{"id":"https://openalex.org/W1999084705","doi":"https://doi.org/10.1093/nar/gkn731","title":"PTM-Switchboard\u2014a database of posttranslational modifications of transcription factors, the mediating enzymes and target genes","display_name":"PTM-Switchboard\u2014a database of posttranslational modifications of transcription factors, the mediating enzymes and target genes","publication_year":2008,"publication_date":"2008-10-15","ids":{"openalex":"https://openalex.org/W1999084705","doi":"https://doi.org/10.1093/nar/gkn731","mag":"1999084705","pmid":"https://pubmed.ncbi.nlm.nih.gov/18927104"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkn731","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn731","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D66/16757776/gkn731.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D66/16757776/gkn731.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018169292","display_name":"Logan J. Everett","orcid":"https://orcid.org/0000-0002-9713-6099"},"institutions":[{"id":"https://openalex.org/I4210127693","display_name":"Penn Center for AIDS Research","ror":"https://ror.org/047939x15","country_code":"US","type":"facility","lineage":["https://openalex.org/I102322052","https://openalex.org/I1335321130","https://openalex.org/I4210127693","https://openalex.org/I79576946"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Logan Everett","raw_affiliation_strings":["Penn Center for Bioinformatics, Department of Genetics and Department of Computer Science, University of Pennsylvania, Philadelphia, PA, USA. loganje@mail.med.upenn.edu","Penn Center for Bioinformatics, Department of Genetics and Department of Computer Science, University of Pennsylvania, Philadelphia, PA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Penn Center for Bioinformatics, Department of Genetics and Department of Computer Science, University of Pennsylvania, Philadelphia, PA, USA. loganje@mail.med.upenn.edu","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Penn Center for Bioinformatics, Department of Genetics and Department of Computer Science, University of Pennsylvania, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I4210127693","https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022777690","display_name":"Antony Vo","orcid":null},"institutions":[{"id":"https://openalex.org/I4210127693","display_name":"Penn Center for AIDS Research","ror":"https://ror.org/047939x15","country_code":"US","type":"facility","lineage":["https://openalex.org/I102322052","https://openalex.org/I1335321130","https://openalex.org/I4210127693","https://openalex.org/I79576946"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Antony Vo","raw_affiliation_strings":["Penn Center for Bioinformatics, Department of Genetics and 2 Department of Computer Science, University of Pennsylvania, Philadelphia, PA, USA","Penn Center for Bioinformatics, Department of Genetics and 2Department of Computer Science, University of Pennsylvania, Philadelphia, PA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Penn Center for Bioinformatics, Department of Genetics and 2 Department of Computer Science, University of Pennsylvania, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I4210127693","https://openalex.org/I79576946"]},{"raw_affiliation_string":"Penn Center for Bioinformatics, Department of Genetics and 2Department of Computer Science, University of Pennsylvania, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011962029","display_name":"Sridhar Hannenhalli","orcid":"https://orcid.org/0000-0001-9603-7569"},"institutions":[{"id":"https://openalex.org/I4210127693","display_name":"Penn Center for AIDS Research","ror":"https://ror.org/047939x15","country_code":"US","type":"facility","lineage":["https://openalex.org/I102322052","https://openalex.org/I1335321130","https://openalex.org/I4210127693","https://openalex.org/I79576946"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sridhar Hannenhalli","raw_affiliation_strings":["Penn Center for Bioinformatics, Department of Genetics and 2 Department of Computer Science, University of Pennsylvania, Philadelphia, PA, USA","Penn Center for Bioinformatics, Department of Genetics and 2Department of Computer Science, University of Pennsylvania, Philadelphia, PA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Penn Center for Bioinformatics, Department of Genetics and 2 Department of Computer Science, University of Pennsylvania, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I4210127693","https://openalex.org/I79576946"]},{"raw_affiliation_string":"Penn Center for Bioinformatics, Department of Genetics and 2Department of Computer Science, University of Pennsylvania, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I79576946"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5018169292"],"corresponding_institution_ids":["https://openalex.org/I4210127693","https://openalex.org/I79576946"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.0397,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.74419756,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"37","issue":"suppl_1","first_page":"D66","last_page":"D71"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.745356559753418},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.6939622759819031},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.640379786491394},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5645531415939331},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.4968245327472687},{"id":"https://openalex.org/keywords/saccharomyces-cerevisiae","display_name":"Saccharomyces cerevisiae","score":0.44812649488449097},{"id":"https://openalex.org/keywords/transcription","display_name":"Transcription (linguistics)","score":0.41652777791023254},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3799673318862915},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.17346587777137756}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.745356559753418},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.6939622759819031},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.640379786491394},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5645531415939331},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.4968245327472687},{"id":"https://openalex.org/C2777576037","wikidata":"https://www.wikidata.org/wiki/Q719725","display_name":"Saccharomyces cerevisiae","level":3,"score":0.44812649488449097},{"id":"https://openalex.org/C179926584","wikidata":"https://www.wikidata.org/wiki/Q207714","display_name":"Transcription (linguistics)","level":2,"score":0.41652777791023254},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3799673318862915},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.17346587777137756},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015966","descriptor_name":"Gene Expression Regulation, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015966","descriptor_name":"Gene Expression Regulation, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015966","descriptor_name":"Gene Expression Regulation, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015966","descriptor_name":"Gene Expression Regulation, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020928","descriptor_name":"Mitogen-Activated Protein Kinases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020928","descriptor_name":"Mitogen-Activated Protein Kinases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020928","descriptor_name":"Mitogen-Activated Protein Kinases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020928","descriptor_name":"Mitogen-Activated Protein Kinases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkn731","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn731","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D66/16757776/gkn731.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:18927104","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18927104","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2686453","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2686453","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkn731","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn731","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D66/16757776/gkn731.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G356596184","display_name":null,"funder_award_id":"T32HG000046","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4042646751","display_name":null,"funder_award_id":"R01 GM085226","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G5195527654","display_name":null,"funder_award_id":"R01GM085226","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G6244969601","display_name":null,"funder_award_id":"T32HG000046","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G8412852319","display_name":null,"funder_award_id":"R21GM078203","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1999084705.pdf","grobid_xml":"https://content.openalex.org/works/W1999084705.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W1872324379","https://openalex.org/W1922163249","https://openalex.org/W1969325859","https://openalex.org/W1970681442","https://openalex.org/W1988393300","https://openalex.org/W1989962769","https://openalex.org/W2000945933","https://openalex.org/W2004071559","https://openalex.org/W2006567083","https://openalex.org/W2006783888","https://openalex.org/W2024457909","https://openalex.org/W2051225779","https://openalex.org/W2059651000","https://openalex.org/W2073286776","https://openalex.org/W2084833542","https://openalex.org/W2088359631","https://openalex.org/W2089974552","https://openalex.org/W2094498131","https://openalex.org/W2096217380","https://openalex.org/W2098664089","https://openalex.org/W2102763490","https://openalex.org/W2106647330","https://openalex.org/W2107903949","https://openalex.org/W2111732181","https://openalex.org/W2114136380","https://openalex.org/W2117088067","https://openalex.org/W2118484233","https://openalex.org/W2120423098","https://openalex.org/W2129137060","https://openalex.org/W2143489962","https://openalex.org/W2147054306","https://openalex.org/W2154139219","https://openalex.org/W2156930958","https://openalex.org/W2159482845","https://openalex.org/W2164666853","https://openalex.org/W2167190345","https://openalex.org/W2172251739","https://openalex.org/W2912451784","https://openalex.org/W4243713540","https://openalex.org/W4253661031","https://openalex.org/W4294216483","https://openalex.org/W6639273934"],"related_works":["https://openalex.org/W4315558101","https://openalex.org/W3200271510","https://openalex.org/W63366483","https://openalex.org/W1516770101","https://openalex.org/W1897466773","https://openalex.org/W2357011584","https://openalex.org/W4380882399","https://openalex.org/W2623087137","https://openalex.org/W1509801266","https://openalex.org/W3085090520"],"abstract_inverted_index":{"Gene":[0],"transcription":[1,7],"is":[2,13,78,124],"largely":[3],"regulated":[4,15],"by":[5,16,95,132],"sequence-specific":[6],"factors":[8],"(TFs).":[9],"The":[10,89,105,138,193],"TF":[11],"activity":[12],"significantly":[14],"its":[17],"posttranslational":[18],"modifications":[19],"(PTMs).":[20],"TF-PTMs":[21,47,85],"serve":[22,168],"as":[23],"'molecular":[24],"switchboards'":[25],"that":[26,112],"map":[27],"multiple":[28],"upstream":[29],"signaling":[30],"events,":[31],"in":[32,99],"response":[33],"to":[34,38,75,119,155,169,181],"various":[35],"environmental":[36],"perturbations,":[37],"the":[39,100,113,151,163,165,174,176],"downstream":[40],"transcriptional":[41,87],"events.":[42],"While":[43],"many":[44],"instances":[45,83,98,148],"of":[46,66,81,84,109,115,145],"and":[48,161,184],"their":[49],"effect":[50],"on":[51,126],"gene":[52,117,123,135],"regulation":[53],"have":[54],"been":[55,71],"experimentally":[56,146],"determined,":[57],"a":[58,62,79,121,133,142,157],"systematic":[59],"meta-analysis":[60],"or":[61,128],"quantitative":[63],"model-based":[64],"investigation":[65],"this":[67,93],"process":[68],"has":[69],"not":[70],"undertaken.":[72],"A":[73],"prerequisite":[74],"such":[76,97,111],"analyses":[77],"database":[80,91,106,139,166,177,194],"known":[82],"affecting":[86],"regulation.":[88],"PTM-Switchboard":[90],"meets":[92],"need":[94],"cataloging":[96],"model":[101],"system":[102],"Saccharomyces":[103],"cerevisiae.":[104],"stores":[107],"triplets":[108,188],"genes":[110],"ability":[114],"one":[116,127],"(TF)":[118],"regulate":[120],"target":[122],"dependent":[125],"more":[129],"PTMs":[130],"catalyzed":[131],"third":[134],"(modifying":[136],"enzyme).":[137],"currently":[140],"includes":[141],"large":[143],"sample":[144],"characterized":[147],"curated":[149],"from":[150,190],"literature.":[152],"In":[153,173],"addition":[154],"providing":[156],"framework":[158],"for":[159],"searching":[160],"analyzing":[162],"data,":[164],"will":[167,178,185],"benchmark":[170],"computational":[171,191],"methods.":[172],"future,":[175],"be":[179,196],"expanded":[180],"mammalian":[182],"organisms,":[183],"also":[186],"include":[187],"predicted":[189],"approaches.":[192],"can":[195],"accessed":[197],"at":[198],"http://cagr.pcbi.upenn.edu/PTMswitchboard.":[199]},"counts_by_year":[{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
