{"id":"https://openalex.org/W2166406784","doi":"https://doi.org/10.1093/nar/gkn757","title":"DOOR: a database for prokaryotic operons","display_name":"DOOR: a database for prokaryotic operons","publication_year":2008,"publication_date":"2008-11-06","ids":{"openalex":"https://openalex.org/W2166406784","doi":"https://doi.org/10.1093/nar/gkn757","mag":"2166406784","pmid":"https://pubmed.ncbi.nlm.nih.gov/18988623"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkn757","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn757","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D459/16758078/gkn757.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D459/16758078/gkn757.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110127468","display_name":"Fenglou Mao","orcid":null},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]},{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fenglou Mao","raw_affiliation_strings":["Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602, USA","Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, and Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA and 2DOE BioEnergy Science Center (BESC), Oak Ridge National Laboratory (ORNL), Oak Ridge, Tennessee"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602, USA","institution_ids":["https://openalex.org/I165733156"]},{"raw_affiliation_string":"Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, and Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA and 2DOE BioEnergy Science Center (BESC), Oak Ridge National Laboratory (ORNL), Oak Ridge, Tennessee","institution_ids":["https://openalex.org/I1289243028","https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053687986","display_name":"Phuongan Dam","orcid":null},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]},{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Phuongan Dam","raw_affiliation_strings":["Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, and Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA and 2DOE BioEnergy Science Center (BESC), Oak Ridge National Laboratory (ORNL), Oak Ridge, Tennessee"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, and Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA and 2DOE BioEnergy Science Center (BESC), Oak Ridge National Laboratory (ORNL), Oak Ridge, Tennessee","institution_ids":["https://openalex.org/I1289243028","https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077667719","display_name":"Jacky Chou","orcid":null},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]},{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jacky Chou","raw_affiliation_strings":["Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, and Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA and 2DOE BioEnergy Science Center (BESC), Oak Ridge National Laboratory (ORNL), Oak Ridge, Tennessee"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, and Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA and 2DOE BioEnergy Science Center (BESC), Oak Ridge National Laboratory (ORNL), Oak Ridge, Tennessee","institution_ids":["https://openalex.org/I1289243028","https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026918414","display_name":"Victor Olman","orcid":null},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]},{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Victor Olman","raw_affiliation_strings":["Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, and Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA and 2DOE BioEnergy Science Center (BESC), Oak Ridge National Laboratory (ORNL), Oak Ridge, Tennessee"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, and Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA and 2DOE BioEnergy Science Center (BESC), Oak Ridge National Laboratory (ORNL), Oak Ridge, Tennessee","institution_ids":["https://openalex.org/I1289243028","https://openalex.org/I165733156"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020171946","display_name":"Ying Xu","orcid":"https://orcid.org/0000-0002-7856-3343"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]},{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ying Xu","raw_affiliation_strings":["Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, and Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA and 2DOE BioEnergy Science Center (BESC), Oak Ridge National Laboratory (ORNL), Oak Ridge, Tennessee"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, and Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA and 2DOE BioEnergy Science Center (BESC), Oak Ridge National Laboratory (ORNL), Oak Ridge, Tennessee","institution_ids":["https://openalex.org/I1289243028","https://openalex.org/I165733156"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5020171946"],"corresponding_institution_ids":["https://openalex.org/I1289243028","https://openalex.org/I165733156"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":7.8607,"has_fulltext":false,"cited_by_count":351,"citation_normalized_percentile":{"value":0.98146709,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"37","issue":"suppl_1","first_page":"D459","last_page":"D463"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/operon","display_name":"Operon","score":0.9082896709442139},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.6190447211265564},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5794438719749451},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5247809290885925},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4846673309803009},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.34498676657676697},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3415730595588684},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.30447065830230713}],"concepts":[{"id":"https://openalex.org/C203075996","wikidata":"https://www.wikidata.org/wiki/Q139677","display_name":"Operon","level":4,"score":0.9082896709442139},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