Bizkaia, 48160 Derio, Bizkaia, Spain,2Institute for Bioinformatics and Systems Biology, German Research Center for Environmental Health, Ingolst\u00e4dter Landstrasse 1, D-85764 Neuherberg,3Department of Genome-Oriented Bioinformatics, Wissenschaftszentrum Weihenstephan, Technische Universitat M\u00fcnchen, 85350 Freising,4Bioinformatics Group, Department of Computer Science, University of Leipzig, Haertelstr. 16-18, D-04107 Leipzig, Germany and 5Metabolomics Unit, CIC bioGUNE, CIBERehd, Technology Park of Bizkaia, 48160 Derio, Bizkaia, Spain","institution_ids":["https://openalex.org/I4210112728","https://openalex.org/I4210115082","https://openalex.org/I3018134672","https://openalex.org/I62916508"]},{"raw_affiliation_string":"Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054735287","display_name":"Juan Manuel Falc\u00f3n\u2010P\u00e9rez","orcid":"https://orcid.org/0000-0003-3133-0670"},"institutions":[{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Zentrum M\u00fcnchen","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]},{"id":"https://openalex.org/I4210115082","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red","ror":"https://ror.org/02g87qh62","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210115082","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]},{"id":"https://openalex.org/I4210112728","display_name":"CIC bioGUNE","ror":"https://ror.org/02x5c5y60","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210112728"]}],"countries":["DE","ES"],"is_corresponding":false,"raw_author_name":"Juan Manuel Falc\u00f3n-P\u00e9rez","raw_affiliation_strings":["Functional Genomics Unit, CIC bioGUNE, CIBERehd, Technology Park of Bizkaia, 48160 Derio, Bizkaia, Spain,2Institute for Bioinformatics and Systems Biology, German Research Center for Environmental Health, Ingolst\u00e4dter Landstrasse 1, D-85764 Neuherberg,3Department of Genome-Oriented Bioinformatics, Wissenschaftszentrum Weihenstephan, Technische Universitat M\u00fcnchen, 85350 Freising,4Bioinformatics Group, Department of Computer Science, University of Leipzig, Haertelstr. 16-18, D-04107 Leipzig, Germany and 5Metabolomics Unit, CIC bioGUNE, CIBERehd, Technology Park of Bizkaia, 48160 Derio, Bizkaia, Spain","Technical University of Munich, Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Functional Genomics Unit, CIC bioGUNE, CIBERehd, Technology Park of Bizkaia, 48160 Derio, Bizkaia, Spain,2Institute for Bioinformatics and Systems Biology, German Research Center for Environmental Health, Ingolst\u00e4dter Landstrasse 1, D-85764 Neuherberg,3Department of Genome-Oriented Bioinformatics, Wissenschaftszentrum Weihenstephan, Technische Universitat M\u00fcnchen, 85350 Freising,4Bioinformatics Group, Department of Computer Science, University of Leipzig, Haertelstr. 16-18, D-04107 Leipzig, Germany and 5Metabolomics Unit, CIC bioGUNE, CIBERehd, Technology Park of Bizkaia, 48160 Derio, Bizkaia, Spain","institution_ids":["https://openalex.org/I4210112728","https://openalex.org/I4210115082","https://openalex.org/I3018134672","https://openalex.org/I62916508"]},{"raw_affiliation_string":"Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083052985","display_name":"Ana M. Aransay","orcid":"https://orcid.org/0000-0002-8271-612X"},"institutions":[{"id":"https://openalex.org/I4210115082","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red","ror":"https://ror.org/02g87qh62","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210115082","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210112728","display_name":"CIC bioGUNE","ror":"https://ror.org/02x5c5y60","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210112728"]},{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Zentrum M\u00fcnchen","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE","ES"],"is_corresponding":false,"raw_author_name":"Ana M. Aransay","raw_affiliation_strings":["Functional Genomics Unit, CIC bioGUNE, CIBERehd, Technology Park of Bizkaia, 48160 Derio, Bizkaia, Spain,2Institute for Bioinformatics and Systems Biology, German Research Center for Environmental Health, Ingolst\u00e4dter Landstrasse 1, D-85764 Neuherberg,3Department of Genome-Oriented Bioinformatics, Wissenschaftszentrum Weihenstephan, Technische Universitat M\u00fcnchen, 85350 Freising,4Bioinformatics Group, Department of Computer Science, University of Leipzig, Haertelstr. 16-18, D-04107 Leipzig, Germany and 5Metabolomics Unit, CIC bioGUNE, CIBERehd, Technology Park of Bizkaia, 48160 Derio, Bizkaia, Spain","Technical University of Munich, Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Functional Genomics Unit, CIC bioGUNE, CIBERehd, Technology Park of Bizkaia, 48160 Derio, Bizkaia, Spain,2Institute for Bioinformatics and Systems Biology, German Research Center for Environmental Health, Ingolst\u00e4dter Landstrasse 1, D-85764 Neuherberg,3Department of Genome-Oriented Bioinformatics, Wissenschaftszentrum Weihenstephan, Technische Universitat M\u00fcnchen, 85350 Freising,4Bioinformatics Group, Department of Computer Science, University of Leipzig, Haertelstr. 