{"id":"https://openalex.org/W2075183960","doi":"https://doi.org/10.1093/nar/gkn848","title":"SysPIMP: the web-based systematical platform for identifying human disease-related mutated sequences from mass spectrometry","display_name":"SysPIMP: the web-based systematical platform for identifying human disease-related mutated sequences from mass spectrometry","publication_year":2008,"publication_date":"2008-11-26","ids":{"openalex":"https://openalex.org/W2075183960","doi":"https://doi.org/10.1093/nar/gkn848","mag":"2075183960","pmid":"https://pubmed.ncbi.nlm.nih.gov/19036792"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkn848","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn848","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D913/3314983/gkn848.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D913/3314983/gkn848.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111889462","display_name":"Huanlei Xi","orcid":null},"institutions":[{"id":"https://openalex.org/I4210158445","display_name":"Institute of Natural Science","ror":"https://ror.org/004tze884","country_code":"KP","type":"education","lineage":["https://openalex.org/I4210158445"]}],"countries":["KP"],"is_corresponding":false,"raw_author_name":"H. Xi","raw_affiliation_strings":["Department of Bioinformatics and Biostatistics, College of Life Science and Biotechnology, Shanghai Jiao Tong University, Seoul 151-921, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Biostatistics, College of Life Science and Biotechnology, Shanghai Jiao Tong University, Seoul 151-921, Korea","institution_ids":["https://openalex.org/I4210158445"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064531963","display_name":"Jongsun Park","orcid":"https://orcid.org/0000-0003-0786-4701"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"J. Park","raw_affiliation_strings":["Department of Bioinformatics and Biostatistics, College of Life Science and Biotechnology, Shanghai Jiao Tong University, 2Fungal Bioinformatics Laboratory, 3Department of Agricultural Biotechnology, 4Center for Fungal Genetic Resource, Seoul National University, Seoul 151-921, Korea, 5Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences and 6Shanghai Center for Bioinformation Technology, Shanghai, China","Shanghai Jiao Tong University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Biostatistics, College of Life Science and Biotechnology, Shanghai Jiao Tong University, 2Fungal Bioinformatics Laboratory, 3Department of Agricultural Biotechnology, 4Center for Fungal Genetic Resource, Seoul National University, Seoul 151-921, Korea, 5Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences and 6Shanghai Center for Bioinformation Technology, Shanghai, China","institution_ids":["https://openalex.org/I183067930","https://openalex.org/I4210106477"]},{"raw_affiliation_string":"Shanghai Jiao Tong University, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045411679","display_name":"Guolian Ding","orcid":"https://orcid.org/0000-0002-0099-9980"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"G. Ding","raw_affiliation_strings":["Department of Bioinformatics and Biostatistics, College of Life Science and Biotechnology, Shanghai Jiao Tong University, 2Fungal Bioinformatics Laboratory, 3Department of Agricultural Biotechnology, 4Center for Fungal Genetic Resource, Seoul National University, Seoul 151-921, Korea, 5Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences and 6Shanghai Center for Bioinformation Technology, Shanghai, China","Shanghai Jiao Tong University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Biostatistics, College of Life Science and Biotechnology, Shanghai Jiao Tong University, 2Fungal Bioinformatics Laboratory, 3Department of Agricultural Biotechnology, 4Center for Fungal Genetic Resource, Seoul National University, Seoul 151-921, Korea, 5Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences and 6Shanghai Center for Bioinformation Technology, Shanghai, China","institution_ids":["https://openalex.org/I183067930","https://openalex.org/I4210106477"]},{"raw_affiliation_string":"Shanghai Jiao Tong University, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100393963","display_name":"Young Ho Lee","orcid":"https://orcid.org/0000-0001-8088-5694"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Y.