{"id":"https://openalex.org/W2117813757","doi":"https://doi.org/10.1093/nar/gkp254","title":"ANNIE: integrated de novo protein sequence annotation","display_name":"ANNIE: integrated de novo protein sequence annotation","publication_year":2009,"publication_date":"2009-04-23","ids":{"openalex":"https://openalex.org/W2117813757","doi":"https://doi.org/10.1093/nar/gkp254","mag":"2117813757","pmid":"https://pubmed.ncbi.nlm.nih.gov/19389726"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkp254","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp254","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W435/3905788/gkp254.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W435/3905788/gkp254.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011591971","display_name":"Hong-Sain Ooi","orcid":null},"institutions":[{"id":"https://openalex.org/I195525897","display_name":"Research Institute of Molecular Pathology","ror":"https://ror.org/02c5jsm26","country_code":"AT","type":"facility","lineage":["https://openalex.org/I195525897"]}],"countries":["AT"],"is_corresponding":true,"raw_author_name":"H. S. Ooi","raw_affiliation_strings":["Bioinformatics Institute, A*Star, Singapore","Research Institute of Molecular Pathology, Vienna, Austria"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Institute, A*Star, Singapore","institution_ids":[]},{"raw_affiliation_string":"Research Institute of Molecular Pathology, Vienna, Austria","institution_ids":["https://openalex.org/I195525897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006734329","display_name":"C. Y. Kwo","orcid":null},"institutions":[{"id":"https://openalex.org/I4210148498","display_name":"Bioinformatics Institute","ror":"https://ror.org/044w3nw43","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I4210148498"]},{"id":"https://openalex.org/I195525897","display_name":"Research Institute of Molecular Pathology","ror":"https://ror.org/02c5jsm26","country_code":"AT","type":"facility","lineage":["https://openalex.org/I195525897"]}],"countries":["AT","SG"],"is_corresponding":false,"raw_author_name":"C. Y. Kwo","raw_affiliation_strings":["Bioinformatics Institute, A  Star, Singapore,","Research Institute of Molecular Pathology, Vienna, Austria"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Institute, A  Star, Singapore,","institution_ids":["https://openalex.org/I4210148498"]},{"raw_affiliation_string":"Research Institute of Molecular Pathology, Vienna, Austria","institution_ids":["https://openalex.org/I195525897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036710699","display_name":"Michael Wildpaner","orcid":null},"institutions":[{"id":"https://openalex.org/I195525897","display_name":"Research Institute of Molecular Pathology","ror":"https://ror.org/02c5jsm26","country_code":"AT","type":"facility","lineage":["https://openalex.org/I195525897"]},{"id":"https://openalex.org/I4210100430","display_name":"Google (Switzerland)","ror":"https://ror.org/014f9c269","country_code":"CH","type":"company","lineage":["https://openalex.org/I1291425158","https://openalex.org/I4210100430","https://openalex.org/I4210128969"]}],"countries":["AT","CH"],"is_corresponding":false,"raw_author_name":"M. Wildpaner","raw_affiliation_strings":["Google Switzerland GmbH, Zuerich, Switzerland,","Research Institute of Molecular Pathology, Vienna, Austria"],"affiliations":[{"raw_affiliation_string":"Google Switzerland GmbH, Zuerich, Switzerland,","institution_ids":["https://openalex.org/I4210100430"]},{"raw_affiliation_string":"Research Institute of Molecular Pathology, Vienna, Austria","institution_ids":["https://openalex.org/I195525897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031963437","display_name":"Fernanda L. Sirota","orcid":"https://orcid.org/0000-0002-7322-4676"},"institutions":[{"id":"https://openalex.org/I195525897","display_name":"Research Institute of Molecular Pathology","ror":"https://ror.org/02c5jsm26","country_code":"AT","type":"facility","lineage":["https://openalex.org/I195525897"]},{"id":"https://openalex.org/I4210148498","display_name":"Bioinformatics Institute","ror":"https://ror.org/044w3nw43","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I4210148498"]}],"countries":["AT","SG"],"is_corresponding":false,"raw_author_name":"F. L. Sirota","raw_affiliation_strings":["Bioinformatics Institute, A  Star, Singapore,","Research Institute of Molecular Pathology, Vienna, Austria"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Institute, A  Star, Singapore,","institution_ids":["https://openalex.org/I4210148498"]},{"raw_affiliation_string":"Research Institute