{"id":"https://openalex.org/W2028339001","doi":"https://doi.org/10.1093/nar/gkp1004","title":"The Immune Epitope Database 2.0","display_name":"The Immune Epitope Database 2.0","publication_year":2009,"publication_date":"2009-11-10","ids":{"openalex":"https://openalex.org/W2028339001","doi":"https://doi.org/10.1093/nar/gkp1004","mag":"2028339001","pmid":"https://pubmed.ncbi.nlm.nih.gov/19906713"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkp1004","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp1004","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D854/16771013/gkp1004.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D854/16771013/gkp1004.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069243187","display_name":"Randi Vita","orcid":"https://orcid.org/0000-0001-8957-7612"},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Randi Vita","raw_affiliation_strings":["La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, USA. rvita@liai.org","La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, USA. rvita@liai.org","institution_ids":["https://openalex.org/I1311191458"]},{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I1311191458"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002661827","display_name":"Laura Zarebski","orcid":null},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Laura Zarebski","raw_affiliation_strings":["La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, 2 Science Applications International Corporation, IEDB, San Diego, CA, USA and 3 Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark","La Jolla Institute For Allergy & Immunology, San Diego, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, 2 Science Applications International Corporation, IEDB, San Diego, CA, USA and 3 Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark","institution_ids":["https://openalex.org/I1311191458"]},{"raw_affiliation_string":"La Jolla Institute For Allergy & Immunology, San Diego, United States","institution_ids":["https://openalex.org/I1311191458"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063725110","display_name":"Jason Greenbaum","orcid":"https://orcid.org/0000-0002-1381-0390"},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jason A. Greenbaum","raw_affiliation_strings":["La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, 2 Science Applications International Corporation, IEDB, San Diego, CA, USA and 3 Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark","La Jolla Institute For Allergy & Immunology, San Diego, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, 2 Science Applications International Corporation, IEDB, San Diego, CA, USA and 3 Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark","institution_ids":["https://openalex.org/I1311191458"]},{"raw_affiliation_string":"La Jolla Institute For Allergy & Immunology, San Diego, United States","institution_ids":["https://openalex.org/I1311191458"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048340582","display_name":"Hussein Emami","orcid":null},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hussein Emami","raw_affiliation_strings":["La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, 2 Science Applications International Corporation, IEDB, San Diego, CA, USA and 3 Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark","La Jolla Institute For Allergy & Immunology, San Diego, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, 2 Science Applications International Corporation, IEDB, San Diego, CA, USA and 3 Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark","institution_ids":["https://openalex.org/I1311191458"]},{"raw_affiliation_string":"La Jolla Institute For Allergy & Immunology, San Diego, United States","institution_ids":["https://openalex.org/I1311191458"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004763412","display_name":"Ilka Hoof","orcid":"https://orcid.org/0000-0003-3827-7227"},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ilka Hoof","raw_affiliation_strings":["La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, 2 Science Applications International Corporation, IEDB, San Diego, CA, USA and 3 Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark","La Jolla Institute For Allergy & Immunology, San Diego, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, 2 Science Applications International Corporation, IEDB, San Diego, CA, USA and 3 Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark","institution_ids":["https://openalex.org/I1311191458"]},{"raw_affiliation_string":"La Jolla Institute For Allergy & Immunology, San Diego, United States","institution_ids":["https://openalex.org/I1311191458"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088422039","display_name":"Nima Salimi","orcid":"https://orcid.org/0000-0002-4522-9998"},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nima Salimi","raw_affiliation_strings":["La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, 2 Science Applications International Corporation, IEDB, San Diego, CA, USA and 3 Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark","La Jolla Institute For Allergy & Immunology, San Diego, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, 2 Science Applications International Corporation, IEDB, San Diego, CA, USA and 3 Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark","institution_ids":["https://openalex.org/I1311191458"]},{"raw_affiliation_string":"La Jolla Institute For Allergy & Immunology, San Diego, United States","institution_ids":["https://openalex.org/I1311191458"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057826457","display_name":"Rohini Damle","orcid":null},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rohini