{"id":"https://openalex.org/W2166230389","doi":"https://doi.org/10.1093/nar/gkn777","title":"RTPrimerDB: the portal for real-time PCR primers and probes","display_name":"RTPrimerDB: the portal for real-time PCR primers and probes","publication_year":2008,"publication_date":"2008-10-23","ids":{"openalex":"https://openalex.org/W2166230389","doi":"https://doi.org/10.1093/nar/gkn777","mag":"2166230389","pmid":"https://pubmed.ncbi.nlm.nih.gov/18948285"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkn777","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn777","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D942/3284870/gkn777.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D942/3284870/gkn777.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038097341","display_name":"Steve Lefever","orcid":"https://orcid.org/0000-0002-6936-8239"},"institutions":[{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"S. Lefever","raw_affiliation_strings":["Center for Medical Genetics, Ghent University Hospital, De Pintelaan 185, 9000 Gent, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Medical Genetics, Ghent University Hospital, De Pintelaan 185, 9000 Gent, Belgium","institution_ids":["https://openalex.org/I2801227569"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086580140","display_name":"Jo Vandesompele","orcid":"https://orcid.org/0000-0001-6274-0184"},"institutions":[{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"J. Vandesompele","raw_affiliation_strings":["Center for Medical Genetics, Ghent University Hospital, De Pintelaan 185, 9000 Gent, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Medical Genetics, Ghent University Hospital, De Pintelaan 185, 9000 Gent, Belgium","institution_ids":["https://openalex.org/I2801227569"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032769404","display_name":"Frank Speleman","orcid":"https://orcid.org/0000-0002-6628-8559"},"institutions":[{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"F. Speleman","raw_affiliation_strings":["Center for Medical Genetics, Ghent University Hospital, De Pintelaan 185, 9000 Gent, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Medical Genetics, Ghent University Hospital, De Pintelaan 185, 9000 Gent, Belgium","institution_ids":["https://openalex.org/I2801227569"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5072598822","display_name":"Filip Pattyn","orcid":"https://orcid.org/0000-0003-0858-6651"},"institutions":[{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"F. Pattyn","raw_affiliation_strings":["Center for Medical Genetics, Ghent University Hospital, De Pintelaan 185, 9000 Gent, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Medical Genetics, Ghent University Hospital, De Pintelaan 185, 9000 Gent, Belgium","institution_ids":["https://openalex.org/I2801227569"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5072598822"],"corresponding_institution_ids":["https://openalex.org/I2801227569"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":5.4753,"has_fulltext":true,"cited_by_count":148,"citation_normalized_percentile":{"value":0.96624223,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":100},"biblio":{"volume":"37","issue":"Database","first_page":"D942","last_page":"D945"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9882000088691711,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9846000075340271,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/refseq","display_name":"RefSeq","score":0.8550230264663696},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.638128399848938},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5699695348739624},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.552902340888977},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.5098556876182556},{"id":"https://openalex.org/keywords/primer","display_name":"Primer (cosmetics)","score":0.4876371920108795},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4786621034145355},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.4505218267440796},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.43851372599601746},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.32317355275154114},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.25845301151275635},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1993037462234497},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1272660195827484}],"concepts":[{"id":"https://openalex.org/C151810110","wikidata":"https://www.wikidata.org/wiki/Q7307074","display_name":"RefSeq","level":4,"score":0.8550230264663696},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.638128399848938},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5699695348739624},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.552902340888977},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.5098556876182556},{"id":"https://openalex.org/C2777563447","wikidata":"https://www.wikidata.org/wiki/Q7243397","display_name":"Primer (cosmetics)","level":2,"score":0.4876371920108795},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4786621034145355},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.4505218267440796},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.43851372599601746},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.32317355275154114},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.25845301151275635},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1993037462234497},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1272660195827484},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015345","descriptor_name":"Oligonucleotide