of Molecular Pathology, Vienna, Austria","institution_ids":["https://openalex.org/I195525897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074249721","display_name":"Birgit Eisenhaber","orcid":"https://orcid.org/0000-0002-2910-7384"},"institutions":[{"id":"https://openalex.org/I195525897","display_name":"Research Institute of Molecular Pathology","ror":"https://ror.org/02c5jsm26","country_code":"AT","type":"facility","lineage":["https://openalex.org/I195525897"]},{"id":"https://openalex.org/I4210128633","display_name":"Experimental Drug Development Centre","ror":"https://ror.org/03kx02w94","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I4210128633"]}],"countries":["AT","SG"],"is_corresponding":false,"raw_author_name":"B. Eisenhaber","raw_affiliation_strings":["Experimental Therapeutics Center, A  Star, Singapore,","Research Institute of Molecular Pathology, Vienna, Austria"],"affiliations":[{"raw_affiliation_string":"Experimental Therapeutics Center, A  Star, Singapore,","institution_ids":["https://openalex.org/I4210128633"]},{"raw_affiliation_string":"Research Institute of Molecular Pathology, Vienna, Austria","institution_ids":["https://openalex.org/I195525897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019975803","display_name":"Sebastian Maurer\u2010Stroh","orcid":"https://orcid.org/0000-0003-0813-9640"},"institutions":[{"id":"https://openalex.org/I195525897","display_name":"Research Institute of Molecular Pathology","ror":"https://ror.org/02c5jsm26","country_code":"AT","type":"facility","lineage":["https://openalex.org/I195525897"]},{"id":"https://openalex.org/I4210148498","display_name":"Bioinformatics Institute","ror":"https://ror.org/044w3nw43","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I4210148498"]}],"countries":["AT","SG"],"is_corresponding":false,"raw_author_name":"S. Maurer-Stroh","raw_affiliation_strings":["Bioinformatics Institute, A  Star, Singapore,","Research Institute of Molecular Pathology, Vienna, Austria"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Institute, A  Star, Singapore,","institution_ids":["https://openalex.org/I4210148498"]},{"raw_affiliation_string":"Research Institute of Molecular Pathology, Vienna, Austria","institution_ids":["https://openalex.org/I195525897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054172819","display_name":"Wing C. Wong","orcid":"https://orcid.org/0009-0000-9148-6816"},"institutions":[{"id":"https://openalex.org/I195525897","display_name":"Research Institute of Molecular Pathology","ror":"https://ror.org/02c5jsm26","country_code":"AT","type":"facility","lineage":["https://openalex.org/I195525897"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"W. C. Wong","raw_affiliation_strings":["Research Institute of Molecular Pathology, Vienna, Austria"],"affiliations":[{"raw_affiliation_string":"Research Institute of Molecular Pathology, Vienna, Austria","institution_ids":["https://openalex.org/I195525897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083180953","display_name":"Alexander Schleiffer","orcid":"https://orcid.org/0000-0001-6251-2747"},"institutions":[{"id":"https://openalex.org/I195525897","display_name":"Research Institute of Molecular Pathology","ror":"https://ror.org/02c5jsm26","country_code":"AT","type":"facility","lineage":["https://openalex.org/I195525897"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"A. Schleiffer","raw_affiliation_strings":["Research Institute of Molecular Pathology, Vienna, Austria and","Research Institute of Molecular Pathology, Vienna, Austria"],"affiliations":[{"raw_affiliation_string":"Research Institute of Molecular Pathology, Vienna, Austria and","institution_ids":["https://openalex.org/I195525897"]},{"raw_affiliation_string":"Research Institute of Molecular Pathology, Vienna, Austria","institution_ids":["https://openalex.org/I195525897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007579711","display_name":"Frank Eisenhaber","orcid":"https://orcid.org/0000-0002-9599-5420"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]},{"id":"https://openalex.org/I195525897","display_name":"Research Institute of Molecular Pathology","ror":"https://ror.org/02c5jsm26","country_code":"AT","type":"facility","lineage":["https://openalex.org/I195525897"]},{"id":"https://openalex.org/I4210148498","display_name":"Bioinformatics Institute","ror":"https://ror.org/044w3nw43","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I4210148498"]}],"countries":["AT","SG"],"is_corresponding":false,"raw_author_name":"F. Eisenhaber","raw_affiliation_strings":["Bioinformatics Institute, A  