{"id":"https://openalex.org/W2157009395","doi":"https://doi.org/10.1093/nar/gkp335","title":"MEME SUITE: tools for motif discovery and searching","display_name":"MEME SUITE: tools for motif discovery and searching","publication_year":2009,"publication_date":"2009-05-20","ids":{"openalex":"https://openalex.org/W2157009395","doi":"https://doi.org/10.1093/nar/gkp335","mag":"2157009395","pmid":"https://pubmed.ncbi.nlm.nih.gov/19458158"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkp335","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp335","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W202/3929432/gkp335.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W202/3929432/gkp335.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017222669","display_name":"Timothy L. Bailey","orcid":"https://orcid.org/0000-0002-7018-9342"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["AU","US"],"is_corresponding":true,"raw_author_name":"T. L. Bailey","raw_affiliation_strings":["Institute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia. t.bailey@imb.uq.edu.au","Institute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia, 2Computational Biology Research Center, Institute for Advanced Industrial Science and Technology, Tokyo, Japan, 3Department of Genome Sciences, University of Washington, Seattle, Washington, 4National Biomedical Computation Resource, University of California, San Diego and 5Department of Computer Science and Engineering, University of Washington, Seattle, Washington, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia. t.bailey@imb.uq.edu.au","institution_ids":["https://openalex.org/I165143802"]},{"raw_affiliation_string":"Institute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia, 2Computational Biology Research Center, Institute for Advanced Industrial Science and Technology, Tokyo, Japan, 3Department of Genome Sciences, University of Washington, Seattle, Washington, 4National Biomedical Computation Resource, University of California, San Diego and 5Department of Computer Science and Engineering, University of Washington, Seattle, Washington, USA","institution_ids":["https://openalex.org/I165143802","https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045279138","display_name":"Mikael Bod\u00e9n","orcid":"https://orcid.org/0000-0003-3548-268X"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"M. Boden","raw_affiliation_strings":["Institute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia, 2Computational Biology Research Center, Institute for Advanced Industrial Science and Technology, Tokyo, Japan, 3Department of Genome Sciences, University of Washington, Seattle, Washington, 4National Biomedical Computation Resource, University of California, San Diego and 5Department of Computer Science and Engineering, University of Washington, Seattle, Washington, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia, 2Computational Biology Research Center, Institute for Advanced Industrial Science and Technology, Tokyo, Japan, 3Department of Genome Sciences, University of Washington, Seattle, Washington, 4National Biomedical Computation Resource, University of California, San Diego and 5Department of Computer Science and Engineering, University of Washington, Seattle, Washington, USA","institution_ids":["https://openalex.org/I165143802","https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075164642","display_name":"Fabian A. Buske","orcid":null},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"F. A. Buske","raw_affiliation_strings":["Institute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia, 2Computational Biology Research Center, Institute for Advanced Industrial Science and Technology, Tokyo, Japan, 3Department of Genome Sciences, University of Washington, Seattle, Washington, 4National Biomedical Computation Resource, University of California, San Diego and 5Department of Computer Science and Engineering, University of Washington, Seattle, Washington, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia, 2Computational Biology Research Center, Institute for Advanced Industrial Science and Technology, Tokyo, Japan, 3Department of Genome Sciences, University of Washington, Seattle, Washington, 4National Biomedical Computation Resource, University of California, San Diego and 5Department of Computer Science and Engineering, University of Washington, Seattle, Washington, USA","institution_ids":["https://openalex.org/I165143802","https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055829507","display_name":"Martin C. Frith","orcid":"https://orcid.org/0000-0003-0998-2859"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"M. Frith","raw_affiliation_strings":["Institute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia, 2Computational Biology Research Center, Institute for Advanced Industrial Science and Technology, Tokyo, Japan, 3Department of Genome Sciences, University of Washington, Seattle, Washington, 4National Biomedical Computation Resource, University of California, San Diego and 5Department of Computer Science and Engineering, University of Washington, Seattle, Washington, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia, 2Computational Biology Research Center, Institute for Advanced Industrial Science and Technology, Tokyo, Japan, 3Department of Genome Sciences, University of Washington, Seattle, Washington, 4National Biomedical Computation Resource, University of California, San Diego and 5Department of Computer Science and Engineering, University of Washington, Seattle, Washington, USA","institution_ids":["https://openalex.org/I165143802","https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112711469","display_name":"Charles E. Grant","orcid":null},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"C. E. Grant","raw_affiliation_strings":["Institute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia, 2Computational Biology Research Center, Institute for Advanced Industrial Science and Technology, Tokyo, Japan, 3Department of Genome Sciences, University of Washington, Seattle, Washington, 4National Biomedical Computation Resource, University of California, San Diego and 5Department of Computer Science and Engineering, University of Washington, Seattle, Washington, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia, 