{"id":"https://openalex.org/W2164957457","doi":"https://doi.org/10.1093/nar/gkn724","title":"DDBJ dealing with mass data produced by the second generation sequencer","display_name":"DDBJ dealing with mass data produced by the second generation sequencer","publication_year":2008,"publication_date":"2008-10-16","ids":{"openalex":"https://openalex.org/W2164957457","doi":"https://doi.org/10.1093/nar/gkn724","mag":"2164957457"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkn724","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn724","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gkn724","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109611254","display_name":"Hideaki Sugawara","orcid":"https://orcid.org/0000-0002-7905-2481"},"institutions":[{"id":"https://openalex.org/I4210158934","display_name":"Research Organization of Information and Systems","ror":"https://ror.org/04p4e8t29","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210158934"]},{"id":"https://openalex.org/I47232531","display_name":"Bank of Japan","ror":"https://ror.org/04zmdqe71","country_code":"JP","type":"other","lineage":["https://openalex.org/I47232531"]},{"id":"https://openalex.org/I113198587","display_name":"National Institute of Genetics","ror":"https://ror.org/02xg1m795","country_code":"JP","type":"facility","lineage":["https://openalex.org/I113198587","https://openalex.org/I1319490839","https://openalex.org/I4210158934"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"H. Sugawara","raw_affiliation_strings":["Research Organization of Information and Systems, Yata, Mishima 411-8540, Japan","Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics,"],"affiliations":[{"raw_affiliation_string":"Research Organization of Information and Systems, Yata, Mishima 411-8540, Japan","institution_ids":["https://openalex.org/I4210158934"]},{"raw_affiliation_string":"Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics,","institution_ids":["https://openalex.org/I47232531","https://openalex.org/I113198587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049726104","display_name":"Kazuho Ikeo","orcid":"https://orcid.org/0000-0003-2446-6318"},"institutions":[{"id":"https://openalex.org/I113198587","display_name":"National Institute of Genetics","ror":"https://ror.org/02xg1m795","country_code":"JP","type":"facility","lineage":["https://openalex.org/I113198587","https://openalex.org/I1319490839","https://openalex.org/I4210158934"]},{"id":"https://openalex.org/I4210158934","display_name":"Research Organization of Information and Systems","ror":"https://ror.org/04p4e8t29","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210158934"]},{"id":"https://openalex.org/I47232531","display_name":"Bank of Japan","ror":"https://ror.org/04zmdqe71","country_code":"JP","type":"other","lineage":["https://openalex.org/I47232531"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"K. Ikeo","raw_affiliation_strings":["Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics,","Research Organization of Information and Systems, Yata, Mishima 411-8540, Japan"],"affiliations":[{"raw_affiliation_string":"Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics,","institution_ids":["https://openalex.org/I47232531","https://openalex.org/I113198587"]},{"raw_affiliation_string":"Research Organization of Information and Systems, Yata, Mishima 411-8540, Japan","institution_ids":["https://openalex.org/I4210158934"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107809634","display_name":"Satoshi Fukuchi","orcid":"https://orcid.org/0000-0002-5705-3061"},"institutions":[{"id":"https://openalex.org/I47232531","display_name":"Bank of Japan","ror":"https://ror.org/04zmdqe71","country_code":"JP","type":"other","lineage":["https://openalex.org/I47232531"]},{"id":"https://openalex.org/I4210158934","display_name":"Research Organization of Information and Systems","ror":"https://ror.org/04p4e8t29","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210158934"]},{"id":"https://openalex.org/I113198587","display_name":"National Institute of Genetics","ror":"https://ror.org/02xg1m795","country_code":"JP","type":"facility","lineage":["https://openalex.org/I113198587","https://openalex.org/I1319490839","https://openalex.org/I4210158934"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"S. Fukuchi","raw_affiliation_strings":["Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics,","Research Organization of Information and Systems, Yata, Mishima 411-8540, Japan"],"affiliations":[{"raw_affiliation_string":"Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics,","institution_ids":["https://openalex.org/I47232531","https://openalex.org/I113198587"]},{"raw_affiliation_string":"Research Organization of Information and Systems, Yata, Mishima 411-8540, Japan","institution_ids":["https://openalex.org/I4210158934"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012255344","display_name":"T. Gojobori","orcid":null},"institutions":[{"id":"https://openalex.org/I47232531","display_name":"Bank of Japan","ror":"https://ror.org/04zmdqe71","country_code":"JP","type":"other","lineage":["https://openalex.org/I47232531"]},{"id":"https://openalex.org/I4210158934","display_name":"Research Organization of Information and Systems","ror":"https://ror.org/04p4e8t29","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210158934"]},{"id":"https://openalex.org/I113198587","display_name":"National Institute of Genetics","ror":"https://ror.org/02xg1m795","country_code":"JP","type":"facility","lineage":["https://openalex.org/I113198587","https://openalex.org/I1319490839","https://openalex.org/I4210158934"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"T. Gojobori","raw_affiliation_strings":["Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics,","Research Organization of Information and Systems, Yata, Mishima 411-8540, Japan"],"affiliations":[{"raw_affiliation_string":"Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics,","institution_ids":["https://openalex.org/I47232531","https://openalex.org/I113198587"]},{"raw_affiliation_string":"Research