{"id":"https://openalex.org/W2086255487","doi":"https://doi.org/10.1093/nar/gkn805","title":"The Functional RNA Database 3.0: databases to support mining and annotation of functional RNAs","display_name":"The Functional RNA Database 3.0: databases to support mining and annotation of functional RNAs","publication_year":2008,"publication_date":"2008-10-23","ids":{"openalex":"https://openalex.org/W2086255487","doi":"https://doi.org/10.1093/nar/gkn805","mag":"2086255487","pmid":"https://pubmed.ncbi.nlm.nih.gov/18948287"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkn805","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn805","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D89/3293366/gkn805.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D89/3293366/gkn805.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015688097","display_name":"Toutai Mituyama","orcid":"https://orcid.org/0000-0002-1110-6375"},"institutions":[{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"T. Mituyama","raw_affiliation_strings":["National Institute of Advanced Industrial Science and Technology, Computational Biology Research Center, Tokyo 135-0064, Japan. mituyama-toutai@aist.go.jp","National Institute of Advanced Industrial Science and Technology, Computational Biology Research Center, Tokyo 135-0064, Japan"],"affiliations":[{"raw_affiliation_string":"National Institute of Advanced Industrial Science and Technology, Computational Biology Research Center, Tokyo 135-0064, Japan. mituyama-toutai@aist.go.jp","institution_ids":["https://openalex.org/I73613424"]},{"raw_affiliation_string":"National Institute of Advanced Industrial Science and Technology, Computational Biology Research Center, Tokyo 135-0064, Japan","institution_ids":["https://openalex.org/I73613424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079018881","display_name":"Kaori Yamada","orcid":"https://orcid.org/0000-0003-4075-9866"},"institutions":[{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"K. Yamada","raw_affiliation_strings":["National Institute of Advanced Industrial Science and Technology (AIST), Computational Biology Research Center (CBRC), Tokyo 135-0064, 2Information and Mathematical Science Laboratory, Inc., Department of Life Sciences, Tokyo 112-0012, 3INTEC Systems Institute, Inc., Biobusiness Division, Tokyo 136-0075 and 4Graduate School of Frontier Sciences, Department of Computational Biology, University of Tokyo, Chiba 277-8583, Japan","National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan"],"affiliations":[{"raw_affiliation_string":"National Institute of Advanced Industrial Science and Technology (AIST), Computational Biology Research Center (CBRC), Tokyo 135-0064, 2Information and Mathematical Science Laboratory, Inc., Department of Life Sciences, Tokyo 112-0012, 3INTEC Systems Institute, Inc., Biobusiness Division, Tokyo 136-0075 and 4Graduate School of Frontier Sciences, Department of Computational Biology, University of Tokyo, Chiba 277-8583, Japan","institution_ids":["https://openalex.org/I74801974","https://openalex.org/I73613424"]},{"raw_affiliation_string":"National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan","institution_ids":["https://openalex.org/I73613424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060768857","display_name":"Eiji Hattori","orcid":null},"institutions":[{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"E. Hattori","raw_affiliation_strings":["National Institute of Advanced Industrial Science and Technology (AIST), Computational Biology Research Center (CBRC), Tokyo 135-0064, 2Information and Mathematical Science Laboratory, Inc., Department of Life Sciences, Tokyo 112-0012, 3INTEC Systems Institute, Inc., Biobusiness Division, Tokyo 136-0075 and 4Graduate School of Frontier Sciences, Department of Computational Biology, University of Tokyo, Chiba 277-8583, Japan","National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan"],"affiliations":[{"raw_affiliation_string":"National Institute of Advanced Industrial Science and Technology (AIST), Computational Biology Research Center (CBRC), Tokyo 135-0064, 2Information and Mathematical Science Laboratory, Inc., Department of Life Sciences, Tokyo 112-0012, 3INTEC Systems Institute, Inc., Biobusiness Division, Tokyo 136-0075 and 4Graduate School of Frontier Sciences, Department of Computational Biology, University of Tokyo, Chiba 277-8583, Japan","institution_ids":["https://openalex.org/I74801974","https://openalex.org/I73613424"]},{"raw_affiliation_string":"National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan","institution_ids":["https://openalex.org/I73613424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041406590","display_name":"Hiroaki