16-18, D-04107 Leipzig, Germany and 5Metabolomics Unit, CIC bioGUNE, CIBERehd, Technology Park of Bizkaia, 48160 Derio, Bizkaia, Spain","institution_ids":["https://openalex.org/I4210112728","https://openalex.org/I4210115082","https://openalex.org/I3018134672","https://openalex.org/I62916508"]},{"raw_affiliation_string":"Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5084745527"],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":10.5868,"has_fulltext":true,"cited_by_count":312,"citation_normalized_percentile":{"value":0.98562092,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"37","issue":"suppl_2","first_page":"W68","last_page":"W76"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mirbase","display_name":"MiRBase","score":0.9512107372283936},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7166562676429749},{"id":"https://openalex.org/keywords/deep-sequencing","display_name":"Deep sequencing","score":0.6239597201347351},{"id":"https://openalex.org/keywords/small-rna","display_name":"Small RNA","score":0.6079543828964233},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.576184093952179},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.5755218267440796},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.5721752047538757},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5440231561660767},{"id":"https://openalex.org/keywords/sequence-analysis","display_name":"Sequence analysis","score":0.44766002893447876},{"id":"https://openalex.org/keywords/precision-and-recall","display_name":"Precision and recall","score":0.41272294521331787},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3736867606639862},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.33694037795066833},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.27853137254714966},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.18827354907989502},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.1868266463279724},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.16495129466056824},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.16445761919021606},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.13465261459350586}],"concepts":[{"id":"https://openalex.org/C49305753","wikidata":"https://www.wikidata.org/wiki/Q6826947","display_name":"MiRBase","level":4,"score":0.9512107372283936},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7166562676429749},{"id":"https://openalex.org/C132917006","wikidata":"https://www.wikidata.org/wiki/Q5250436","display_name":"Deep sequencing","level":4,"score":0.6239597201347351},{"id":"https://openalex.org/C2779341050","wikidata":"https://www.wikidata.org/wiki/Q24287527","display_name":"Small RNA","level":4,"score":0.6079543828964233},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.576184093952179},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.5755218267440796},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.5721752047538757},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5440231561660767},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.44766002893447876},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.41272294521331787},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3736867606639862},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.33694037795066833},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.27853137254714966},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.18827354907989502},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.1868266463279724},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16495129466056824},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.16445761919021606},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.13465261459350586}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004285","descriptor_name":"Dogs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004285","descriptor_name":"Dogs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004285","descriptor_name":"Dogs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkp347","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp347","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W68/16758296/gkp347.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:19433510","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19433510","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.358.5108","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.358.5108","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/2b/30/Nucleic_Acids_Res_2009_Jul_1_37(Web_Server_issue)_W68-W76.tar.gz","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.538.6166","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.538.6166","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/37/suppl_2/W68.