{"id":"https://openalex.org/W2000243542","doi":"https://doi.org/10.1093/nar/gkp309","title":"PPISearch: a web server for searching homologous protein\u2013protein interactions across multiple species","display_name":"PPISearch: a web server for searching homologous protein\u2013protein interactions across multiple species","publication_year":2009,"publication_date":"2009-05-05","ids":{"openalex":"https://openalex.org/W2000243542","doi":"https://doi.org/10.1093/nar/gkp309","mag":"2000243542","pmid":"https://pubmed.ncbi.nlm.nih.gov/19417070"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkp309","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp309","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W369/16757828/gkp309.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W369/16757828/gkp309.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009164236","display_name":"Chun Chen Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chun-Chen Chen","raw_affiliation_strings":["Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu, 30050, Taiwan","Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu 30050, Taiwan#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu, 30050, Taiwan","institution_ids":["https://openalex.org/I148366613"]},{"raw_affiliation_string":"Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu 30050, Taiwan#TAB#","institution_ids":["https://openalex.org/I148366613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023781877","display_name":"Chun\u2010Yu Lin","orcid":"https://orcid.org/0000-0003-2901-2681"},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chun-Yu Lin","raw_affiliation_strings":["Institute of Bioinformatics and Systems Biology, 2Department of Biological Science and Technology and 3Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsinchu, 30050, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics and Systems Biology, 2Department of Biological Science and Technology and 3Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsinchu, 30050, Taiwan","institution_ids":["https://openalex.org/I148366613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111955456","display_name":"Yu-Shu Lo","orcid":null},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yu-Shu Lo","raw_affiliation_strings":["Institute of Bioinformatics and Systems Biology, 2Department of Biological Science and Technology and 3Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsinchu, 30050, Taiwan","National Yang Ming Chiao Tung University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics and Systems Biology, 2Department of Biological Science and Technology and 3Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsinchu, 30050, Taiwan","institution_ids":["https://openalex.org/I148366613"]},{"raw_affiliation_string":"National Yang Ming Chiao Tung University","institution_ids":["https://openalex.org/I148366613"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088590993","display_name":"Jinn\u2010Moon Yang","orcid":"https://orcid.org/0000-0002-3205-4391"},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Jinn-Moon Yang","raw_affiliation_strings":["Institute of Bioinformatics and Systems Biology, 2Department of Biological Science and Technology and 3Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsinchu, 30050, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics and Systems Biology, 2Department of Biological Science and Technology and 3Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsinchu, 30050, Taiwan","institution_ids":["https://openalex.org/I148366613"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.3693,"has_fulltext":false,"cited_by_count":38,"citation_normalized_percentile":{"value":0.79576524,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"37","issue":"suppl_2","first_page":"W369","last_page":"W375"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.97079998254776,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.7601872682571411},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.64960116147995},{"id":"https://openalex.org/keywords/protein-superfamily","display_name":"Protein superfamily","score":0.6252827644348145},{"id":"https://openalex.org/keywords/homologous-chromosome","display_name":"Homologous chromosome","score":0.5913552641868591},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5498485565185547},{"id":"https://openalex.org/keywords/transferability","display_name":"Transferability","score":0.5420907139778137},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5168919563293457},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.47973814606666565},{"id":"https://openalex.org/keywords/protein-domain","display_name":"Protein domain","score":0.45726948976516724},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3870813250541687},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3560512363910675},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3425324559211731},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.33867108821868896},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.32832393050193787},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.12862259149551392},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.07998788356781006}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.7601872682571411},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.64960116147995},{"id":"https://openalex.org/C178180057","wikidata":"https://www.wikidata.org/wiki/Q7251477","display_name":"Protein superfamily","level":3,"score":0.6252827644348145},{"id":"https://openalex.org/C64894306","wikidata":"https://www.wikidata.org/wiki/Q849622","display_name":"Homologous chromosome","level":3,"score":0.5913552641868591},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5498485565185547},{"id":"https://openalex.org/C61272859","wikidata":"https://www.wikidata.org/wiki/Q7834031","display_name":"Transferability","level":3,"score":0.5420907139778137},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5168919563293457},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.47973814606666565},{"id":"https://openalex.org/C144292202","wikidata":"https://www.wikidata.org/wiki/Q898273","display_name":"Protein