Star, Singapore,","Department of Biological Sciences, National University of Singapore, Singapore","Research Institute of Molecular Pathology, Vienna, Austria"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Institute, A  Star, Singapore,","institution_ids":["https://openalex.org/I4210148498"]},{"raw_affiliation_string":"Department of Biological Sciences, National University of Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]},{"raw_affiliation_string":"Research Institute of Molecular Pathology, Vienna, Austria","institution_ids":["https://openalex.org/I195525897"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044110835","display_name":"G. Schneider","orcid":"https://orcid.org/0000-0002-4485-1769"},"institutions":[{"id":"https://openalex.org/I195525897","display_name":"Research Institute of Molecular Pathology","ror":"https://ror.org/02c5jsm26","country_code":"AT","type":"facility","lineage":["https://openalex.org/I195525897"]},{"id":"https://openalex.org/I4210148498","display_name":"Bioinformatics Institute","ror":"https://ror.org/044w3nw43","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I4210148498"]}],"countries":["AT","SG"],"is_corresponding":false,"raw_author_name":"G. Schneider","raw_affiliation_strings":["Bioinformatics Institute, A  Star, Singapore,","Research Institute of Molecular Pathology, Vienna, Austria"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Institute, A  Star, Singapore,","institution_ids":["https://openalex.org/I4210148498"]},{"raw_affiliation_string":"Research Institute of Molecular Pathology, Vienna, Austria","institution_ids":["https://openalex.org/I195525897"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5011591971"],"corresponding_institution_ids":["https://openalex.org/I195525897"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.8309,"has_fulltext":true,"cited_by_count":52,"citation_normalized_percentile":{"value":0.90957305,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"37","issue":"Web Server","first_page":"W435","last_page":"W440"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7426098585128784},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.7142717838287354},{"id":"https://openalex.org/keywords/login","display_name":"Login","score":0.5904061198234558},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.589094340801239},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5746980309486389},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5226685404777527},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4811893105506897},{"id":"https://openalex.org/keywords/ajax","display_name":"Ajax","score":0.46031591296195984},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.458088755607605},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.33512750267982483},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.30941343307495117},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.23825359344482422},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.21041089296340942},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12270429730415344},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.08591297268867493}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7426098585128784},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.7142717838287354},{"id":"https://openalex.org/C113324615","wikidata":"https://www.wikidata.org/wiki/Q472302","display_name":"Login","level":2,"score":0.5904061198234558},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.589094340801239},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5746980309486389},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5226685404777527},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4811893105506897},{"id":"https://openalex.org/C504723692","wikidata":"https://www.wikidata.org/wiki/Q134471","display_name":"Ajax","level":3,"score":0.46031591296195984},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.458088755607605},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.33512750267982483},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.30941343307495117},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.23825359344482422},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.21041089296340942},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12270429730415344},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.08591297268867493},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkp254","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp254","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W435/3905788/gkp254.