{"id":"https://openalex.org/W2150447055","doi":"https://doi.org/10.1093/nar/gkn821","title":"OryGenesDB 2008 update: database interoperability for functional genomics of rice","display_name":"OryGenesDB 2008 update: database interoperability for functional genomics of rice","publication_year":2008,"publication_date":"2008-11-26","ids":{"openalex":"https://openalex.org/W2150447055","doi":"https://doi.org/10.1093/nar/gkn821","mag":"2150447055","pmid":"https://pubmed.ncbi.nlm.nih.gov/19036791"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkn821","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn821","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D992/3301905/gkn821.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D992/3301905/gkn821.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018267453","display_name":"Ga\u00ebtan Droc","orcid":"https://orcid.org/0000-0003-1849-1269"},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I251321805","display_name":"Agropolis International","ror":"https://ror.org/00txxwv34","country_code":"FR","type":"other","lineage":["https://openalex.org/I251321805"]},{"id":"https://openalex.org/I4210136436","display_name":"Institut Agro Montpelier","ror":null,"country_code":"FR","type":null,"lineage":["https://openalex.org/I4210136436"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"G. Droc","raw_affiliation_strings":["CIRAD Dept BIOS UMR DAP - TA40/03, 34398 Montpellier, France","UMR DAP - D\u00e9veloppement et am\u00e9lioration des plantes (Agro M 2 place Viala 34060 Montpellier Cedex 1 pour le Cirad TA A-108 / 03 - Avenue Agropolis - 34398 Montpellier Cedex 5 - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CIRAD Dept BIOS UMR DAP - TA40/03, 34398 Montpellier, France","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I4210136436"]},{"raw_affiliation_string":"UMR DAP - D\u00e9veloppement et am\u00e9lioration des plantes (Agro M 2 place Viala 34060 Montpellier Cedex 1 pour le Cirad TA A-108 / 03 - Avenue Agropolis - 34398 Montpellier Cedex 5 - France)","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I251321805"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027913002","display_name":"Christophe P\u00e9rin","orcid":"https://orcid.org/0000-0002-2469-310X"},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I251321805","display_name":"Agropolis International","ror":"https://ror.org/00txxwv34","country_code":"FR","type":"other","lineage":["https://openalex.org/I251321805"]},{"id":"https://openalex.org/I4210152316","display_name":"Mod\u00e9lisation et Ing\u00e9nierie des Syst\u00e8mes Complexes Biologiques pour le Diagnostic","ror":"https://ror.org/056mmjd70","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210152316","https://openalex.org/I4210166450"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"C. Perin","raw_affiliation_strings":["CIRAD Dept BIOS UMR DAP - TA40/03 34398 Montpellier France","UMR DAP - D\u00e9veloppement et am\u00e9lioration des plantes (Agro M 2 place Viala 34060 Montpellier Cedex 1 pour le Cirad TA A-108 / 03 - Avenue Agropolis - 34398 Montpellier Cedex 5 - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CIRAD Dept BIOS UMR DAP - TA40/03 34398 Montpellier France","institution_ids":["https://openalex.org/I4210152316","https://openalex.org/I131077856"]},{"raw_affiliation_string":"UMR DAP - D\u00e9veloppement et am\u00e9lioration des plantes (Agro M 2 place Viala 34060 Montpellier Cedex 1 pour le Cirad TA A-108 / 03 - Avenue Agropolis - 34398 Montpellier Cedex 5 - France)","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I251321805"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026630736","display_name":"S\u00e9bastien Fromentin","orcid":null},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I251321805","display_name":"Agropolis International","ror":"https://ror.org/00txxwv34","country_code":"FR","type":"other","lineage":["https://openalex.org/I251321805"]},{"id":"https://openalex.org/I4210152316","display_name":"Mod\u00e9lisation et Ing\u00e9nierie des Syst\u00e8mes Complexes Biologiques pour le Diagnostic","ror":"https://ror.org/056mmjd70","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210152316","https://openalex.org/I4210166450"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"S. Fromentin","raw_affiliation_strings":["CIRAD Dept BIOS UMR DAP - TA40/03 34398 Montpellier France","UMR DAP - D\u00e9veloppement et am\u00e9lioration des plantes (Agro M 2 place Viala 34060 Montpellier Cedex 1 pour le Cirad TA A-108 / 03 - Avenue Agropolis - 34398 Montpellier Cedex 5 - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CIRAD Dept BIOS UMR DAP - TA40/03 34398 Montpellier France","institution_ids":["https://openalex.org/I4210152316","https://openalex.org/I131077856"]},{"raw_affiliation_string":"UMR DAP - D\u00e9veloppement et am\u00e9lioration des plantes (Agro M 2 place Viala 34060 Montpellier Cedex 1 pour le Cirad TA A-108 / 03 - Avenue Agropolis - 34398 Montpellier Cedex 5 - France)","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I251321805"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063266192","display_name":"Pierre Larmande","orcid":"https://orcid.org/0000-0002-2923-9790"},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I251321805","display_name":"Agropolis