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:opus-zb.helmholtz-muenchen.de:1746","is_oa":true,"landing_page_url":"https://push-zb.helmholtz-muenchen.de/frontdoor.php?source_opus=1746","pdf_url":null,"source":{"id":"https://openalex.org/S4377196115","display_name":"Site cant be reached","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res. 37, (Suppl.1), W68-W76 (2009)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2703919","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2703919","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkp347","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp347","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W68/16758296/gkp347.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320315493","display_name":"Department of Industry, Tourism and Trade","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2100555999.pdf","grobid_xml":"https://content.openalex.org/works/W2100555999.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W1570448133","https://openalex.org/W1920564293","https://openalex.org/W1963921985","https://openalex.org/W1976021976","https://openalex.org/W2071501400","https://openalex.org/W2083381199","https://openalex.org/W2097984977","https://openalex.org/W2103250001","https://openalex.org/W2108292745","https://openalex.org/W2114973325","https://openalex.org/W2120456037","https://openalex.org/W2124268899","https://openalex.org/W2126804125","https://openalex.org/W2130979840","https://openalex.org/W2140043368","https://openalex.org/W2147495091","https://openalex.org/W2149146453","https://openalex.org/W2151922790","https://openalex.org/W2161645441","https://openalex.org/W2165764599","https://openalex.org/W2170952313","https://openalex.org/W2409075727","https://openalex.org/W2911964244","https://openalex.org/W6680430340","https://openalex.org/W6714453948"],"related_works":["https://openalex.org/W2009658305","https://openalex.org/W2069923356","https://openalex.org/W2144674491","https://openalex.org/W3208144136","https://openalex.org/W2015017855","https://openalex.org/W2516952825","https://openalex.org/W2088415316","https://openalex.org/W2034290510","https://openalex.org/W2110733383","https://openalex.org/W1992568358"],"abstract_inverted_index":{"Next-generation":[0],"sequencing":[1,5],"allows":[2],"now":[3],"the":[4,11,30,53,141,167,181],"of":[6,13,24,33,55,73,103,113,143,150,155,180],"small":[7,59],"RNA":[8],"molecules":[9],"and":[10,76,106,152],"estimation":[12],"their":[14],"expression":[15],"levels.":[16],"Consequently,":[17],"there":[18,122],"will":[19],"be":[20],"a":[21,48,66,71,134,171,177],"high":[22],"demand":[23],"bioinformatics":[25],"tools":[26],"to":[27,157,185],"cope":[28],"with":[29,126],"several":[31],"gigabytes":[32],"sequence":[34],"data":[35],"generated":[36],"in":[37,93,170],"each":[38,191],"single":[39,172],"deep-sequencing":[40,56],"experiment.":[41],"Given":[42],"this":[43],"scene,":[44],"we":[45,132],"developed":[46],"miRanalyzer,":[47],"web":[49,62,163],"server":[50,63],"tool":[51,64,164],"for":[52,58,140,190],"analysis":[54,192],"experiments":[57],"RNAs.":[60],"The":[61,111,162],"requires":[65],"simple":[67],"input":[68],"file":[69],"containing":[70],"list":[72],"unique":[74],"reads":[75],"its":[77],"copy":[78],"numbers":[79],"(expression":[80],"levels).":[81],"Using":[82],"these":[83],"data,":[84],"miRanalyzer":[85,194],"(i)":[86],"detects":[87],"all":[88,97,166],"known":[89,129],"microRNA":[90],"sequences":[91,105],"annotated":[92],"miRBase,":[94],"(ii)":[95],"finds":[96],"perfect":[98],"matches":[99],"against":[100],"other":[101],"libraries":[102],"transcribed":[104],"(iii)":[107],"predicts":[108],"new":[109,114,144],"microRNAs.":[110,130],"prediction":[112,142],"microRNAs":[115,145],"is":[116,195],"an":[117],"especially":[118],"important":[119],"point":[120],"as":[121],"are":[123],"many":[124],"species":[125],"very":[127],"few":[128],"Therefore,":[131],"implemented":[133],"highly":[135],"accurate":[136],"machine":[137],"learning":[138],"algorithm":[139],"that":[146],"reaches":[147],"AUC":[148],"values":[149,154],"97.9%":[151],"recall":[153],"up":[156],"75%":[158],"on":[159],"unseen":[160],"data.":[161],"summarizes":[165],"described":[168],"steps":[169],"output":[173,188],"page,":[174],"which":[175],"provides":[176],"comprehensive":[178],"overview":[179],"analysis,":[182],"adding":[183],"links":[184],"more":[186],"detailed":[187],"pages":[189],"module.":[193],"available":[196],"at":[197],"http://web.bioinformatics.cicbiogune.es/microRNA/.":[198]},"counts_by_year":[{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":14},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":14},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":19},{"year":2018,"cited_by_count":11},{"year":2017,"cited_by_count":16},{"year":2016,"cited_by_count":18},{"year":2015,"cited_by_count":32},{"year":2014,"cited_by_count":27},{"year":2013,"cited_by_count":37},{"year":2012,"cited_by_count":33}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