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:19389726","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19389726","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2703921","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2703921","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkp254","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp254","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_2/W435/3905788/gkp254.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2117813757.pdf","grobid_xml":"https://content.openalex.org/works/W2117813757.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W626692","https://openalex.org/W24553703","https://openalex.org/W292775947","https://openalex.org/W644874088","https://openalex.org/W1854397683","https://openalex.org/W1971147414","https://openalex.org/W1972918915","https://openalex.org/W1975684232","https://openalex.org/W1996351562","https://openalex.org/W1996902131","https://openalex.org/W2004484191","https://openalex.org/W2005593816","https://openalex.org/W2008116827","https://openalex.org/W2008399824","https://openalex.org/W2014443494","https://openalex.org/W2022073880","https://openalex.org/W2024645073","https://openalex.org/W2034911186","https://openalex.org/W2042269004","https://openalex.org/W2051002350","https://openalex.org/W2051119339","https://openalex.org/W2067364375","https://openalex.org/W2076724084","https://openalex.org/W2086586192","https://openalex.org/W2093370585","https://openalex.org/W2097870001","https://openalex.org/W2099182237","https://openalex.org/W2100361137","https://openalex.org/W2100494857","https://openalex.org/W2103017472","https://openalex.org/W2104412724","https://openalex.org/W2107251251","https://openalex.org/W2116423958","https://openalex.org/W2120886934","https://openalex.org/W2121023174","https://openalex.org/W2126578619","https://openalex.org/W2134484762","https://openalex.org/W2134811841","https://openalex.org/W2137653635","https://openalex.org/W2139621307","https://openalex.org/W2141452262","https://openalex.org/W2143219956","https://openalex.org/W2151831732","https://openalex.org/W2152134842","https://openalex.org/W2152517415","https://openalex.org/W2152770371","https://openalex.org/W2161199282","https://openalex.org/W2162113211","https://openalex.org/W2165482734","https://openalex.org/W2753765968","https://openalex.org/W2964646613","https://openalex.org/W4210430020","https://openalex.org/W4240231372"],"related_works":["https://openalex.org/W2385158182","https://openalex.org/W2803879063","https://openalex.org/W1977895222","https://openalex.org/W1892467659","https://openalex.org/W1529400504","https://openalex.org/W2352483421","https://openalex.org/W2357241418","https://openalex.org/W2998403542","https://openalex.org/W2808586768","https://openalex.org/W2086064646"],"abstract_inverted_index":{"Function":[0],"prediction":[1,14,74],"of":[2,11,13,20,26,47,49,63,97,101],"proteins":[3],"with":[4,16],"computational":[5,53],"sequence":[6,65,85,102,120],"analysis":[7],"requires":[8],"the":[9,45,105],"use":[10],"dozens":[12],"tools":[15,28],"a":[17,31,94],"bewildering":[18],"range":[19],"input":[21],"and":[22,34,55,58,81,88,132,137],"output":[23],"formats.":[24],"Each":[25],"these":[27],"focuses":[29],"on":[30],"narrow":[32],"aspect":[33],"researchers":[35],"are":[36,89,110],"having":[37],"difficulty":[38],"obtaining":[39],"an":[40,60,113,117],"integrated":[41,114],"picture.":[42],"ANNIE":[43,122],"is":[44,123,130,139],"result":[46],"years":[48],"close":[50],"interaction":[51],"between":[52],"biologists":[54],"computer":[56],"scientists":[57,93],"automates":[59],"essential":[61],"part":[62],"this":[64],"analytic":[66,86],"process.":[67],"It":[68],"brings":[69],"together":[70],"over":[71],"20":[72],"function":[73],"algorithms":[75],"that":[76],"have":[77],"proven":[78],"sufficiently":[79],"reliable":[80],"indispensable":[82],"in":[83,104,112],"daily":[84],"work":[87],"meant":[90],"to":[91,134],"give":[92],"quick":[95],"overview":[96],"possible":[98],"functional":[99],"assignments":[100],"segments":[103],"query":[106],"proteins.":[107],"The":[108],"results":[109],"displayed":[111],"manner":[115],"using":[116],"innovative":[118],"AJAX-based":[119],"viewer.":[121],"available":[124],"online":[125],"at:":[126],"http://annie.bii.a-star.edu.sg.":[127],"This":[128],"website":[129],"free":[131],"open":[133],"all":[135],"users":[136],"there":[138],"no":[140],"login":[141],"requirement.":[142]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":4},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":7}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