International","ror":"https://ror.org/00txxwv34","country_code":"FR","type":"other","lineage":["https://openalex.org/I251321805"]},{"id":"https://openalex.org/I4210152316","display_name":"Mod\u00e9lisation et Ing\u00e9nierie des Syst\u00e8mes Complexes Biologiques pour le Diagnostic","ror":"https://ror.org/056mmjd70","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210152316","https://openalex.org/I4210166450"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"P. Larmande","raw_affiliation_strings":["CIRAD Dept BIOS UMR DAP - TA40/03 34398 Montpellier France","UMR DAP - D\u00e9veloppement et am\u00e9lioration des plantes (Agro M 2 place Viala 34060 Montpellier Cedex 1 pour le Cirad TA A-108 / 03 - Avenue Agropolis - 34398 Montpellier Cedex 5 - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CIRAD Dept BIOS UMR DAP - TA40/03 34398 Montpellier France","institution_ids":["https://openalex.org/I4210152316","https://openalex.org/I131077856"]},{"raw_affiliation_string":"UMR DAP - D\u00e9veloppement et am\u00e9lioration des plantes (Agro M 2 place Viala 34060 Montpellier Cedex 1 pour le Cirad TA A-108 / 03 - Avenue Agropolis - 34398 Montpellier Cedex 5 - France)","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I251321805"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5018267453"],"corresponding_institution_ids":["https://openalex.org/I131077856","https://openalex.org/I251321805","https://openalex.org/I4210136436"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.6844,"has_fulltext":false,"cited_by_count":61,"citation_normalized_percentile":{"value":0.8379398,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"37","issue":"Database","first_page":"D992","last_page":"D995"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9753000140190125,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.7356722354888916},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6461076736450195},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.6433789730072021},{"id":"https://openalex.org/keywords/functional-genomics","display_name":"Functional genomics","score":0.5712373852729797},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5504603385925293},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5289708971977234},{"id":"https://openalex.org/keywords/workbench","display_name":"Workbench","score":0.4851123094558716},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4555484354496002},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4526101350784302},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.4522179365158081},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.35908448696136475},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3154984712600708},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.26287955045700073},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.22461220622062683},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.17346179485321045},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1399078369140625},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.08929365873336792},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07697811722755432}],"concepts":[{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.7356722354888916},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6461076736450195},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.6433789730072021},{"id":"https://openalex.org/C161078062","wikidata":"https://www.wikidata.org/wiki/Q1068690","display_name":"Functional genomics","level":5,"score":0.5712373852729797},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5504603385925293},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5289708971977234},{"id":"https://openalex.org/C2779145975","wikidata":"https://www.wikidata.org/wiki/Q347690","display_name":"Workbench","level":3,"score":0.4851123094558716},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4555484354496002},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4526101350784302},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.4522179365158081},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35908448696136475},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3154984712600708},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.26287955045700073},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.22461220622062683},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.17346179485321045},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1399078369140625},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.08929365873336792},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07697811722755432},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016254","descriptor_name":"Mutagenesis, Insertional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016254","descriptor_name":"Mutagenesis, Insertional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016254","descriptor_name":"Mutagenesis, Insertional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016324","descriptor_name":"Sequence Tagged Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016324","descriptor_name":"Sequence Tagged Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016324","descriptor_name":"Sequence Tagged Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkn821","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn821","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D992/3301905/gkn821.