Damle","raw_affiliation_strings":["La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, 2 Science Applications International Corporation, IEDB, San Diego, CA, USA and 3 Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark","La Jolla Institute For Allergy & Immunology, San Diego, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, 2 Science Applications International Corporation, IEDB, San Diego, CA, USA and 3 Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark","institution_ids":["https://openalex.org/I1311191458"]},{"raw_affiliation_string":"La Jolla Institute For Allergy & Immunology, San Diego, United States","institution_ids":["https://openalex.org/I1311191458"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010966529","display_name":"Alessandro Sette","orcid":"https://orcid.org/0000-0001-7013-2250"},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alessandro Sette","raw_affiliation_strings":["La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, 2 Science Applications International Corporation, IEDB, San Diego, CA, USA and 3 Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark","La Jolla Institute For Allergy & Immunology, San Diego, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, 2 Science Applications International Corporation, IEDB, San Diego, CA, USA and 3 Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark","institution_ids":["https://openalex.org/I1311191458"]},{"raw_affiliation_string":"La Jolla Institute For Allergy & Immunology, San Diego, United States","institution_ids":["https://openalex.org/I1311191458"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023547268","display_name":"Bjoern Peters","orcid":"https://orcid.org/0000-0002-8457-6693"},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bjoern Peters","raw_affiliation_strings":["La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, 2 Science Applications International Corporation, IEDB, San Diego, CA, USA and 3 Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark","La Jolla Institute For Allergy & Immunology, San Diego, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, 2 Science Applications International Corporation, IEDB, San Diego, CA, USA and 3 Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark","institution_ids":["https://openalex.org/I1311191458"]},{"raw_affiliation_string":"La Jolla Institute For Allergy & Immunology, San Diego, United States","institution_ids":["https://openalex.org/I1311191458"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5069243187"],"corresponding_institution_ids":["https://openalex.org/I1311191458"],"apc_list":{"value":3992,"currency":"USD","value_usd":3992},"apc_paid":{"value":3992,"currency":"USD","value_usd":3992},"fwci":19.7633,"has_fulltext":true,"cited_by_count":643,"citation_normalized_percentile":{"value":0.99677038,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"38","issue":"suppl_1","first_page":"D854","last_page":"D862"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.9497354030609131},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.831507682800293},{"id":"https://openalex.org/keywords/major-histocompatibility-complex","display_name":"Major histocompatibility complex","score":0.7433101534843445},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.5536377429962158},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4836615025997162},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.43298307061195374},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.3641499876976013},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3239523470401764},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.08155238628387451}],"concepts":[{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.9497354030609131},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.831507682800293},{"id":"https://openalex.org/C207936829","wikidata":"https://www.wikidata.org/wiki/Q423163","display_name":"Major histocompatibility complex","level":3,"score":0.7433101534843445},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.5536377429962158},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4836615025997162},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.43298307061195374},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.3641499876976013},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3239523470401764},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.08155238628387451}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007107","descriptor_name":"Immune System","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D007107","descriptor_name":"Immune System","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D007107","descriptor_name":"Immune System","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D007125","descriptor_name":"Immunogenetics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007125","descriptor_name":"Immunogenetics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007125","descriptor_name":"Immunogenetics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008285","descriptor_name":"Major Histocompatibility Complex","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008285","descriptor_name":"Major Histocompatibility Complex","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008285","descriptor_name":"Major Histocompatibility Complex","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkp1004","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp1004","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D854/16771013/gkp1004.