{"id":"https://openalex.org/W2104245599","doi":"https://doi.org/10.1093/nar/gkn826","title":"metaTIGER: a metabolic evolution resource","display_name":"metaTIGER: a metabolic evolution resource","publication_year":2008,"publication_date":"2008-10-25","ids":{"openalex":"https://openalex.org/W2104245599","doi":"https://doi.org/10.1093/nar/gkn826","mag":"2104245599","pmid":"https://pubmed.ncbi.nlm.nih.gov/18953037"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkn826","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn826","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D531/16758432/gkn826.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D531/16758432/gkn826.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001358993","display_name":"John W. Whitaker","orcid":"https://orcid.org/0000-0002-0585-9119"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"John W. Whitaker","raw_affiliation_strings":["Institute of Molecular and Cellular Biology, Garstang Building, University of Leeds, Leeds, W. Yorks, LS2 9JT, UK"],"affiliations":[{"raw_affiliation_string":"Institute of Molecular and Cellular Biology, Garstang Building, University of Leeds, Leeds, W. Yorks, LS2 9JT, UK","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072645674","display_name":"Ivica Letuni\u0107","orcid":"https://orcid.org/0000-0003-3560-4288"},"institutions":[{"id":"https://openalex.org/I130828816","display_name":"University of Leeds","ror":"https://ror.org/024mrxd33","country_code":"GB","type":"education","lineage":["https://openalex.org/I130828816"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ivica Letunic","raw_affiliation_strings":["Institute of Molecular and Cellular Biology, Garstang Building, University of Leeds, Leeds, W. Yorks, LS2 9JT, UK and 2EMBL Heidelberg, Meyerhofstra\u00dfe 1, 69117 Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Molecular and Cellular Biology, Garstang Building, University of Leeds, Leeds, W. Yorks, LS2 9JT, UK and 2EMBL Heidelberg, Meyerhofstra\u00dfe 1, 69117 Heidelberg, Germany","institution_ids":["https://openalex.org/I130828816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034461719","display_name":"Glenn A. McConkey","orcid":"https://orcid.org/0000-0001-6529-794X"},"institutions":[{"id":"https://openalex.org/I130828816","display_name":"University of Leeds","ror":"https://ror.org/024mrxd33","country_code":"GB","type":"education","lineage":["https://openalex.org/I130828816"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Glenn A. McConkey","raw_affiliation_strings":["Institute of Molecular and Cellular Biology, Garstang Building, University of Leeds, Leeds, W. Yorks, LS2 9JT, UK and 2EMBL Heidelberg, Meyerhofstra\u00dfe 1, 69117 Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Molecular and Cellular Biology, Garstang Building, University of Leeds, Leeds, W. Yorks, LS2 9JT, UK and 2EMBL Heidelberg, Meyerhofstra\u00dfe 1, 69117 Heidelberg, Germany","institution_ids":["https://openalex.org/I130828816"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032833705","display_name":"David R. Westhead","orcid":"https://orcid.org/0000-0002-0519-3820"},"institutions":[{"id":"https://openalex.org/I130828816","display_name":"University of Leeds","ror":"https://ror.org/024mrxd33","country_code":"GB","type":"education","lineage":["https://openalex.org/I130828816"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"David R. Westhead","raw_affiliation_strings":["Institute of Molecular and Cellular Biology, Garstang Building, University of Leeds, Leeds, W. Yorks, LS2 9JT, UK and 2EMBL Heidelberg, Meyerhofstra\u00dfe 1, 69117 Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Molecular and Cellular Biology, Garstang Building, University of Leeds, Leeds, W. Yorks, LS2 9JT, UK and 2EMBL Heidelberg, Meyerhofstra\u00dfe 1, 69117 Heidelberg, Germany","institution_ids":["https://openalex.org/I130828816"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5001358993"],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.0678,"has_fulltext":true,"cited_by_count":34,"citation_normalized_percentile":{"value":0.86642134,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"37","issue":"suppl_1","first_page":"D531","last_page":"D538"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8367199897766113},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.8348844051361084},{"id":"https://openalex.org/keywords/horizontal-gene-transfer","display_name":"Horizontal