Okida","orcid":null},"institutions":[{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"H. Okida","raw_affiliation_strings":["National Institute of Advanced Industrial Science and Technology (AIST), Computational Biology Research Center (CBRC), Tokyo 135-0064, 2Information and Mathematical Science Laboratory, Inc., Department of Life Sciences, Tokyo 112-0012, 3INTEC Systems Institute, Inc., Biobusiness Division, Tokyo 136-0075 and 4Graduate School of Frontier Sciences, Department of Computational Biology, University of Tokyo, Chiba 277-8583, Japan","National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan"],"affiliations":[{"raw_affiliation_string":"National Institute of Advanced Industrial Science and Technology (AIST), Computational Biology Research Center (CBRC), Tokyo 135-0064, 2Information and Mathematical Science Laboratory, Inc., Department of Life Sciences, Tokyo 112-0012, 3INTEC Systems Institute, Inc., Biobusiness Division, Tokyo 136-0075 and 4Graduate School of Frontier Sciences, Department of Computational Biology, University of Tokyo, Chiba 277-8583, Japan","institution_ids":["https://openalex.org/I74801974","https://openalex.org/I73613424"]},{"raw_affiliation_string":"National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan","institution_ids":["https://openalex.org/I73613424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101878310","display_name":"Yusuke Ono","orcid":"https://orcid.org/0000-0001-8385-5386"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]},{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Y. Ono","raw_affiliation_strings":["National Institute of Advanced Industrial Science and Technology (AIST), Computational Biology Research Center (CBRC), Tokyo 135-0064, 2Information and Mathematical Science Laboratory, Inc., Department of Life Sciences, Tokyo 112-0012, 3INTEC Systems Institute, Inc., Biobusiness Division, Tokyo 136-0075 and 4Graduate School of Frontier Sciences, Department of Computational Biology, University of Tokyo, Chiba 277-8583, Japan","National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan"],"affiliations":[{"raw_affiliation_string":"National Institute of Advanced Industrial Science and Technology (AIST), Computational Biology Research Center (CBRC), Tokyo 135-0064, 2Information and Mathematical Science Laboratory, Inc., Department of Life Sciences, Tokyo 112-0012, 3INTEC Systems Institute, Inc., Biobusiness Division, Tokyo 136-0075 and 4Graduate School of Frontier Sciences, Department of Computational Biology, University of Tokyo, Chiba 277-8583, Japan","institution_ids":["https://openalex.org/I74801974","https://openalex.org/I73613424"]},{"raw_affiliation_string":"National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan","institution_ids":["https://openalex.org/I73613424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078752284","display_name":"Goro Terai","orcid":"https://orcid.org/0000-0002-1059-2519"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]},{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"G. Terai","raw_affiliation_strings":["National Institute of Advanced Industrial Science and Technology (AIST), Computational Biology Research Center (CBRC), Tokyo 135-0064, 2Information and Mathematical Science Laboratory, Inc., Department of Life Sciences, Tokyo 112-0012, 3INTEC Systems Institute, Inc., Biobusiness Division, Tokyo 136-0075 and 4Graduate School of Frontier Sciences, Department of Computational Biology, University of Tokyo, Chiba 277-8583, Japan","National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan"],"affiliations":[{"raw_affiliation_string":"National Institute of Advanced Industrial Science and Technology (AIST), Computational Biology Research Center (CBRC), Tokyo 135-0064, 2Information and Mathematical Science Laboratory, Inc., Department of Life Sciences, Tokyo 112-0012, 3INTEC Systems Institute, Inc., Biobusiness Division, Tokyo 136-0075 and 4Graduate School of Frontier Sciences, Department of Computational Biology, University of Tokyo, Chiba 277-8583, Japan","institution_ids":["https://openalex.org/I74801974","https://openalex.org/I73613424"]},{"raw_affiliation_string":"National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan","institution_ids":["https://openalex.org/I73613424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001540272","display_name":"Akiyasu C. Yoshizawa","orcid":"https://orcid.org/0000-0002-0870-5502"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]},{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"A. Yoshizawa","raw_affiliation_strings":["National Institute of Advanced Industrial Science and Technology (AIST), Computational Biology Research Center (CBRC), Tokyo 135-0064, 2Information and Mathematical Science Laboratory, Inc., Department of Life Sciences, Tokyo 