-H. Lee","raw_affiliation_strings":["Department of Bioinformatics and Biostatistics, College of Life Science and Biotechnology, Shanghai Jiao Tong University, 2Fungal Bioinformatics Laboratory, 3Department of Agricultural Biotechnology, 4Center for Fungal Genetic Resource, Seoul National University, Seoul 151-921, Korea, 5Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences and 6Shanghai Center for Bioinformation Technology, Shanghai, China","Shanghai Jiao Tong University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Biostatistics, College of Life Science and Biotechnology, Shanghai Jiao Tong University, 2Fungal Bioinformatics Laboratory, 3Department of Agricultural Biotechnology, 4Center for Fungal Genetic Resource, Seoul National University, Seoul 151-921, Korea, 5Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences and 6Shanghai Center for Bioinformation Technology, Shanghai, China","institution_ids":["https://openalex.org/I183067930","https://openalex.org/I4210106477"]},{"raw_affiliation_string":"Shanghai Jiao Tong University, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008280608","display_name":"Yixue Li","orcid":"https://orcid.org/0000-0002-1198-7176"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Y. Li","raw_affiliation_strings":["Shanghai Jiao Tong University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shanghai Jiao Tong University, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.5391,"has_fulltext":false,"cited_by_count":20,"citation_normalized_percentile":{"value":0.8412621,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"37","issue":"Database","first_page":"D913","last_page":"D920"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9904000163078308,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.724797248840332},{"id":"https://openalex.org/keywords/human-disease","display_name":"Human disease","score":0.6494259834289551},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.5603797435760498},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5577836632728577},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.49055904150009155},{"id":"https://openalex.org/keywords/mutant","display_name":"Mutant","score":0.4582769572734833},{"id":"https://openalex.org/keywords/tandem-mass-spectrometry","display_name":"Tandem mass spectrometry","score":0.4409283399581909},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4381941854953766},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.42419907450675964},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.41262906789779663},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.39228522777557373},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.18005216121673584},{"id":"https://openalex.org/keywords/mass-spectrometry","display_name":"Mass spectrometry","score":0.17751073837280273},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1746768355369568},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.06963276863098145}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.724797248840332},{"id":"https://openalex.org/C2988867146","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Human disease","level":3,"score":0.6494259834289551},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.5603797435760498},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5577836632728577},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.49055904150009155},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.4582769572734833},{"id":"https://openalex.org/C31827203","wikidata":"https://www.wikidata.org/wiki/Q874296","display_name":"Tandem mass spectrometry","level":3,"score":0.4409283399581909},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4381941854953766},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.42419907450675964},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.41262906789779663},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.39228522777557373},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.18005216121673584},{"id":"https://openalex.org/C162356407","wikidata":"https://www.wikidata.org/wiki/Q180809","display_name":"Mass spectrometry","level":2,"score":0.17751073837280273},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1746768355369568},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.06963276863098145},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004252","descriptor_name":"DNA Mutational Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004252","descriptor_name":"DNA Mutational Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004252","descriptor_name":"DNA Mutational Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004252","descriptor_name":"DNA Mutational Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkn848","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn848","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D913/3314983/gkn848.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:19036792","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19036792","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2686442","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2686442","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkn848","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn848","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D913/3314983/gkn848.