2Computational Biology Research Center, Institute for Advanced Industrial Science and Technology, Tokyo, Japan, 3Department of Genome Sciences, University of Washington, Seattle, Washington, 4National Biomedical Computation Resource, University of California, San Diego and 5Department of Computer Science and Engineering, University of Washington, Seattle, Washington, USA","institution_ids":["https://openalex.org/I165143802","https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088464058","display_name":"Luca Clementi","orcid":null},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"L. Clementi","raw_affiliation_strings":["Institute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia, 2Computational Biology Research Center, Institute for Advanced Industrial Science and Technology, Tokyo, Japan, 3Department of Genome Sciences, University of Washington, Seattle, Washington, 4National Biomedical Computation Resource, University of California, San Diego and 5Department of Computer Science and Engineering, University of Washington, Seattle, Washington, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia, 2Computational Biology Research Center, Institute for Advanced Industrial Science and Technology, Tokyo, Japan, 3Department of Genome Sciences, University of Washington, Seattle, Washington, 4National Biomedical Computation Resource, University of California, San Diego and 5Department of Computer Science and Engineering, University of Washington, Seattle, Washington, USA","institution_ids":["https://openalex.org/I165143802","https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060018416","display_name":"Junxiao Ren","orcid":"https://orcid.org/0000-0003-4203-1289"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"J. Ren","raw_affiliation_strings":["Institute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia, 2Computational Biology Research Center, Institute for Advanced Industrial Science and Technology, Tokyo, Japan, 3Department of Genome Sciences, University of Washington, Seattle, Washington, 4National Biomedical Computation Resource, University of California, San Diego and 5Department of Computer Science and Engineering, University of Washington, Seattle, Washington, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia, 2Computational Biology Research Center, Institute for Advanced Industrial Science and Technology, Tokyo, Japan, 3Department of Genome Sciences, University of Washington, Seattle, Washington, 4National Biomedical Computation Resource, University of California, San Diego and 5Department of Computer Science and Engineering, University of Washington, Seattle, Washington, USA","institution_ids":["https://openalex.org/I165143802","https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101784031","display_name":"Wen\u2010Wu Li","orcid":"https://orcid.org/0000-0002-3706-6068"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"W. W. Li","raw_affiliation_strings":["Institute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia, 2Computational Biology Research Center, Institute for Advanced Industrial Science and Technology, Tokyo, Japan, 3Department of Genome Sciences, University of Washington, Seattle, Washington, 4National Biomedical Computation Resource, University of California, San Diego and 5Department of Computer Science and Engineering, University of Washington, Seattle, Washington, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia, 2Computational Biology Research Center, Institute for Advanced Industrial Science and Technology, Tokyo, Japan, 3Department of Genome Sciences, University of Washington, Seattle, Washington, 4National Biomedical Computation Resource, University of California, San Diego and 5Department of Computer Science and Engineering, University of Washington, Seattle, Washington, USA","institution_ids":["https://openalex.org/I165143802","https://openalex.org/I201448701"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057375933","display_name":"William Stafford Noble","orcid":"https://orcid.org/0000-0001-7283-4715"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["AU","US"],"is_corresponding":true,"raw_author_name":"W. S. Noble","raw_affiliation_strings":["Institute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia, 2Computational Biology Research Center, Institute for Advanced Industrial Science and Technology, Tokyo, Japan, 3Department of Genome Sciences, University of Washington, Seattle, Washington, 4National Biomedical Computation Resource, University of California, San Diego and 5Department of Computer Science and Engineering, University of Washington, Seattle, Washington, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia, 2Computational Biology Research Center, Institute for Advanced Industrial Science and Technology, Tokyo, Japan, 3Department of Genome Sciences, University of Washington, Seattle, Washington, 4National Biomedical Computation Resource, University of California, San Diego and 5Department of Computer Science and Engineering, University of Washington, Seattle, Washington, USA","institution_ids":["https://openalex.org/I165143802","https://openalex.org/I201448701"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5017222669","https://openalex.org/A5057375933"],"corresponding_institution_ids":["https://openalex.org/I165143802","https://openalex.org/I201448701"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":43.5325,"has_fulltext":false,"cited_by_count":11432,"citation_normalized_percentile":{"value":0.99932893,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"37","issue":"Web Server","first_page":"W202","last_page":"W208"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.775347113609314},{"id":"https://openalex.org/keywords/sequence-motif","display_name":"Sequence motif","score":0.7505145072937012},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6400221586227417},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5332218408584595},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5186797380447388},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.502661943435669},{"id":"https://openalex.org/keywords/structural-motif","display_name":"Structural motif","score":0.46634429693222046},{"id":"https://openalex.org/keywords/sequence-analysis","display_name":"Sequence