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:19906713","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19906713","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2808938","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2808938","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:nar:38/suppl_1/D854","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/38/suppl_1/D854","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pure.atira.dk:publications/2248bbfa-5d8c-4b05-a920-b22bf0ef8b61","is_oa":true,"landing_page_url":"https://orbit.dtu.dk/en/publications/2248bbfa-5d8c-4b05-a920-b22bf0ef8b61","pdf_url":null,"source":{"id":"https://openalex.org/S4306400705","display_name":"Technical University of Denmark, DTU Orbit (Technical University of Denmark, DTU)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I96673099","host_organization_name":"Technical University of Denmark","host_organization_lineage":["https://openalex.org/I96673099"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Hoof , I , Vita , R , Zarebski , L , Greenbaum , JA , Emami , H , Salimi , N , Damle , R , Sette , A &amp; Peters , B 2010 , ' The Immune Epitope Database 2.0 ' , Nucleic Acids Research , vol. 38 , pp. 854-862 . https://doi.org/10.1093/nar/gkp1004","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkp1004","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp1004","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D854/16771013/gkp1004.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.6800000071525574,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G1150630869","display_name":null,"funder_award_id":"HHSN2662004000 0 6C","funder_id":"https://openalex.org/F4320332505","funder_display_name":"U.S. Public Health Service"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332505","display_name":"U.S. Public Health Service","ror":"https://ror.org/05xf94514"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2028339001.pdf","grobid_xml":"https://content.openalex.org/works/W2028339001.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1540550673","https://openalex.org/W1543448539","https://openalex.org/W1795576732","https://openalex.org/W1967494780","https://openalex.org/W1979874740","https://openalex.org/W2025729280","https://openalex.org/W2028147409","https://openalex.org/W2033377040","https://openalex.org/W2046060933","https://openalex.org/W2059874211","https://openalex.org/W2068945309","https://openalex.org/W2096525273","https://openalex.org/W2100785155","https://openalex.org/W2117064132","https://openalex.org/W2123229604","https://openalex.org/W2130979001","https://openalex.org/W2144264324","https://openalex.org/W2161749616","https://openalex.org/W2916936443","https://openalex.org/W4250297812"],"related_works":["https://openalex.org/W1979044599","https://openalex.org/W2021824670","https://openalex.org/W2009867644","https://openalex.org/W2363997565","https://openalex.org/W1981120125","https://openalex.org/W3036615648","https://openalex.org/W2408448169","https://openalex.org/W2182598264","https://openalex.org/W2075879923","https://openalex.org/W2060253881"],"abstract_inverted_index":{"The":[0,32,142,159,179],"Immune":[1],"Epitope":[2],"Database":[3],"(IEDB,":[4],"www.iedb.org)":[5],"provides":[6],"a":[7],"catalog":[8],"of":[9,84,102,118,144,157],"experimentally":[10],"characterized":[11],"B":[12],"and":[13,27,43,66,75,116,188],"T":[14],"cell":[15],"epitopes,":[16],"as":[17,19,182,184],"well":[18,183],"data":[20,88,125],"on":[21,107],"Major":[22],"Histocompatibility":[23],"Complex":[24],"(MHC)":[25],"binding":[26],"MHC":[28,169],"ligand":[29],"elution":[30],"experiments.":[31],"database":[33,160,180],"represents":[34],"the":[35,44,82,87,96,132,155,195],"molecular":[36],"structures":[37],"recognized":[38,58],"by":[39,140,154,164],"adaptive":[40],"immune":[41,55],"receptors":[42],"experimental":[45,77],"contexts":[46],"in":[47,59,111,121,203],"which":[48,98,199],"these":[49],"molecules":[50],"were":[51,92,137],"determined":[52],"to":[53,131,147,151],"be":[54,129,152,162],"epitopes.":[56],"Epitopes":[57],"humans,":[60],"nonhuman":[61],"primates,":[62],"rodents,":[63],"pigs,":[64],"cats":[65],"all":[67,103],"other":[68,177],"tested":[69],"species":[70],"are":[71,79],"included.":[72],"Both":[73],"positive":[74],"negative":[76],"results":[78],"captured.":[80],"Over":[81],"course":[83],"4":[85],"years,":[86],"from":[89,95,134],"180,978":[90],"experiments":[91,136],"curated":[93],"manually":[94],"literature,":[97],"covers":[99],"approximately":[100],"99%":[101],"publicly":[104,201],"available":[105,202],"information":[106],"peptide":[108],"epitopes":[109,145],"mapped":[110,120],"infectious":[112],"agents":[113],"(excluding":[114],"HIV)":[115],"93%":[117],"those":[119],"allergens.":[122],"In":[123],"addition,":[124],"that":[126],"would":[127],"otherwise":[128],"unavailable":[130],"public":[133],"129,186":[135],"submitted":[138],"directly":[139],"investigators.":[141],"curation":[143],"related":[146],"autoimmunity":[148],"is":[149],"expected":[150],"completed":[153],"end":[156],"2010.":[158],"can":[161],"queried":[163],"epitope":[165],"structure,":[166,181],"source":[167],"organism,":[168,175],"restriction,":[170],"assay":[171],"type":[172],"or":[173],"host":[174],"among":[176],"criteria.":[178],"its":[185],"querying,":[186],"browsing":[187],"reporting":[189],"interfaces,":[190],"was":[191],"completely":[192],"redesigned":[193],"for":[194],"IEDB":[196],"2.0":[197],"release,":[198],"became":[200],"early":[204],"2009.":[205]},"counts_by_year":[{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":17},{"year":2022,"cited_by_count":15},{"year":2021,"cited_by_count":22},{"year":2020,"cited_by_count":31},{"year":2019,"cited_by_count":23},{"year":2018,"cited_by_count":35},{"year":2017,"cited_by_count":29},{"year":2016,"cited_by_count":50},{"year":2015,"cited_by_count":70},{"year":2014,"cited_by_count":87},{"year":2013,"cited_by_count":90},{"year":2012,"cited_by_count":59}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