domain","level":3,"score":0.45726948976516724},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3870813250541687},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3560512363910675},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3425324559211731},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.33867108821868896},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.32832393050193787},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.12862259149551392},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.07998788356781006},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.0},{"id":"https://openalex.org/C140331021","wikidata":"https://www.wikidata.org/wiki/Q1868104","display_name":"Logit","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D029742","descriptor_name":"Caenorhabditis elegans Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D029742","descriptor_name":"Caenorhabditis elegans Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D029742","descriptor_name":"Caenorhabditis elegans Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033961","descriptor_name":"Adaptor Protein Complex 1","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D033961","descriptor_name":"Adaptor Protein Complex 1","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D033961","descriptor_name":"Adaptor Protein Complex 1","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkp309","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp309","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W369/16757828/gkp309.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:19417070","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19417070","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2703927","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2703927","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkp309","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp309","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W369/16757828/gkp309.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","score":0.6899999976158142,"id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320323443","display_name":"National Chiao Tung University","ror":"https://ror.org/00se2k293"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2000243542.pdf"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1918391659","https://openalex.org/W1972665490","https://openalex.org/W1978876322","https://openalex.org/W1979107927","https://openalex.org/W2001457899","https://openalex.org/W2019017938","https://openalex.org/W2026353653","https://openalex.org/W2037442572","https://openalex.org/W2051990160","https://openalex.org/W2057885377","https://openalex.org/W2097698606","https://openalex.org/W2103017472","https://openalex.org/W2116423958","https://openalex.org/W2123501554","https://openalex.org/W2124463526","https://openalex.org/W2125725297","https://openalex.org/W2130687290","https://openalex.org/W2141885858","https://openalex.org/W2148351021","https://openalex.org/W2158559404","https://openalex.org/W2163485494","https://openalex.org/W2164813401","https://openalex.org/W4210323379","https://openalex.org/W4252706339"],"related_works":["https://openalex.org/W2803753687","https://openalex.org/W2938939101","https://openalex.org/W2793278779","https://openalex.org/W2087903152","https://openalex.org/W1993982100","https://openalex.org/W2184530323","https://openalex.org/W2157190239","https://openalex.org/W2139271731","https://openalex.org/W2050908913","https://openalex.org/W2086130370"],"abstract_inverted_index":{"As":[0],"an":[1,81],"increasing":[2],"number":[3],"of":[4,18,34,55,60,72,95,106,162,182],"reliable":[5],"protein-protein":[6],"interactions":[7],"(PPIs)":[8],"become":[9],"available":[10,214],"and":[11,27,52,58,118,147,150,169,179,204],"high-throughput":[12],"experimental":[13],"methods":[14,29],"provide":[15],"systematic":[16],"identification":[17],"PPIs,":[19],"there":[20],"is":[21,40,92,172,186,213],"a":[22,35,41,61,93],"growing":[23],"need":[24],"for":[25,30,200],"fast":[26],"accurate":[28],"discovering":[31],"homologous":[32,47,70,101,107,134,167,202],"PPIs":[33,48,83,87,102,135,168,203],"newly":[36],"determined":[37,100],"PPI.":[38],"PPISearch":[39,195,211],"web":[42],"server":[43,66,196,212],"that":[44,159],"rapidly":[45],"identifies":[46,68],"(called":[49],"PPI":[50,177,192,205],"family)":[51],"infers":[53,141],"transferability":[54,161,181],"interacting":[56],"domains":[57],"functions":[59],"query":[62,170],"protein":[63,104,111],"pair.":[64],"This":[65],"first":[67],"two":[69],"families":[71,108,206],"the":[73,115,130,142,160,180,216],"query,":[74],"respectively,":[75],"by":[76],"using":[77,174],"BLASTP":[78],"to":[79],"scan":[80],"annotated":[82,116],"database":[84,117],"(290":[85],"137":[86],"in":[88,114],"576":[89],"species),":[90],"which":[91],"collection":[94],"five":[96],"public":[97],"databases.":[98],"We":[99],"from":[103],"pairs":[105,112,145,152,165,171,185],"when":[109],"these":[110,133],"were":[113],"have":[119],"significant":[120],"joint":[121],"sequence":[122],"similarity":[123],"(E":[124],"<":[125],"or":[126],"=":[127],"10(-40))":[128],"with":[129],"query.":[131],"Using":[132],"across":[136,207],"multiple":[137,208],"species,":[138],"this":[139],"sever":[140],"conserved":[143,163,183],"domain-domain":[144,164],"(Pfam":[146],"InterPro":[148],"domains)":[149],"function":[151,184],"(Gene":[153],"Ontology":[154],"annotations).":[155],"Our":[156],"results":[157],"demonstrate":[158],"between":[166],"88%":[173],"103":[175],"762":[176],"queries,":[178],"69%":[187],"based":[188],"on":[189],"106":[190],"997":[191],"queries.":[193],"The":[194,210],"should":[197],"be":[198],"useful":[199],"searching":[201],"species.":[209],"through":[215],"website":[217],"at":[218],"http://gemdock.life.nctu.edu.tw/ppisearch/.":[219]},"counts_by_year":[{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":3},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":5}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