gene transfer","score":0.6852655410766602},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.62862628698349},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.6159393787384033},{"id":"https://openalex.org/keywords/tree-of-life","display_name":"Tree of life (biology)","score":0.5857614874839783},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5793402194976807},{"id":"https://openalex.org/keywords/phylogenetic-network","display_name":"Phylogenetic network","score":0.5202327966690063},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.5185573697090149},{"id":"https://openalex.org/keywords/phylogenomics","display_name":"Phylogenomics","score":0.5133832693099976},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5057752132415771},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.45499664545059204},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.42043134570121765},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3173680007457733},{"id":"https://openalex.org/keywords/clade","display_name":"Clade","score":0.2345212996006012},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.12657922506332397}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8367199897766113},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.8348844051361084},{"id":"https://openalex.org/C92938381","wikidata":"https://www.wikidata.org/wiki/Q83185","display_name":"Horizontal gene transfer","level":4,"score":0.6852655410766602},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.62862628698349},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.6159393787384033},{"id":"https://openalex.org/C124388736","wikidata":"https://www.wikidata.org/wiki/Q3247497","display_name":"Tree of life (biology)","level":4,"score":0.5857614874839783},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5793402194976807},{"id":"https://openalex.org/C26619641","wikidata":"https://www.wikidata.org/wiki/Q3142246","display_name":"Phylogenetic network","level":4,"score":0.5202327966690063},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.5185573697090149},{"id":"https://openalex.org/C70343354","wikidata":"https://www.wikidata.org/wiki/Q3381973","display_name":"Phylogenomics","level":5,"score":0.5133832693099976},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5057752132415771},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.45499664545059204},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.42043134570121765},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3173680007457733},{"id":"https://openalex.org/C44465124","wikidata":"https://www.wikidata.org/wiki/Q713623","display_name":"Clade","level":4,"score":0.2345212996006012},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.12657922506332397},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022761","descriptor_name":"Gene Transfer, Horizontal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022761","descriptor_name":"Gene Transfer, Horizontal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022761","descriptor_name":"Gene Transfer, Horizontal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkn826","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn826","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D531/16758432/gkn826.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:18953037","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18953037","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:osti.gov:1625454","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1625454","pdf_url":"https://www.osti.gov/servlets/purl/1625454","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2686446","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2686446","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkn826","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn826","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D531/16758432/gkn826.