{"id":"https://openalex.org/W2129311708","doi":"https://doi.org/10.1093/nar/gkn696","title":"KineticDB: a database of protein folding kinetics","display_name":"KineticDB: a database of protein folding kinetics","publication_year":2008,"publication_date":"2008-10-09","ids":{"openalex":"https://openalex.org/W2129311708","doi":"https://doi.org/10.1093/nar/gkn696","mag":"2129311708","pmid":"https://pubmed.ncbi.nlm.nih.gov/18842631"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkn696","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn696","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D342/3243645/gkn696.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D342/3243645/gkn696.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003443383","display_name":"Natalya S. Bogatyreva","orcid":"https://orcid.org/0000-0002-1719-1136"},"institutions":[{"id":"https://openalex.org/I4210137602","display_name":"Institute of Protein Research","ror":"https://ror.org/0489f0s93","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210129690","https://openalex.org/I4210137602"]},{"id":"https://openalex.org/I4210155801","display_name":"Institute of Cell Biophysics","ror":"https://ror.org/05gbnpz65","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210129690","https://openalex.org/I4210155801"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"N. S. Bogatyreva","raw_affiliation_strings":["Institute of Protein Research and Institute of Cell Biophysics, Russian Academy of Sciences, Pushchino, Moscow Region, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Protein Research and Institute of Cell Biophysics, Russian Academy of Sciences, Pushchino, Moscow Region, Russia","institution_ids":["https://openalex.org/I4210155801","https://openalex.org/I4210137602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112006234","display_name":"A. A. Osypov","orcid":null},"institutions":[{"id":"https://openalex.org/I4210137602","display_name":"Institute of Protein Research","ror":"https://ror.org/0489f0s93","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210129690","https://openalex.org/I4210137602"]},{"id":"https://openalex.org/I4210155801","display_name":"Institute of Cell Biophysics","ror":"https://ror.org/05gbnpz65","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210129690","https://openalex.org/I4210155801"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"A. A. Osypov","raw_affiliation_strings":["Institute of Protein Research and 2Institute of Cell Biophysics, Russian Academy of Sciences, Pushchino, Moscow Region, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Protein Research and 2Institute of Cell Biophysics, Russian Academy of Sciences, Pushchino, Moscow Region, Russia","institution_ids":["https://openalex.org/I4210155801","https://openalex.org/I4210137602"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028642432","display_name":"Dmitry N. Ivankov","orcid":"https://orcid.org/0000-0002-8224-4118"},"institutions":[{"id":"https://openalex.org/I4210137602","display_name":"Institute of Protein Research","ror":"https://ror.org/0489f0s93","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210129690","https://openalex.org/I4210137602"]},{"id":"https://openalex.org/I4210155801","display_name":"Institute of Cell Biophysics","ror":"https://ror.org/05gbnpz65","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210129690","https://openalex.org/I4210155801"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"D. N. Ivankov","raw_affiliation_strings":["Institute of Protein Research and 2Institute of Cell Biophysics, Russian Academy of Sciences, Pushchino, Moscow Region, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Protein Research and 2Institute of Cell Biophysics, Russian Academy of Sciences, Pushchino, Moscow Region, Russia","institution_ids":["https://openalex.org/I4210155801","https://openalex.org/I4210137602"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.8081,"has_fulltext":false,"cited_by_count":63,"citation_normalized_percentile":{"value":0.90794522,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"37","issue":"Database","first_page":"D342","last_page":"D346"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-folding","display_name":"Protein folding","score":0.7564255595207214},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.7076324224472046},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.575839102268219},{"id":"https://openalex.org/keywords/kinetics","display_name":"Kinetics","score":0.5324761867523193},{"id":"https://openalex.org/keywords/phi-value-analysis","display_name":"Phi value analysis","score":0.5279048085212708},{"id":"https://openalex.org/keywords/disulfide-bond","display_name":"Disulfide bond","score":0.5149887204170227},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5017533302307129},{"id":"https://openalex.org/keywords/protein-domain","display_name":"Protein domain","score":0.4277816414833069},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.41452154517173767},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.34077417850494385},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3341193199157715},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.21889200806617737},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.12908145785331726},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.06381002068519592}],"concepts":[{"id":"https://openalex.org/C204328495","wikidata":"https://www.wikidata.org/wiki/Q847556","display_name":"Protein