{"id":"https://openalex.org/W2000243542","doi":"https://doi.org/10.1093/nar/gkp309","title":"PPISearch: a web server for searching homologous protein\u2013protein interactions across multiple species","display_name":"PPISearch: a web server for searching homologous protein\u2013protein interactions across multiple species","publication_year":2009,"publication_date":"2009-05-05","ids":{"openalex":"https://openalex.org/W2000243542","doi":"https://doi.org/10.1093/nar/gkp309","mag":"2000243542","pmid":"https://pubmed.ncbi.nlm.nih.gov/19417070"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkp309","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp309","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W369/16757828/gkp309.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W369/16757828/gkp309.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009164236","display_name":"Chun Chen Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chun-Chen Chen","raw_affiliation_strings":["Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu, 30050, Taiwan","Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu 30050, Taiwan#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu, 30050, Taiwan","institution_ids":["https://openalex.org/I148366613"]},{"raw_affiliation_string":"Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu 30050, Taiwan#TAB#","institution_ids":["https://openalex.org/I148366613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023781877","display_name":"Chun\u2010Yu Lin","orcid":"https://orcid.org/0000-0003-2901-2681"},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chun-Yu Lin","raw_affiliation_strings":["Institute of Bioinformatics and Systems Biology, 2 Department of Biological Science and Technology and 3 Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsinchu, 30050, Taiwan","Institute of Bioinformatics and Systems Biology, 2Department of Biological Science and Technology and 3Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsinchu, 30050, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics and Systems Biology, 2 Department of Biological Science and Technology and 3 Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsinchu, 30050, Taiwan","institution_ids":["https://openalex.org/I148366613"]},{"raw_affiliation_string":"Institute of Bioinformatics and Systems Biology, 2Department of Biological Science and Technology and 3Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsinchu, 30050, Taiwan","institution_ids":["https://openalex.org/I148366613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111955456","display_name":"Yu-Shu Lo","orcid":null},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yu-Shu Lo","raw_affiliation_strings":["Institute of Bioinformatics and Systems Biology, 2 Department of Biological Science and Technology and 3 Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsinchu, 30050, Taiwan","National Yang Ming Chiao Tung University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics and Systems Biology, 2 Department of Biological Science and Technology and 3 Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsinchu, 30050, Taiwan","institution_ids":["https://openalex.org/I148366613"]},{"raw_affiliation_string":"National Yang Ming Chiao Tung University","institution_ids":["https://openalex.org/I148366613"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088590993","display_name":"Jinn\u2010Moon Yang","orcid":"https://orcid.org/0000-0002-3205-4391"},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Jinn-Moon Yang","raw_affiliation_strings":["Institute of Bioinformatics and Systems Biology, 2 Department of Biological Science and Technology and 3 Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsinchu, 30050, Taiwan","Institute of Bioinformatics and Systems Biology, 2Department of Biological Science and Technology and 3Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsinchu, 30050, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics and Systems Biology, 2 Department of Biological Science and Technology and 3 Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsinchu, 30050, Taiwan","institution_ids":["https://openalex.org/I148366613"]},{"raw_affiliation_string":"Institute of Bioinformatics and Systems Biology, 2Department of Biological Science and Technology and 3Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsinchu, 30050, Taiwan","institution_ids":["https://openalex.org/I148366613"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5088590993"],"corresponding_institution_ids":["https://openalex.org/I148366613"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.3501,"has_fulltext":false,"cited_by_count":38,"citation_normalized_percentile":{"value":0.79286741,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"37","issue":"suppl_2","first_page":"W369","last_page":"W375"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.97079998254776,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.7601872682571411},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.64960116147995},{"id":"https://openalex.org/keywords/protein-superfamily","display_name":"Protein superfamily","score":0.6252827644348145},{"id":"https://openalex.org/keywords/homologous-chromosome","display_name":"Homologous chromosome","score":0.5913552641868591},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5498485565185547},{"id":"https://openalex.org/keywords/transferability","display_name":"Transferability","score":0.5420907139778137},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5168919563293457},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.47973814606666565},{"id":"https://openalex.org/keywords/protein-domain","display_name":"Protein domain","score":0.45726948976516724},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3870813250541687},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3560512363910675},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3425324559211731},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.33867108821868896},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.32832393050193787},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.12862259149551392},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.07998788356781006}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.7601872682571411},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.64960116147995},{"id":"https://openalex.org/C178180057","wikidata":"https://www.wikidata.org/wiki/Q7251477","display_name":"Protein superfamily","level":3,"score":0.6252827644348145},{"id":"https://openalex.org/C64894306","wikidata":"https://www.wikidata.org/wiki/Q849622","display_name":"Homologous