analysis","score":0.4228874742984772},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3711279630661011},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3227473497390747},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.30750828981399536},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.27946120500564575},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.25815334916114807}],"concepts":[{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.775347113609314},{"id":"https://openalex.org/C117745874","wikidata":"https://www.wikidata.org/wiki/Q901612","display_name":"Sequence motif","level":3,"score":0.7505145072937012},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6400221586227417},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5332218408584595},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5186797380447388},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.502661943435669},{"id":"https://openalex.org/C132677234","wikidata":"https://www.wikidata.org/wiki/Q3273544","display_name":"Structural motif","level":2,"score":0.46634429693222046},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.4228874742984772},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3711279630661011},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3227473497390747},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.30750828981399536},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.27946120500564575},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.25815334916114807},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkp335","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp335","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W202/3929432/gkp335.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:19458158","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19458158","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:espace.library.uq.edu.au:UQ:180403","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402388","display_name":"Queensland's institutional digital repository (The University of Queensland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165143802","host_organization_name":"The University of Queensland","host_organization_lineage":["https://openalex.org/I165143802"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2703892","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2703892","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkp335","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp335","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W202/3929432/gkp335.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.4399999976158142}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W53358176","https://openalex.org/W1592870802","https://openalex.org/W1644724366","https://openalex.org/W1970635361","https://openalex.org/W2006862718","https://openalex.org/W2050284387","https://openalex.org/W2052711770","https://openalex.org/W2103777723","https://openalex.org/W2105381419","https://openalex.org/W2113745093","https://openalex.org/W2131510173","https://openalex.org/W2145091349","https://openalex.org/W2149566602","https://openalex.org/W2155741020","https://openalex.org/W2409747527"],"related_works":["https://openalex.org/W2073661767","https://openalex.org/W2143211236","https://openalex.org/W2380185347","https://openalex.org/W2368410102","https://openalex.org/W2044328609","https://openalex.org/W2370034659","https://openalex.org/W2012993128","https://openalex.org/W2103777723","https://openalex.org/W3021477453","https://openalex.org/W2610941444"],"abstract_inverted_index":{"The":[0,28],"MEME":[1,30,66,118],"Suite":[2],"web":[3,183,192],"server":[4,193],"provides":[5],"a":[6,191],"unified":[7],"portal":[8],"for":[9,62,101,124,154,162,168,197],"online":[10],"discovery":[11,32,43],"and":[12,24,53,58,67,142,149,167,190],"analysis":[13,164],"of":[14,44,175],"sequence":[15,49,60,122,141],"motifs":[16,45,63,71,81,96,134],"representing":[17],"features":[18],"such":[19],"as":[20,128,130,182],"DNA":[21,57],"binding":[22],"sites":[23],"protein":[25,59],"interaction":[26],"domains.":[27],"popular":[29,84],"motif":[31,85,89,143],"algorithm":[33,40,92],"is":[34],"now":[35,120,180],"complemented":[36],"by":[37,65,104],"the":[38,88,112,140,176],"GLAM2":[39,157,170],"which":[41],"allows":[42],"containing":[46],"gaps.":[47],"Three":[48],"scanning":[50,55,91,145],"algorithms--MAST,":[51],"FIMO":[52,148],"GLAM2SCAN--allow":[54],"numerous":[56],"databases":[61,86],"discovered":[64,74,126],"GLAM2.":[68],"Transcription":[69,94],"factor":[70,95],"(including":[72],"those":[73],"using":[75,87,111,165],"MEME)":[76],"can":[77,97],"be":[78,98,136],"compared":[79],"with":[80,106,171],"in":[82],"many":[83],"database":[90,144],"TOMTOM.":[93],"further":[99,155,163],"analyzed":[100],"putative":[102],"function":[103],"association":[105,115],"Gene":[107],"Ontology":[108],"(GO)":[109],"terms":[110],"motif-GO":[113],"term":[114],"tool":[116],"GOMO.":[117],"output":[119,158],"contains":[121,160],"LOGOS":[123],"each":[125],"motif,":[127],"well":[129],"buttons":[131,161],"to":[132,135,139,152],"allow":[133],"conveniently":[137],"submitted":[138],"algorithms":[146],"(MAST,":[147],"TOMTOM),":[150],"or":[151],"GOMO,":[153],"analysis.":[156],"similarly":[159],"GLAM2SCAN":[166],"rerunning":[169],"different":[172],"parameters.":[173],"All":[174],"motif-based":[177],"tools":[178],"are":[179,194],"implemented":[181],"services":[184],"via":[185],"Opal.":[186],"Source":[187],"code,":[188],"binaries":[189],"freely":[195],"available":[196],"noncommercial":[198],"use":[199],"at":[200],"http://meme.nbcr.net.":[201]},"counts_by_year":[{"year":2026,"cited_by_count":321},{"year":2025,"cited_by_count":914},{"year":2024,"cited_by_count":1077},{"year":2023,"cited_by_count":1131},{"year":2022,"cited_by_count":1278},{"year":2021,"cited_by_count":1621},{"year":2020,"cited_by_count":1181},{"year":2019,"cited_by_count":792},{"year":2018,"cited_by_count":675},{"year":2017,"cited_by_count":525},{"year":2016,"cited_by_count":467},{"year":2015,"cited_by_count":455},{"year":2014,"cited_by_count":377},{"year":2013,"cited_by_count":296},{"year":2012,"cited_by_count":182}],"updated_date":"2026-06-07T08:38:57.713557","created_date":"2025-10-10T00:00:00"}