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:19036791","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19036791","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:HAL:hal-01218997v1","is_oa":true,"landing_page_url":"https://hal.science/hal-01218997","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 2009, 37 (Database issue), pp.D992-D995. &#x27E8;10.1093/nar/gkn821&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:agritrop.cirad.fr:547691","is_oa":false,"landing_page_url":"http://agritrop.cirad.fr/547691/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402311","display_name":"Agritrop (Cirad)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I131077856","host_organization_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","host_organization_lineage":["https://openalex.org/I131077856"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:prodinra.inra.fr:36768","is_oa":false,"landing_page_url":"http://prodinra.inra.fr/ft/F6AC40D6-3EC4-4D6C-9B35-D75F9584E451","pdf_url":null,"source":{"id":"https://openalex.org/S4306400794","display_name":"Prodinra (INRA Bordeaux-Aquitaine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210088668","host_organization_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","host_organization_lineage":["https://openalex.org/I4210088668"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research Database issue (37), D992\u2013D995. (2009)","raw_type":"ARTICLE"},{"id":"pmh:oai:pubmedcentral.nih.gov:2686528","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2686528","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkn821","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn821","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D992/3301905/gkn821.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.5899999737739563,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2150447055.pdf"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1706564076","https://openalex.org/W1936311994","https://openalex.org/W1996902131","https://openalex.org/W2057543502","https://openalex.org/W2069579071","https://openalex.org/W2083303134","https://openalex.org/W2100990314","https://openalex.org/W2111973517","https://openalex.org/W2111990626","https://openalex.org/W2123060905","https://openalex.org/W2148118968","https://openalex.org/W2154517230","https://openalex.org/W2157632282","https://openalex.org/W2164362189","https://openalex.org/W2169826929","https://openalex.org/W2434727352"],"related_works":["https://openalex.org/W2396746549","https://openalex.org/W2360935227","https://openalex.org/W2364993072","https://openalex.org/W2115576822","https://openalex.org/W2356429006","https://openalex.org/W2380568150","https://openalex.org/W2385787406","https://openalex.org/W2155595079","https://openalex.org/W4362472570","https://openalex.org/W2411510900"],"abstract_inverted_index":{"OryGenesDB":[0,10,36,80],"(http://orygenesdb.cirad.fr/index.html)":[1],"is":[2,88],"a":[3,89,143],"database":[4],"developed":[5,95,108,156],"for":[6,149,157],"rice":[7,99],"reverse":[8],"genetics.":[9],"contains":[11,37],"FSTs":[12,68],"(flanking":[13],"sequence":[14],"tags)":[15],"of":[16,35,79,105,163],"various":[17],"mutagens":[18],"and":[19,29,40,69,86,116,129,134,145],"functional":[20,100,150],"genomics":[21,101],"data,":[22],"collected":[23],"from":[24],"both":[25,131],"international":[26],"insertion":[27,74],"collections":[28],"the":[30,58,64,84,106,132,153,168],"literature.":[31],"The":[32,76],"current":[33],"release":[34],"171,000":[38],"FSTs,":[39],"annotations":[41],"divided":[42],"among":[43],"10":[44],"specific":[45],"categories,":[46],"totaling":[47],"78":[48],"annotation":[49],"layers.":[50],"Several":[51],"additional":[52],"tools":[53,62],"have":[54],"been":[55],"added":[56],"to":[57,66,72,96,121],"main":[59],"interface;":[60],"these":[61,126,171],"enable":[63],"user":[65],"retrieve":[67],"design":[70],"probes":[71],"analyze":[73],"lines.":[75],"major":[77],"innovation":[78],"2008,":[81],"besides":[82],"updating":[83],"data":[85],"tools,":[87],"new":[90],"tool,":[91],"Orylink,":[92],"which":[93],"was":[94,119],"speed":[97],"up":[98],"by":[102],"taking":[103],"advantage":[104],"resources":[107],"in":[109,137],"two":[110],"related":[111],"databases,":[112],"Oryza":[113],"Tag":[114],"Line":[115],"GreenPhylDB.":[117],"Orylink":[118,141,158],"designed":[120],"field":[122],"complex":[123],"queries":[124,133],"across":[125],"three":[127],"databases":[128],"store":[130],"their":[135],"results":[136],"an":[138],"intuitive":[139],"manner.":[140],"offers":[142],"simple":[144],"powerful":[146],"virtual":[147],"workbench":[148],"genomics.":[151],"Alternatively,":[152],"Web":[154,165],"services":[155],"can":[159],"be":[160],"used":[161],"independently":[162],"its":[164],"interface,":[166],"increasing":[167],"interoperability":[169],"between":[170],"different":[172],"bioinformatics":[173],"applications.":[174]},"counts_by_year":[{"year":2022,"cited_by_count":27},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":2}],"updated_date":"2026-05-22T06:13:13.366637","created_date":"2025-10-10T00:00:00"}