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320316170","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337"},{"id":"https://openalex.org/F4320320298","display_name":"University of Leeds","ror":"https://ror.org/024mrxd33"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2104245599.pdf","grobid_xml":"https://content.openalex.org/works/W2104245599.grobid-xml"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W1543460201","https://openalex.org/W1933357484","https://openalex.org/W1964343317","https://openalex.org/W1971185254","https://openalex.org/W1975238322","https://openalex.org/W1982447955","https://openalex.org/W1991910495","https://openalex.org/W2018607102","https://openalex.org/W2019851585","https://openalex.org/W2030767437","https://openalex.org/W2037843515","https://openalex.org/W2044196573","https://openalex.org/W2049699895","https://openalex.org/W2052470422","https://openalex.org/W2053235121","https://openalex.org/W2061291780","https://openalex.org/W2069502786","https://openalex.org/W2069841722","https://openalex.org/W2078969200","https://openalex.org/W2101477900","https://openalex.org/W2103103799","https://openalex.org/W2103546861","https://openalex.org/W2107903949","https://openalex.org/W2119464316","https://openalex.org/W2119501380","https://openalex.org/W2121166240","https://openalex.org/W2123043199","https://openalex.org/W2123179582","https://openalex.org/W2123672359","https://openalex.org/W2124967403","https://openalex.org/W2127256180","https://openalex.org/W2128601422","https://openalex.org/W2132926880","https://openalex.org/W2147714160","https://openalex.org/W2148000475","https://openalex.org/W2150864606","https://openalex.org/W2158714788","https://openalex.org/W2159957100","https://openalex.org/W2162215524","https://openalex.org/W2162327194","https://openalex.org/W2162367459","https://openalex.org/W2165674132","https://openalex.org/W2315135172","https://openalex.org/W4230392683","https://openalex.org/W4231784440","https://openalex.org/W4240231372"],"related_works":["https://openalex.org/W2056568233","https://openalex.org/W1997697005","https://openalex.org/W2150133233","https://openalex.org/W2170074068","https://openalex.org/W2066227142","https://openalex.org/W2086569686","https://openalex.org/W2057191541","https://openalex.org/W2766938144","https://openalex.org/W4309766482","https://openalex.org/W2011735044"],"abstract_inverted_index":{"Metabolic":[0],"networks":[1,156],"are":[2],"a":[3,24,89],"subject":[4],"that":[5],"has":[6,58],"received":[7],"much":[8],"attention,":[9],"but":[10],"existing":[11],"web":[12],"resources":[13],"do":[14],"not":[15],"include":[16],"extensive":[17],"phylogenetic":[18,95],"information.":[19],"Phylogenomic":[20],"approaches":[21],"(phylogenetics":[22],"on":[23],"genomic":[25,62],"scale)":[26],"have":[27],"been":[28,59],"shown":[29],"to":[30,53,75,87],"be":[31,105],"effective":[32],"in":[33,157],"the":[34,47,77,131,154],"study":[35],"of":[36,49,79,92,117,134,136,172,176],"evolution":[37],"and":[38,67,70,147,152,164],"processes":[39],"like":[40],"horizontal":[41],"gene":[42],"transfer":[43],"(HGT).":[44],"To":[45],"address":[46],"lack":[48],"phylogenomic":[50],"information":[51,63],"relating":[52],"eukaryotic":[54],"metabolism,":[55],"metaTIGER":[56,143,166],"(www.bioinformatics.leeds.ac.uk/metatiger)":[57],"created,":[60],"using":[61,107],"from":[64,180],"121":[65],"eukaryotes":[66],"404":[68],"prokaryotes":[69],"sensitive":[71],"sequence":[72],"search":[73],"techniques":[74],"predict":[76],"presence":[78],"metabolic":[80,155],"enzymes.":[81],"These":[82],"enzyme":[83],"sequences":[84],"were":[85],"used":[86],"create":[88],"comprehensive":[90],"database":[91],"2257":[93],"maximum-likelihood":[94],"trees,":[96],"some":[97],"containing":[98,139],"over":[99],"500":[100],"organisms.":[101],"The":[102],"trees":[103,135],"can":[104],"viewed":[106],"iTOL,":[108],"an":[109],"advanced":[110],"interactive":[111],"tree":[112,122],"viewer,":[113],"enabling":[114],"straightforward":[115],"interpretation":[116],"large":[118],"trees.":[119],"Complex":[120],"high-throughput":[121],"analysis":[123,171],"is":[124,167],"also":[125,144],"available":[126],"through":[127,169],"user-defined":[128],"queries,":[129],"allowing":[130],"rapid":[132],"identification":[133,175],"interest,":[137],"e.g.":[138],"putative":[140],"HGT":[141],"events.":[142],"provides":[145],"novel":[146],"easy-to-use":[148],"facilities":[149],"for":[150],"viewing":[151],"comparing":[153],"different":[158],"organisms":[159],"via":[160],"highlighted":[161],"pathway":[162],"images":[163],"tables.":[165],"demonstrated":[168],"evolutionary":[170],"Plasmodium,":[173],"including":[174],"genes":[177],"horizontally":[178],"transferred":[179],"chlamydia.":[181]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":3}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