chromosome","level":3,"score":0.5913552641868591},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5498485565185547},{"id":"https://openalex.org/C61272859","wikidata":"https://www.wikidata.org/wiki/Q7834031","display_name":"Transferability","level":3,"score":0.5420907139778137},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5168919563293457},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.47973814606666565},{"id":"https://openalex.org/C144292202","wikidata":"https://www.wikidata.org/wiki/Q898273","display_name":"Protein domain","level":3,"score":0.45726948976516724},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3870813250541687},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3560512363910675},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3425324559211731},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.33867108821868896},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.32832393050193787},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.12862259149551392},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.07998788356781006},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.0},{"id":"https://openalex.org/C140331021","wikidata":"https://www.wikidata.org/wiki/Q1868104","display_name":"Logit","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D029742","descriptor_name":"Caenorhabditis elegans Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D029742","descriptor_name":"Caenorhabditis elegans Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D029742","descriptor_name":"Caenorhabditis elegans Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033961","descriptor_name":"Adaptor Protein Complex 1","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D033961","descriptor_name":"Adaptor Protein Complex 1","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D033961","descriptor_name":"Adaptor Protein Complex 1","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkp309","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp309","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W369/16757828/gkp309.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:19417070","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19417070","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2703927","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2703927","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkp309","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp309","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W369/16757828/gkp309.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6899999976158142,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320323443","display_name":"National Chiao Tung University","ror":"https://ror.org/00se2k293"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2000243542.pdf"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1918391659","https://openalex.org/W1972665490","https://openalex.org/W1978876322","https://openalex.org/W1979107927","https://openalex.org/W2001457899","https://openalex.org/W2019017938","https://openalex.org/W2026353653","https://openalex.org/W2037442572","https://openalex.org/W2051990160","https://openalex.org/W2057885377","https://openalex.org/W2097698606","https://openalex.org/W2103017472","https://openalex.org/W2116423958","https://openalex.org/W2123501554","https://openalex.org/W2124463526","https://openalex.org/W2125725297","https://openalex.org/W2130687290","https://openalex.org/W2141885858","https://openalex.org/W2148351021","https://openalex.org/W2158559404","https://openalex.org/W2163485494","https://openalex.org/W2164813401","https://openalex.org/W4210323379","https://openalex.org/W4252706339"],"related_works":["https://openalex.org/W2803753687","https://openalex.org/W2938939101","https://openalex.org/W2793278779","https://openalex.org/W2087903152","https://openalex.org/W1993982100","https://openalex.org/W2184530323","https://openalex.org/W2157190239","https://openalex.org/W2139271731","https://openalex.org/W2050908913","https://openalex.org/W2086130370"],"abstract_inverted_index":{"As":[0],"an":[1,81],"increasing":[2],"number":[3],"of":[4,18,34,55,60,72,95,106,162,182],"reliable":[5],"protein-protein":[6],"interactions":[7],"(PPIs)":[8],"become":[9],"available":[10,214],"and":[11,27,52,58,118,147,150,169,179,204],"high-throughput":[12],"experimental":[13],"methods":[14,29],"provide":[15],"systematic":[16],"identification":[17],"PPIs,":[19],"there":[20],"is":[21,40,92,172,186,213],"a":[22,35,41,61,93],"growing":[23],"need":[24],"for":[25,30,200],"fast":[26],"accurate":[28],"discovering":[31],"homologous":[32,47,70,101,107,134,167,202],"PPIs":[33,48,83,87,102,135,168,203],"newly":[36],"determined":[37,100],"PPI.":[38],"PPISearch":[39,195,211],"web":[42],"server":[43,66,196,212],"that":[44,159],"rapidly":[45],"identifies":[46,68],"(called":[49],"PPI":[50,177,192,205],"family)":[51],"infers":[53,141],"transferability":[54,161,181],"interacting":[56],"domains":[57],"functions":[59],"query":[62,170],"protein":[63,104,111],"pair.":[64],"This":[65],"first":[67],"two":[69],"families":[71,108,206],"the":[73,115,130,142,160,180,216],"query,":[74],"respectively,":[75],"by":[76],"using":[77,174],"BLASTP":[78],"to":[79],"scan":[80],"annotated":[82,116],"database":[84,117],"(290":[85],"137":[86],"in":[88,114],"576":[89],"species),":[90],"which":[91],"collection":[94],"five":[96],"public":[97],"databases.":[98],"We":[99],"from":[103],"pairs":[105,112,145,152,165,171,185],"when":[109],"these":[110,133],"were":[113],"have":[119],"significant":[120],"joint":[121],"sequence":[122],"similarity":[123],"(E":[124],"<":[125],"or":[126],"=":[127],"10(-40))":[128],"with":[129],"query.":[131],"Using":[132],"across":[136,207],"multiple":[137,208],"species,":[138],"this":[139],"sever":[140],"conserved":[143,163,183],"domain-domain":[144,164],"(Pfam":[146],"InterPro":[148],"domains)":[149],"function":[151,184],"(Gene":[153],"Ontology":[154],"annotations).":[155],"Our":[156],"results":[157],"demonstrate":[158],"between":[166],"88%":[173],"103":[175],"762":[176],"queries,":[178],"69%":[187],"based":[188],"on":[189],"106":[190],"997":[191],"queries.":[193],"The":[194,210],"should":[197],"be":[198],"useful":[199],"searching":[201],"species.":[209],"through":[215],"website":[217],"at":[218],"http://gemdock.life.nctu.edu.tw/ppisearch/.":[219]},"counts_by_year":[{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":3},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":5}],"updated_date":"2026-06-15T08:34:33.830935","created_date":"2025-10-10T00:00:00"}
