{"id":"https://openalex.org/W2155972151","doi":"https://doi.org/10.1093/nar/gkn853","title":"EcID. A database for the inference of functional interactions in E. coli","display_name":"EcID. A database for the inference of functional interactions in E. coli","publication_year":2008,"publication_date":"2008-11-13","ids":{"openalex":"https://openalex.org/W2155972151","doi":"https://doi.org/10.1093/nar/gkn853","mag":"2155972151","pmid":"https://pubmed.ncbi.nlm.nih.gov/19004873"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkn853","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn853","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D629/3319971/gkn853.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D629/3319971/gkn853.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077523141","display_name":"Eduardo Andr\u00e9s\u2010Le\u00f3n","orcid":"https://orcid.org/0000-0002-0621-9914"},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]},{"id":"https://openalex.org/I50357001","display_name":"Universidad Carlos III de Madrid","ror":"https://ror.org/03ths8210","country_code":"ES","type":"education","lineage":["https://openalex.org/I50357001"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"E. Andres Leon","raw_affiliation_strings":["Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre-CNIO and Computer Sciences Department, Universidad Carlos III de Madrid, Spain","Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre\u2013CNIO and 2Computer Sciences Department, Universidad Carlos III de Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre-CNIO and Computer Sciences Department, Universidad Carlos III de Madrid, Spain","institution_ids":["https://openalex.org/I4210089594","https://openalex.org/I50357001"]},{"raw_affiliation_string":"Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre\u2013CNIO and 2Computer Sciences Department, Universidad Carlos III de Madrid, Spain","institution_ids":["https://openalex.org/I4210089594","https://openalex.org/I50357001"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008691880","display_name":"Iakes Ezkurdia","orcid":"https://orcid.org/0000-0001-9074-5302"},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]},{"id":"https://openalex.org/I50357001","display_name":"Universidad Carlos III de Madrid","ror":"https://ror.org/03ths8210","country_code":"ES","type":"education","lineage":["https://openalex.org/I50357001"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"I. Ezkurdia","raw_affiliation_strings":["Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre-CNIO and","Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre\u2013CNIO and 2Computer Sciences Department, Universidad Carlos III de Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre-CNIO and","institution_ids":["https://openalex.org/I4210089594"]},{"raw_affiliation_string":"Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre\u2013CNIO and 2Computer Sciences Department, Universidad Carlos III de Madrid, Spain","institution_ids":["https://openalex.org/I4210089594","https://openalex.org/I50357001"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034245473","display_name":"Beatriz Garc\u00eda-Jim\u00e9nez","orcid":"https://orcid.org/0000-0002-8129-6506"},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]},{"id":"https://openalex.org/I50357001","display_name":"Universidad Carlos III de Madrid","ror":"https://ror.org/03ths8210","country_code":"ES","type":"education","lineage":["https://openalex.org/I50357001"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"B. Garcia","raw_affiliation_strings":["Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre\u2013CNIO and 2Computer Sciences Department, Universidad Carlos III de Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre\u2013CNIO and 2Computer Sciences Department, Universidad Carlos III de Madrid, Spain","institution_ids":["https://openalex.org/I4210089594","https://openalex.org/I50357001"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015217651","display_name":"Alfonso Valencia","orcid":"https://orcid.org/0000-0002-8937-6789"},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]},{"id":"https://openalex.org/I50357001","display_name":"Universidad Carlos III de Madrid","ror":"https://ror.org/03ths8210","country_code":"ES","type":"education","lineage":["https://openalex.org/I50357001"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"A. Valencia","raw_affiliation_strings":["Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre-CNIO and","Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre\u2013CNIO and 2Computer Sciences Department, Universidad Carlos III de Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre-CNIO and","institution_ids":["https://openalex.org/I4210089594"]},{"raw_affiliation_string":"Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre\u2013CNIO and 2Computer Sciences Department, Universidad Carlos III de Madrid, Spain","institution_ids":["https://openalex.org/I4210089594","https://openalex.org/I50357001"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065184997","display_name":"David Juan","orcid":"https://orcid.org/0000-0003-1912-9667"},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]},{"id":"https://openalex.org/I50357001","display_name":"Universidad Carlos III de Madrid","ror":"https://ror.org/03ths8210","country_code":"ES","type":"education","lineage":["https://openalex.org/I50357001"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"D. Juan","raw_affiliation_strings":["Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre-CNIO and","Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre\u2013CNIO and 2Computer Sciences Department, Universidad Carlos III de Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre-CNIO and","institution_ids":["https://openalex.org/I4210089594"]},{"raw_affiliation_string":"Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre\u2013CNIO and 2Computer Sciences Department, Universidad Carlos III de Madrid, Spain","institution_ids":["https://openalex.org/I4210089594","https://openalex.org/I50357001"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.6894,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.83753177,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"37","issue":"Database","first_page":"D629","last_page":"D635"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7882261276245117},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.6527320742607117},{"id":"https://openalex.org/keywords/kegg","display_name":"KEGG","score":0.6301298141479492},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6202000379562378},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5589068531990051},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5313907861709595},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.5083159804344177},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.48972252011299133},{"id":"https://openalex.org/keywords/interaction-information","display_name":"Interaction