.6190447211265564},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5794438719749451},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5247809290885925},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4846673309803009},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.34498676657676697},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3415730595588684},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.30447065830230713},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D009876","descriptor_name":"Operon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009876","descriptor_name":"Operon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009876","descriptor_name":"Operon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020745","descriptor_name":"Genome, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020745","descriptor_name":"Genome, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020745","descriptor_name":"Genome, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/gkn757","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn757","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D459/16758078/gkn757.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:18988623","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18988623","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.1008.8172","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.1008.8172","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/37/suppl_1/D459.full.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.585.759","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.585.759","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/37/suppl_1/D459.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.777.6715","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.777.6715","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/fc/38/gkn757.PMC2686520.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.993.8429","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.993.8429","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2008/11/06/nar.gkn757.full.pdf","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:2686520","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2686520","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkn757","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn757","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D459/16758078/gkn757.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W1479863711","https://openalex.org/W1986105390","https://openalex.org/W2029112298","https://openalex.org/W2055109879","https://openalex.org/W2101292724","https://openalex.org/W2109621905","https://openalex.org/W2127057035","https://openalex.org/W2145091349","https://openalex.org/W2148973980","https://openalex.org/W2154454968","https://openalex.org/W3148190347","https://openalex.org/W4255206353"],"related_works":["https://openalex.org/W1608194938","https://openalex.org/W2572774164","https://openalex.org/W1964685767","https://openalex.org/W2111346700","https://openalex.org/W1985756322","https://openalex.org/W2061086355","https://openalex.org/W1541592150","https://openalex.org/W2741414450","https://openalex.org/W2987420353","https://openalex.org/W1491897707"],"abstract_inverted_index":{"We":[0,188],"present":[1],"a":[2,44,60,84,88,109,113,125,136,146,173,193],"database":[3,51,82,107,134,162,171],"DOOR":[4,23,50,191],"(Database":[5],"for":[6,54,87,103,112,138,158,165],"prOkaryotic":[7],"OpeRons)":[8],"containing":[9],"computationally":[10],"predicted":[11,25],"operons":[12,21,53,93,117,164],"of":[13,62,71,130,145,149,185],"all":[14],"the":[15,20,36,49,72,79,81,106,133,142,161,170,183,186],"sequenced":[16],"prokaryotic":[17,56],"genomes.":[18],"All":[19],"in":[22,75,141],"are":[24],"using":[26,153],"our":[27],"own":[28],"prediction":[29,41],"program,":[30],"which":[31,204],"was":[32],"ranked":[33],"to":[34,65,90,115,124,177,196],"be":[35,206],"best":[37],"among":[38],"14":[39],"operon":[40],"programs":[42],"by":[43],"recent":[45],"independent":[46],"review.":[47],"Currently,":[48],"contains":[52],"675":[55],"genomes,":[57],"and":[58,69,94,122,182,202],"supports":[59],"number":[61],"search":[63,85,110],"capabilities":[64],"facilitate":[66,178],"easy":[67],"access":[68],"utilization":[70],"information":[73,96],"stored":[74],"it.":[76],"(1)":[77],"Querying":[78],"database:":[80],"provides":[83,108,135,172,192],"capability":[86,111,137],"user":[89,114],"find":[91,116],"desired":[92],"associated":[95],"through":[97],"multiple":[98],"querying":[99],"methods.":[100],"(2)":[101],"Searching":[102],"similar":[104,120],"operons:":[105],"that":[118,190],"have":[119],"composition":[121],"structure":[123],"query":[126],"operon.":[127],"(3)":[128],"Prediction":[129],"cis-regulatory":[131],"motifs:":[132],"motif":[139],"identification":[140],"promoter":[143],"regions":[144],"user-specified":[147],"group":[148],"possibly":[150],"coregulated":[151],"operons,":[152],"motif-finding":[154],"tools.":[155],"(4)":[156],"Operons":[157],"RNA":[159,166],"genes:":[160],"includes":[163],"genes.":[167],"(5)":[168],"OperonWiki:":[169],"wiki":[174],"page":[175],"(OperonWiki)":[176],"interactions":[179],"between":[180],"users":[181],"developer":[184],"database.":[187],"believe":[189],"useful":[194],"resource":[195],"many":[197],"biologists":[198],"working":[199],"on":[200],"bacteria":[201],"archaea,":[203],"can":[205],"accessed":[207],"at":[208],"http://csbl1.bmb.uga.edu/OperonDB.":[209]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":14},{"year":2020,"cited_by_count":24},{"year":2019,"cited_by_count":22},{"year":2018,"cited_by_count":34},{"year":2017,"cited_by_count":23},{"year":2016,"cited_by_count":37},{"year":2015,"cited_by_count":23},{"year":2014,"cited_by_count":27},{"year":2013,"cited_by_count":37},{"year":2012,"cited_by_count":31}],"updated_date":"2026-05-20T08:49:12.498775","created_date":"2025-10-10T00:00:00"}