112-0012, 3INTEC Systems Institute, Inc., Biobusiness Division, Tokyo 136-0075 and 4Graduate School of Frontier Sciences, Department of Computational Biology, University of Tokyo, Chiba 277-8583, Japan","National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan"],"affiliations":[{"raw_affiliation_string":"National Institute of Advanced Industrial Science and Technology (AIST), Computational Biology Research Center (CBRC), Tokyo 135-0064, 2Information and Mathematical Science Laboratory, Inc., Department of Life Sciences, Tokyo 112-0012, 3INTEC Systems Institute, Inc., Biobusiness Division, Tokyo 136-0075 and 4Graduate School of Frontier Sciences, Department of Computational Biology, University of Tokyo, Chiba 277-8583, Japan","institution_ids":["https://openalex.org/I74801974","https://openalex.org/I73613424"]},{"raw_affiliation_string":"National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan","institution_ids":["https://openalex.org/I73613424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034279785","display_name":"Takashi Komori","orcid":"https://orcid.org/0000-0002-6812-2149"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]},{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"T. Komori","raw_affiliation_strings":["National Institute of Advanced Industrial Science and Technology (AIST), Computational Biology Research Center (CBRC), Tokyo 135-0064, 2Information and Mathematical Science Laboratory, Inc., Department of Life Sciences, Tokyo 112-0012, 3INTEC Systems Institute, Inc., Biobusiness Division, Tokyo 136-0075 and 4Graduate School of Frontier Sciences, Department of Computational Biology, University of Tokyo, Chiba 277-8583, Japan","National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan"],"affiliations":[{"raw_affiliation_string":"National Institute of Advanced Industrial Science and Technology (AIST), Computational Biology Research Center (CBRC), Tokyo 135-0064, 2Information and Mathematical Science Laboratory, Inc., Department of Life Sciences, Tokyo 112-0012, 3INTEC Systems Institute, Inc., Biobusiness Division, Tokyo 136-0075 and 4Graduate School of Frontier Sciences, Department of Computational Biology, University of Tokyo, Chiba 277-8583, Japan","institution_ids":["https://openalex.org/I74801974","https://openalex.org/I73613424"]},{"raw_affiliation_string":"National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan","institution_ids":["https://openalex.org/I73613424"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035572759","display_name":"Kei Asai","orcid":"https://orcid.org/0000-0002-2454-0883"},"institutions":[{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"K. Asai","raw_affiliation_strings":["National Institute of Advanced Industrial Science and Technology (AIST), Computational Biology Research Center (CBRC), Tokyo 135-0064, 2Information and Mathematical Science Laboratory, Inc., Department of Life Sciences, Tokyo 112-0012, 3INTEC Systems Institute, Inc., Biobusiness Division, Tokyo 136-0075 and 4Graduate School of Frontier Sciences, Department of Computational Biology, University of Tokyo, Chiba 277-8583, Japan","National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan"],"affiliations":[{"raw_affiliation_string":"National Institute of Advanced Industrial Science and Technology (AIST), Computational Biology Research Center (CBRC), Tokyo 135-0064, 2Information and Mathematical Science Laboratory, Inc., Department of Life Sciences, Tokyo 112-0012, 3INTEC Systems Institute, Inc., Biobusiness Division, Tokyo 136-0075 and 4Graduate School of Frontier Sciences, Department of Computational Biology, University of Tokyo, Chiba 277-8583, Japan","institution_ids":["https://openalex.org/I74801974","https://openalex.org/I73613424"]},{"raw_affiliation_string":"National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan","institution_ids":["https://openalex.org/I73613424"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5015688097"],"corresponding_institution_ids":["https://openalex.org/I73613424"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":3.8805,"has_fulltext":true,"cited_by_count":138,"citation_normalized_percentile":{"value":0.94175864,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"37","issue":"Database","first_page":"D89","last_page":"D92"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8570588827133179},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6760721206665039},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.632142186164856},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.4844203293323517},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4329819083213806},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.31965601444244385},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