Probes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015345","descriptor_name":"Oligonucleotide Probes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015345","descriptor_name":"Oligonucleotide Probes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016133","descriptor_name":"Polymerase Chain Reaction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016133","descriptor_name":"Polymerase Chain Reaction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016133","descriptor_name":"Polymerase Chain Reaction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/gkn777","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn777","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D942/3284870/gkn777.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:18948285","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18948285","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.324.5213","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.324.5213","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/37/suppl_1/D942.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.434.6737","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.434.6737","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.gene-quantification.de/lefever-et-al-2009.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.778.4175","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.778.4175","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/ae/f6/gkn777.PMC2686610.pdf","raw_type":"text"},{"id":"pmh:oai:archive.ugent.be:873793","is_oa":true,"landing_page_url":"http://hdl.handle.net/1854/LU-873793","pdf_url":null,"source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 0305-1048","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:2686610","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2686610","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkn777","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn777","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D942/3284870/gkn777.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.49000000953674316,"display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2166230389.pdf","grobid_xml":"https://content.openalex.org/works/W2166230389.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W2050554833","https://openalex.org/W2107580398","https://openalex.org/W2107903949","https://openalex.org/W2118615056","https://openalex.org/W2138581811","https://openalex.org/W2142966824","https://openalex.org/W2168783124","https://openalex.org/W2400250419","https://openalex.org/W2415456213","https://openalex.org/W2740984310","https://openalex.org/W4206724286","https://openalex.org/W4207034695","https://openalex.org/W4320800138"],"related_works":["https://openalex.org/W2173732482","https://openalex.org/W2167922509","https://openalex.org/W4388652965","https://openalex.org/W2107903949","https://openalex.org/W12006945","https://openalex.org/W4386739095","https://openalex.org/W1981194976","https://openalex.org/W2377389766","https://openalex.org/W2042160423","https://openalex.org/W2089855844"],"abstract_inverted_index":{"RTPrimerDB":[0,15,119,152],"(http://www.rtprimerdb.org)":[1],"is":[2,94,128,137,153],"a":[3,64,154],"freely":[4],"accessible":[5],"database":[6,93],"and":[7,31,50,70,80,86,108,115,123,136,147,159],"analysis":[8],"tool":[9],"for":[10,105,139,157],"real-time":[11,162],"quantitative":[12],"PCR":[13,163],"assays.":[14,164],"includes":[16],"records":[17],"with":[18,96],"user":[19,75],"submitted":[20],"assays":[21,104],"that":[22,54],"are":[23,61,120],"linked":[24,95],"to":[25,46,51,66,82,99],"genome":[26],"information":[27],"from":[28],"reference":[29,97],"databases":[30,98],"quality":[32],"controlled":[33],"using":[34],"an":[35,131],"in":[36,112,118,141],"silico":[37],"assay":[38],"evaluation":[39,43,90],"system.":[40],"The":[41,92,126],"primer":[42,69],"tools":[44],"intended":[45],"assess":[47],"the":[48,58,101,142],"specificity":[49],"detect":[52],"features":[53],"could":[55],"negatively":[56],"affect":[57],"amplification":[59],"efficiency":[60],"combined":[62],"into":[63],"pipeline":[65],"test":[67],"custom-designed":[68],"probe":[71],"sequences.":[72],"An":[73],"improved":[74],"feedback":[76],"system":[77,135],"guides":[78],"users":[79],"submitters":[81],"enter":[83],"practical":[84],"remarks":[85],"details":[87],"about":[88],"experimental":[89],"analyses.":[91],"allow":[100],"submission":[102],"of":[103],"all":[106],"genes":[107],"organisms":[109],"officially":[110],"registered":[111],"Entrez":[113],"Gene":[114],"RefSeq.":[116],"Records":[117],"assigned":[121],"unique":[122],"stable":[124],"identifiers.":[125],"content":[127],"provided":[129],"via":[130],"interactive":[132],"web-based":[133],"search":[134],"available":[138],"download":[140],"recently":[143],"developed":[144],"RDML":[145],"format":[146],"as":[148],"bulk":[149],"export":[150],"file.":[151],"one-stop":[155],"portal":[156],"high-quality":[158],"highly":[160],"annotated":[161]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":2},{"year":2020,"cited_by_count":13},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":11},{"year":2015,"cited_by_count":11},{"year":2014,"cited_by_count":12},{"year":2013,"cited_by_count":18},{"year":2012,"cited_by_count":9}],"updated_date":"2026-05-12T08:28:47.272897","created_date":"2025-10-10T00:00:00"}