information","score":0.48190978169441223},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4628656804561615},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.4389481842517853},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2905735671520233},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2265537977218628},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.199464350938797},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1368875801563263},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.13125258684158325}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7882261276245117},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.6527320742607117},{"id":"https://openalex.org/C152724338","wikidata":"https://www.wikidata.org/wiki/Q909442","display_name":"KEGG","level":5,"score":0.6301298141479492},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6202000379562378},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5589068531990051},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5313907861709595},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.5083159804344177},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.48972252011299133},{"id":"https://openalex.org/C38764148","wikidata":"https://www.wikidata.org/wiki/Q17098245","display_name":"Interaction information","level":2,"score":0.48190978169441223},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4628656804561615},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.4389481842517853},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2905735671520233},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2265537977218628},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.199464350938797},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1368875801563263},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.13125258684158325},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkn853","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn853","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D629/3319971/gkn853.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:19004873","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19004873","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:digital.csic.es:10261/412965","is_oa":true,"landing_page_url":"http://hdl.handle.net/10261/412965","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"http://purl.org/coar/resource_type/c_6501"},{"id":"pmh:oai:e-archivo.uc3m.es:10016/9716","is_oa":false,"landing_page_url":"http://hdl.handle.net/10016/9716","pdf_url":null,"source":{"id":"https://openalex.org/S4306400817","display_name":"e-Archivo (Carlos III University of Madrid)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I50357001","host_organization_name":"Universidad Carlos III de Madrid","host_organization_lineage":["https://openalex.org/I50357001"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2686479","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2686479","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkn853","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn853","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D629/3319971/gkn853.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2155972151.pdf","grobid_xml":"https://content.openalex.org/works/W2155972151.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W1535487209","https://openalex.org/W1582212884","https://openalex.org/W1676036532","https://openalex.org/W1984765576","https://openalex.org/W2004325203","https://openalex.org/W2006933206","https://openalex.org/W2009966494","https://openalex.org/W2010577059","https://openalex.org/W2037442572","https://openalex.org/W2044514479","https://openalex.org/W2057885377","https://openalex.org/W2071221957","https://openalex.org/W2077776831","https://openalex.org/W2095724872","https://openalex.org/W2097698606","https://openalex.org/W2107424557","https://openalex.org/W2108078368","https://openalex.org/W2109715166","https://openalex.org/W2111574971","https://openalex.org/W2112322820","https://openalex.org/W2123060905","https://openalex.org/W2123501554","https://openalex.org/W2124567458","https://openalex.org/W2126991359","https://openalex.org/W2132926880","https://openalex.org/W2135805255","https://openalex.org/W2137012036","https://openalex.org/W2146312020","https://openalex.org/W2152568394","https://openalex.org/W2154860434","https://openalex.org/W2158714788","https://openalex.org/W2159675211","https://openalex.org/W4230941011","https://openalex.org/W4252706339"],"related_works":["https://openalex.org/W1964572291","https://openalex.org/W4387948744","https://openalex.org/W1987520879","https://openalex.org/W184793361","https://openalex.org/W2352732738","https://openalex.org/W2123060905","https://openalex.org/W2559588208","https://openalex.org/W4318778067","https://openalex.org/W1923384484","https://openalex.org/W2912862995"],"abstract_inverted_index":{"The":[0,122,157],"EcID":[1,72,112,128,165,186],"database":[2,166],"(Escherichia":[3],"coli":[4,50],"Interaction":[5],"Database)":[6],"provides":[7],"a":[8,117,171,177],"framework":[9],"for":[10,176],"the":[11,20,47,59,62,67,99,134,140,144,161,164],"integration":[12],"of":[13,75,101,136,146,163,173,179],"information":[14,42,88,154,167],"on":[15,43,86,98],"functional":[16],"interactions":[17,56],"extracted":[18,57],"from":[19,46,58,130,155],"following":[21],"sources:":[22],"EcoCyc":[23],"(metabolic":[24,32],"pathways,":[25],"protein":[26,44,81],"complexes":[27,45],"and":[28,35,54,91,94,109,143],"regulatory":[29],"information),":[30],"KEGG":[31],"pathways),":[33],"MINT":[34],"IntAct":[36],"(protein":[37],"interactions).":[38],"It":[39],"also":[40],"includes":[41],"two":[48,80,123],"E.":[49,147],"high-throughput":[51],"pull-down":[52],"experiments":[53],"potential":[55,174],"literature":[60],"using":[61],"web":[63],"services":[64],"associated":[65],"to":[66,114,184],"iHOP":[68],"text-mining":[69],"system.":[70],"Additionally,":[71],"incorporates":[73],"results":[74],"various":[76],"prediction":[77,83,116,172],"methods,":[78],"including":[79],"interaction":[82],"methods":[84,96],"based":[85,97],"genomic":[87],"(Phylogenetic":[89],"Profiles":[90],"Gene":[92],"Neighbourhoods)":[93],"three":[95],"analysis":[100],"co-evolution":[102],"(Mirror":[103],"Tree,":[104],"In":[105],"Silico":[106],"2":[107],"Hybrid":[108],"Context":[110],"Mirror).":[111],"associates":[113],"each":[115],"specifically":[118],"developed":[119],"confidence":[120],"score.":[121],"main":[124],"features":[125],"that":[126],"make":[127],"different":[129],"other":[131],"systems":[132],"are":[133,168],"combination":[135,162],"co-evolution-based":[137],"predictions":[138],"with":[139,170],"experimental":[141],"data,":[142],"introduction":[145],"coli-specific":[148],"information,":[149],"such":[150],"as":[151],"gene":[152],"regulation":[153],"EcoCyc.":[156],"possibilities":[158],"offered":[159],"by":[160],"illustrated":[169],"functions":[175],"group":[178],"poorly":[180],"characterized":[181],"genes":[182],"related":[183],"yeaG.":[185],"is":[187],"available":[188],"online":[189],"at":[190],"http://ecid.bioinfo.cnio.es.":[191]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":6}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}