Organization of Information and Systems, Yata, Mishima 411-8540, Japan","institution_ids":["https://openalex.org/I4210158934"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015936615","display_name":"Yoshio Tateno","orcid":null},"institutions":[{"id":"https://openalex.org/I113198587","display_name":"National Institute of Genetics","ror":"https://ror.org/02xg1m795","country_code":"JP","type":"facility","lineage":["https://openalex.org/I113198587","https://openalex.org/I1319490839","https://openalex.org/I4210158934"]},{"id":"https://openalex.org/I47232531","display_name":"Bank of Japan","ror":"https://ror.org/04zmdqe71","country_code":"JP","type":"other","lineage":["https://openalex.org/I47232531"]},{"id":"https://openalex.org/I4210158934","display_name":"Research Organization of Information and Systems","ror":"https://ror.org/04p4e8t29","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210158934"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Y. Tateno","raw_affiliation_strings":["Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics,","Research Organization of Information and Systems, Yata, Mishima 411-8540, Japan"],"affiliations":[{"raw_affiliation_string":"Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics,","institution_ids":["https://openalex.org/I47232531","https://openalex.org/I113198587"]},{"raw_affiliation_string":"Research Organization of Information and Systems, Yata, Mishima 411-8540, Japan","institution_ids":["https://openalex.org/I4210158934"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5015936615"],"corresponding_institution_ids":["https://openalex.org/I113198587","https://openalex.org/I4210158934","https://openalex.org/I47232531"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.93,"has_fulltext":false,"cited_by_count":29,"citation_normalized_percentile":{"value":0.8588108,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"37","issue":"Database","first_page":"D16","last_page":"D18"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12134","display_name":"Insect symbiosis and bacterial influences","score":0.9872000217437744,"subfield":{"id":"https://openalex.org/subfields/1109","display_name":"Insect Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8811087608337402},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5529390573501587},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4846063554286957},{"id":"https://openalex.org/keywords/shotgun-sequencing","display_name":"Shotgun sequencing","score":0.4540853798389435},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.32692480087280273},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3240467309951782},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.19263103604316711},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13185694813728333}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8811087608337402},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5529390573501587},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4846063554286957},{"id":"https://openalex.org/C101985253","wikidata":"https://www.wikidata.org/wiki/Q1073526","display_name":"Shotgun sequencing","level":4,"score":0.4540853798389435},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.32692480087280273},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3240467309951782},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.19263103604316711},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13185694813728333}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/nar/gkn724","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn724","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2686496","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2686496","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkn724","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn724","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.4099999964237213}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W1966936568","https://openalex.org/W2098115340","https://openalex.org/W2113649367","https://openalex.org/W2127230663","https://openalex.org/W2127415562","https://openalex.org/W2128605601","https://openalex.org/W2142642738","https://openalex.org/W2165460636","https://openalex.org/W2168909179"],"related_works":["https://openalex.org/W1841715584","https://openalex.org/W2791852654","https://openalex.org/W4229997256","https://openalex.org/W3103414575","https://openalex.org/W3015172208","https://openalex.org/W1989359751","https://openalex.org/W310196388","https://openalex.org/W4283169100","https://openalex.org/W2804963910","https://openalex.org/W2002410252"],"abstract_inverted_index":{"DNA":[0],"Data":[1],"Bank":[2],"of":[3,38,73,89,101,104],"Japan":[4],"(DDBJ)":[5],"(http://www.ddbj.nig.ac.jp)":[6],"collected":[7,53],"and":[8,44,54,76,95,107],"released":[9,55,96],"2":[10],"368":[11],"110":[12],"entries":[13],"or":[14],"1":[15],"415":[16],"106":[17],"598":[18],"bases":[19],"in":[20,31,59,80],"the":[21,86],"period":[22,33],"from":[23,49],"July":[24],"2007":[25],"to":[26],"June":[27],"2008.":[28],"The":[29,68],"releases":[30],"this":[32,50],"include":[34],"genome":[35],"scale":[36],"data":[37,58],"Bombyx":[39],"mori,":[40],"Oryzas":[41],"latipes,":[42],"Drosophila":[43],"Lotus":[45],"japonicus.":[46],"In":[47],"addition,":[48],"year":[51],"we":[52,92],"trace":[56],"archive":[57],"collaboration":[60],"with":[61,85],"National":[62],"Center":[63],"for":[64],"Biotechnology":[65],"Information":[66],"(NCBI).":[67],"first":[69],"release":[70],"contains":[71],"those":[72],"O.":[74],"latipes":[75],"bacterial":[77],"meta":[78],"genomes":[79],"human":[81],"gut.":[82],"To":[83],"cope":[84],"current":[87],"progress":[88],"sequencing":[90],"technology,":[91],"also":[93],"accepted":[94],"more":[97],"than":[98],"100":[99],"million":[100],"short":[102],"reads":[103],"parasitic":[105],"protozoa":[106],"their":[108],"hosts":[109],"that":[110],"were":[111],"produced":[112],"by":[113],"using":[114],"a":[115],"Solexa":[116],"sequencer.":[117]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