2470790147781372},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.1478787660598755},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12132039666175842}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8570588827133179},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6760721206665039},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.632142186164856},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.4844203293323517},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4329819083213806},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.31965601444244385},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2470790147781372},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.1478787660598755},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12132039666175842}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkn805","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn805","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D89/3293366/gkn805.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:18948287","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18948287","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2686472","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2686472","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkn805","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn805","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D89/3293366/gkn805.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2086255487.pdf","grobid_xml":"https://content.openalex.org/works/W2086255487.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1553238261","https://openalex.org/W1964907010","https://openalex.org/W1977545829","https://openalex.org/W2007789333","https://openalex.org/W2024829095","https://openalex.org/W2033518550","https://openalex.org/W2034255392","https://openalex.org/W2042881722","https://openalex.org/W2055043387","https://openalex.org/W2070571588","https://openalex.org/W2099275700","https://openalex.org/W2099468911","https://openalex.org/W2112001233","https://openalex.org/W2115836056","https://openalex.org/W2144603545","https://openalex.org/W2149146453","https://openalex.org/W2151804955","https://openalex.org/W2159006685","https://openalex.org/W2916427899","https://openalex.org/W4236236547"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W4380994516","https://openalex.org/W2556260348"],"abstract_inverted_index":{"We":[0],"developed":[1],"a":[2,36,62,67,73,101,124,127,156,164,171,185],"pair":[3],"of":[4,12,18,33,38,42,52,76,93,126,152,159,167,178,188],"databases":[5,84,198],"that":[6],"support":[7],"two":[8,34],"important":[9],"tasks:":[10],"annotation":[11],"anonymous":[13],"RNA":[14,29,45,79,96,183],"transcripts":[15],"and":[16,31,48,71,146,169,190],"discovery":[17],"novel":[19],"non-coding":[20,78,114],"RNAs.":[21],"The":[22,59,98,149,175,197],"database":[23,64],"combo":[24],"is":[25,61,100,155],"called":[26],"the":[27,39,43,49,53,94,153,160,194],"Functional":[28,44,57,95,182],"Database":[30,46],"consists":[32],"databases:":[35],"rewrite":[37,158],"original":[40],"version":[41,51,151,177],"(fRNAdb)":[47],"latest":[50],"UCSC":[54,102,179],"GenomeBrowser":[55,142,180],"for":[56,181],"RNA.":[58],"former":[60,161,195],"sequence":[63],"equipped":[65],"with":[66,106,113,170],"powerful":[68],"search":[69],"function":[70],"hosts":[72],"large":[74,107],"collection":[75],"known/predicted":[77],"sequences":[80,89,168],"acquired":[81],"from":[82],"existing":[83],"as":[85,87,123],"well":[86],"novel/predicted":[88],"reported":[90],"by":[91],"researchers":[92],"Project.":[97],"latter":[99],"Genome":[103],"Browser":[104],"mirror":[105],"additional":[108],"custom":[109],"tracks":[110,189],"specifically":[111],"associated":[112],"elements.":[115],"It":[116],"also":[117],"includes":[118],"several":[119],"functional":[120],"enhancements":[121],"such":[122],"presentation":[125],"common":[128],"secondary":[129],"structure":[130],"prediction":[131],"at":[132,201],"any":[133],"given":[134],"genomic":[135],"window":[136],"<":[137],"or":[138],"=500":[139],"bp.":[140],"Our":[141],"supports":[143],"user":[144],"authentication":[145],"user-specific":[147],"tracks.":[148],"current":[150,176],"fRNAdb":[154],"complete":[157],"version,":[162],"hosting":[163],"larger":[165,186],"number":[166,187],"much":[172],"friendlier":[173],"interface.":[174],"features":[184,192],"richer":[191],"than":[193],"version.":[196],"are":[199],"available":[200],"http://www.ncrna.org/.":[202]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":18},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":11},{"year":2014,"cited_by_count":12},{"year":2013,"cited_by_count":21},{"year":2012,"cited_by_count":17}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