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":51,"referenced_works":["https://openalex.org/W1587004646","https://openalex.org/W1970172595","https://openalex.org/W1978134186","https://openalex.org/W1981593008","https://openalex.org/W1981978551","https://openalex.org/W1984745908","https://openalex.org/W1987965864","https://openalex.org/W1994127362","https://openalex.org/W1995648971","https://openalex.org/W2000346726","https://openalex.org/W2004562085","https://openalex.org/W2010595044","https://openalex.org/W2015358077","https://openalex.org/W2023096047","https://openalex.org/W2044740902","https://openalex.org/W2046508931","https://openalex.org/W2046702406","https://openalex.org/W2057029228","https://openalex.org/W2057395277","https://openalex.org/W2058772523","https://openalex.org/W2063274819","https://openalex.org/W2063857715","https://openalex.org/W2066614521","https://openalex.org/W2067620347","https://openalex.org/W2083045667","https://openalex.org/W2096525273","https://openalex.org/W2109032358","https://openalex.org/W2114948711","https://openalex.org/W2119412782","https://openalex.org/W2123340910","https://openalex.org/W2125203512","https://openalex.org/W2127230663","https://openalex.org/W2130706354","https://openalex.org/W2131588085","https://openalex.org/W2134324352","https://openalex.org/W2139624975","https://openalex.org/W2147791092","https://openalex.org/W2148830266","https://openalex.org/W2152461670","https://openalex.org/W2157961977","https://openalex.org/W2163319390","https://openalex.org/W2168136109","https://openalex.org/W2168909179","https://openalex.org/W2171546784","https://openalex.org/W2178351146","https://openalex.org/W2244694483","https://openalex.org/W2433854282","https://openalex.org/W4206724286","https://openalex.org/W4207034695","https://openalex.org/W4245543257","https://openalex.org/W4248234957"],"related_works":["https://openalex.org/W2155835698","https://openalex.org/W2076096978","https://openalex.org/W2094337488","https://openalex.org/W2350587855","https://openalex.org/W2044028228","https://openalex.org/W2994288809","https://openalex.org/W4240785775","https://openalex.org/W2027223071","https://openalex.org/W2016241131","https://openalex.org/W2004515150"],"abstract_inverted_index":{"Some":[0],"mutations":[1],"resulting":[2],"in":[3,54,62,153,182,199],"protein":[4],"sequence":[5],"change":[6],"might":[7],"be":[8,210],"tightly":[9],"related":[10],"to":[11,85,149,162,172],"certain":[12],"human":[13,41,88,111,133,179,218],"diseases":[14,219],"by":[15,143,221],"affecting":[16],"its":[17],"roles,":[18],"such":[19,28],"as":[20,29],"sickle":[21],"cell":[22],"anemia.":[23],"Until":[24],"now":[25],"several":[26],"databases,":[27,130],"PMD,":[30],"OMIM":[31,124,144],"and":[32,114,116,118,128,215],"HGMD,":[33],"have":[34],"been":[35,49],"developed,":[36],"providing":[37],"useful":[38],"information":[39,141],"about":[40],"disease-related":[42,66,89,134,180,190],"mutation.":[43,222],"Tandem":[44],"mass":[45],"spectrometry":[46],"(MS)":[47],"has":[48],"used":[50,161],"for":[51,64,77,109,201,213],"characterizing":[52],"proteins":[53,68,91,164],"various":[55],"conditions;":[56],"however,":[57],"there":[58],"is":[59],"no":[60],"system":[61],"place":[63],"finding":[65],"mutated":[67,90,135,191],"within":[69,92,165],"the":[70,147,175,211],"MS":[71,93,166,183],"results.":[72,94,184],"Here,":[73],"a":[74,101,106,120],"Systematical":[75],"Platform":[76],"Identifying":[78],"Mutated":[79],"Proteins":[80],"(SysPIMP;":[81],"http://pimp.starflr.info/)":[82],"was":[83,168],"developed":[84],"efficiently":[86,214],"identify":[87,163],"SysPIMP":[95,171,200,208],"comprises":[96],"of":[97,177],"three":[98],"layers:":[99],"(i)":[100],"standardized":[102],"data":[103],"warehouse,":[104],"(ii)":[105],"pipeline":[107],"layer":[108],"maintaining":[110],"disease":[112,140],"databases":[113],"X!Tandem":[115],"BLAST":[117],"(iii)":[119],"web-based":[121],"interface.":[122],"From":[123],"AV":[125],"part,":[126],"PMD":[127],"SwissProt":[129],"35,497":[131],"non-redundant":[132,189],"sequences":[136,151,195],"were":[137],"collected":[138],"with":[139,188],"described":[142],"terms.":[145],"With":[146],"interfaces":[148],"browse":[150],"archived":[152],"SysPIMP,":[154],"X!Tandem,":[155],"an":[156],"open":[157],"source":[158],"database-search":[159],"engine":[160],"data,":[167],"integrated":[169],"into":[170],"help":[173],"support":[174],"detection":[176],"potential":[178],"mutants":[181],"In":[185],"addition,":[186],"together":[187],"sequences,":[192],"original":[193],"non-mutated":[194],"are":[196],"also":[197],"provided":[198],"comparative":[202],"research.":[203],"Based":[204],"on":[205],"this":[206],"system,":[207],"will":[209],"platform":[212],"intensively":[216],"studying":[217],"caused":[220]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":4}],"updated_date":"2026-05-19T21:40:30.786675","created_date":"2025-10-10T00:00:00"}
