{"id":"https://openalex.org/W2059325738","doi":"https://doi.org/10.1093/nar/gkn799","title":"PIG--the pathogen interaction gateway","display_name":"PIG--the pathogen interaction gateway","publication_year":2008,"publication_date":"2008-11-05","ids":{"openalex":"https://openalex.org/W2059325738","doi":"https://doi.org/10.1093/nar/gkn799","mag":"2059325738","pmid":"https://pubmed.ncbi.nlm.nih.gov/18984614"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkn799","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn799","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D647/3292274/gkn799.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D647/3292274/gkn799.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090212849","display_name":"Timothy Driscoll","orcid":"https://orcid.org/0000-0002-5119-0372"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"T. Driscoll","raw_affiliation_strings":["Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA","Virginia Bioinformatics Institute and 2Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA","institution_ids":["https://openalex.org/I859038795"]},{"raw_affiliation_string":"Virginia Bioinformatics Institute and 2Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112957220","display_name":"Matthew D. Dyer","orcid":null},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. D. Dyer","raw_affiliation_strings":["Virginia Bioinformatics Institute and 2Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Virginia Bioinformatics Institute and 2Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073142937","display_name":"T. M. Murali","orcid":"https://orcid.org/0000-0003-3688-4672"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"T. M. Murali","raw_affiliation_strings":["Virginia Bioinformatics Institute and 2Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Virginia Bioinformatics Institute and 2Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058609337","display_name":"Bruno Sobral","orcid":"https://orcid.org/0000-0003-3908-577X"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"B. W. Sobral","raw_affiliation_strings":["Virginia Bioinformatics Institute and 2Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Virginia Bioinformatics Institute and 2Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA","institution_ids":["https://openalex.org/I859038795"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I859038795"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":3.4728,"has_fulltext":false,"cited_by_count":61,"citation_normalized_percentile":{"value":0.92988899,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"37","issue":"Database","first_page":"D647","last_page":"D650"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9894000291824341,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9506999850273132,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8732354640960693},{"id":"https://openalex.org/keywords/pathogen","display_name":"Pathogen","score":0.8280537128448486},{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.6347931623458862},{"id":"https://openalex.org/keywords/gateway","display_name":"Gateway (web page)","score":0.5777992010116577},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5740760564804077},{"id":"https://openalex.org/keywords/microbiology","display_name":"Microbiology","score":0.26311206817626953},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.257715106010437},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.1483844518661499},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.12672436237335205}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8732354640960693},{"id":"https://openalex.org/C2776460866","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogen","level":2,"score":0.8280537128448486},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.6347931623458862},{"id":"https://openalex.org/C2777710495","wikidata":"https://www.wikidata.org/wiki/Q5527195","display_name":"Gateway (web page)","level":2,"score":0.5777992010116577},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5740760564804077},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.26311206817626953},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.257715106010437},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.1483844518661499},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.12672436237335205}],"mesh":[{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkn799","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn799","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D647/3292274/gkn799.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:18984614","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18984614","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2686532","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2686532","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:vtechworks.lib.vt.edu:10919/89032","is_oa":true,"landing_page_url":"http://hdl.handle.net/10919/89032","pdf_url":null,"source":{"id":"https://openalex.org/S4306400248","display_name":"VTechWorks (Virginia Tech)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I859038795","host_organization_name":"Virginia Tech","host_organization_lineage":["https://openalex.org/I859038795"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article - Refereed"}],"best_oa_location":{"id":"doi:10.1093/nar/gkn799","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn799","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D647/3292274/gkn799.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.5}],"awards":[{"id":"https://openalex.org/G7271462980","display_name":null,"funder_award_id":"HHSN26620040035C","funder_id":"https://openalex.org/F4320332505","funder_display_name":"U.S. Public Health Service"}],"funders":[{"id":"https://openalex.org/F4320332505","display_name":"U.S. Public Health Service","ror":"https://ror.org/05xf94514"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2059325738.pdf"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W1982428412","https://openalex.org/W2031407766","https://openalex.org/W2061636126","https://openalex.org/W2091448229","https://openalex.org/W2103017472","https://openalex.org/W2130687290","https://openalex.org/W2147714160","https://openalex.org/W2150934340","https://openalex.org/W2155723007","https://openalex.org/W2158700061","https://openalex.org/W2158714788","https://openalex.org/W2161062388","https://openalex.org/W2315135172","https://openalex.org/W2916288174","https://openalex.org/W3145366215"],"related_works":["https://openalex.org/W3180996806","https://openalex.org/W198468377","https://openalex.org/W2000898433","https://openalex.org/W4249674358","https://openalex.org/W4249153632","https://openalex.org/W2068012419","https://openalex.org/W1614430019","https://openalex.org/W2009068171","https://openalex.org/W2319621679","https://openalex.org/W2010202628"],"abstract_inverted_index":{"Protein-protein":[0],"interactions":[1,17],"(PPIs)":[2],"play":[3],"a":[4,11,19,67,81,86,131,135],"vital":[5],"role":[6],"in":[7,10,45,96,109],"initiating":[8],"infection":[9],"number":[12,68],"of":[13,31,54,69],"pathogens.":[14],"Identifying":[15],"which":[16],"allow":[18,120],"pathogen":[20],"to":[21,28,72,116,119],"infect":[22],"its":[23],"host":[24],"can":[25,144],"help":[26],"us":[27],"understand":[29],"methods":[30],"pathogenesis":[32],"and":[33,60,85,105],"provide":[34],"potential":[35],"targets":[36],"for":[37,41,89,121,133],"therapeutics.":[38],"Public":[39],"resources":[40,71],"studying":[42],"host-pathogen":[43,55,62],"systems,":[44],"particular":[46],"PPIs,":[47,56],"are":[48],"scarce.":[49],"To":[50],"facilitate":[51],"the":[52,74,91,102,106,110,125],"study":[53],"we":[57],"have":[58],"collected":[59],"integrated":[61],"PPI":[63],"(HP-PPI)":[64],"data":[65],"from":[66],"public":[70],"create":[73],"Pathogen":[75],"Interaction":[76],"Gateway":[77],"(PIG).":[78],"PIG":[79,97,113,129,143],"provides":[80,114],"text":[82],"based":[83],"search":[84],"BLAST":[87],"interface":[88],"searching":[90],"HP-PPI":[92,137,141],"data.":[93],"Each":[94],"entry":[95],"includes":[98,130],"information":[99],"such":[100],"as":[101],"functional":[103],"annotations":[104],"domains":[107],"present":[108],"interacting":[111],"proteins.":[112],"links":[115],"external":[117],"databases":[118],"easy":[122],"navigation":[123],"among":[124],"various":[126],"websites.":[127],"Additionally,":[128],"tool":[132],"visualizing":[134],"single":[136],"network":[138],"or":[139],"two":[140],"networks.":[142],"be":[145],"accessed":[146],"at":[147],"http://pig.vbi.vt.edu.":[148]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":12}],"updated_date":"2026-05-22T06:13:13.366637","created_date":"2025-10-10T00:00:00"}