folding","level":2,"score":0.7564255595207214},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.7076324224472046},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.575839102268219},{"id":"https://openalex.org/C148898269","wikidata":"https://www.wikidata.org/wiki/Q1108792","display_name":"Kinetics","level":2,"score":0.5324761867523193},{"id":"https://openalex.org/C162203774","wikidata":"https://www.wikidata.org/wiki/Q7181581","display_name":"Phi value analysis","level":3,"score":0.5279048085212708},{"id":"https://openalex.org/C27256138","wikidata":"https://www.wikidata.org/wiki/Q1230226","display_name":"Disulfide bond","level":2,"score":0.5149887204170227},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5017533302307129},{"id":"https://openalex.org/C144292202","wikidata":"https://www.wikidata.org/wiki/Q898273","display_name":"Protein domain","level":3,"score":0.4277816414833069},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.41452154517173767},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.34077417850494385},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3341193199157715},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.21889200806617737},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.12908145785331726},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.06381002068519592},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkn696","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn696","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D342/3243645/gkn696.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:18842631","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18842631","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2686587","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2686587","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkn696","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn696","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D342/3243645/gkn696.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306082","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W1501210482","https://openalex.org/W1970966964","https://openalex.org/W1974824181","https://openalex.org/W1977765491","https://openalex.org/W1981102765","https://openalex.org/W1987696643","https://openalex.org/W1989297730","https://openalex.org/W1990644981","https://openalex.org/W1998896275","https://openalex.org/W2018312454","https://openalex.org/W2023083682","https://openalex.org/W2032311486","https://openalex.org/W2042764187","https://openalex.org/W2048452697","https://openalex.org/W2053197719","https://openalex.org/W2059827338","https://openalex.org/W2082260955","https://openalex.org/W2085277871","https://openalex.org/W2089597488","https://openalex.org/W2092227167","https://openalex.org/W2098187773","https://openalex.org/W2112032866","https://openalex.org/W2132465010","https://openalex.org/W2136909068","https://openalex.org/W2139433006","https://openalex.org/W2164617854","https://openalex.org/W2165222310","https://openalex.org/W4256395558"],"related_works":["https://openalex.org/W2089397569","https://openalex.org/W2084642783","https://openalex.org/W2065971324","https://openalex.org/W2021456587","https://openalex.org/W2171985964","https://openalex.org/W1527006776","https://openalex.org/W2037346057","https://openalex.org/W2036898162","https://openalex.org/W1855896685","https://openalex.org/W2129311708"],"abstract_inverted_index":{"We":[0],"propose":[1],"here":[2],"KineticDB,":[3],"a":[4,29,52,90,99,163],"systematically":[5,144],"compiled":[6],"database":[7],"of":[8,21,32,42,55,72,111,115,156],"protein":[9,33,43,62,120,157],"folding":[10,34,44,57,63,112,158],"kinetics,":[11],"which":[12],"contains":[13,108],"about":[14,134],"90":[15,135],"unique":[16,136],"proteins.":[17],"The":[18,38,165],"main":[19,68],"goal":[20],"the":[22,56,67,80,106,109,147,153],"KineticDB":[23,107,166],"is":[24,45,152,167],"to":[25,88],"provide":[26,89],"users":[27],"with":[28,60,92],"diverse":[30],"set":[31],"rates":[35,64],"determined":[36],"experimentally.":[37],"search":[39],"for":[40,70],"determinants":[41],"still":[46],"in":[47,98],"progress,":[48],"aimed":[49],"at":[50,169],"obtaining":[51],"new":[53],"understanding":[54],"process.":[58],"Comparison":[59],"experimental":[61],"has":[65],"been":[66,143],"tool":[69],"validation":[71],"both":[73],"theoretical":[74],"models":[75],"and":[76,101,118,138,151],"empirical":[77],"relationships":[78],"during":[79],"last":[81,148],"10":[82,149],"years.":[83],"It":[84,130],"is,":[85],"therefore,":[86],"necessary":[87],"researcher":[91],"as":[93,96,122,124,162],"much":[94],"data":[95,132,160],"possible":[97],"simple":[100],"easy-to-use":[102],"way.":[103],"At":[104],"present,":[105],"results":[110],"kinetics":[113],"measurements":[114],"single-domain":[116],"proteins":[117,137],"separate":[119],"domains":[121],"well":[123],"short":[125],"peptides":[126],"without":[127],"disulfide":[128],"bonds.":[129],"includes":[131],"on":[133],"many":[139],"mutants":[140],"that":[141],"have":[142],"accumulated":[145],"over":[146],"years":[150],"largest":[154],"collection":[155],"kinetic":[159],"presented":[161],"database.":[164],"available":[168],"http://kineticdb.protres.ru/db/index.pl.":[170]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":8},{"year":2012,"cited_by_count":7}],"updated_date":"2026-06-23T13:55:30.953635","created_date":"2025-10-10T00:00:00"}
