{"id":"https://openalex.org/W2041479851","doi":"https://doi.org/10.1093/nar/gkn683","title":"PMAP: databases for analyzing proteolytic events and pathways","display_name":"PMAP: databases for analyzing proteolytic events and pathways","publication_year":2008,"publication_date":"2008-10-08","ids":{"openalex":"https://openalex.org/W2041479851","doi":"https://doi.org/10.1093/nar/gkn683","mag":"2041479851","pmid":"https://pubmed.ncbi.nlm.nih.gov/18842634"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkn683","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn683","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D611/16757443/gkn683.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D611/16757443/gkn683.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054250756","display_name":"Yoshinobu Igarashi","orcid":"https://orcid.org/0000-0001-8636-796X"},"institutions":[{"id":"https://openalex.org/I188891513","display_name":"Sanford Burnham Prebys Medical Discovery Institute","ror":"https://ror.org/03m1g2s55","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I188891513"]},{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yoshinobu Igarashi","raw_affiliation_strings":["The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center, The Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA","University of Connecticut Health Center, Farmington, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center, The Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I188891513"]},{"raw_affiliation_string":"University of Connecticut Health Center, Farmington, United States","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051715199","display_name":"Emily Heureux","orcid":null},"institutions":[{"id":"https://openalex.org/I2799424032","display_name":"Discovery Institute","ror":"https://ror.org/05t8s3y29","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2799424032"]},{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Emily Heureux","raw_affiliation_strings":["The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center at The Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA, 2 Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Lavrentieva 10, Novosibirsk 630090, Russia, 3 Center of Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA and 4 Faculty of Information Technology, Monash University, Clayton, Victoria 3800, Australia","University of Connecticut Health Center, Farmington, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center at The Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA, 2 Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Lavrentieva 10, Novosibirsk 630090, Russia, 3 Center of Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA and 4 Faculty of Information Technology, Monash University, Clayton, Victoria 3800, Australia","institution_ids":["https://openalex.org/I2799424032"]},{"raw_affiliation_string":"University of Connecticut Health Center, Farmington, United States","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083351162","display_name":"Kutbuddin S. Doctor","orcid":null},"institutions":[{"id":"https://openalex.org/I2799424032","display_name":"Discovery Institute","ror":"https://ror.org/05t8s3y29","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2799424032"]},{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kutbuddin S. Doctor","raw_affiliation_strings":["The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center at The Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA, 2 Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Lavrentieva 10, Novosibirsk 630090, Russia, 3 Center of Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA and 4 Faculty of Information Technology, Monash University, Clayton, Victoria 3800, Australia","University of Connecticut Health Center, Farmington, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center at The Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA, 2 Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Lavrentieva 10, Novosibirsk 630090, Russia, 3 Center of Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA and 4 Faculty of Information Technology, Monash University, Clayton, Victoria 3800, Australia","institution_ids":["https://openalex.org/I2799424032"]},{"raw_affiliation_string":"University of Connecticut Health Center, Farmington, United States","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032018272","display_name":"Priti Talwar","orcid":"https://orcid.org/0000-0002-6826-581X"},"institutions":[{"id":"https://openalex.org/I2799424032","display_name":"Discovery Institute","ror":"https://ror.org/05t8s3y29","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2799424032"]},{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Priti Talwar","raw_affiliation_strings":["The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center at The Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA, 2 Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Lavrentieva 10, Novosibirsk 630090, Russia, 3 Center of Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA and 4 Faculty of Information Technology, Monash University, Clayton, Victoria 3800, Australia","University of Connecticut Health Center, Farmington, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center at The Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA, 2 Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Lavrentieva 10, Novosibirsk 630090, Russia, 3 Center of Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA and 4 Faculty of Information Technology, Monash University, Clayton, Victoria 3800, Australia","institution_ids":["https://openalex.org/I2799424032"]},{"raw_affiliation_string":"University of Connecticut Health Center, Farmington, United States","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023764461","display_name":"Svetlana Gramatikova","orcid":null},"institutions":[{"id":"https://openalex.org/I2799424032","display_name":"Discovery Institute","ror":"https://ror.org/05t8s3y29","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2799424032"]},{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Svetlana Gramatikova","raw_affiliation_strings":["The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center at The Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA, 2 Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Lavrentieva 10, Novosibirsk 630090, Russia, 3 Center of Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA and 4 Faculty of Information Technology, Monash University, Clayton, Victoria 3800, Australia","University of Connecticut Health Center, Farmington, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center at The Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA, 2 Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Lavrentieva 10, Novosibirsk 630090, Russia, 3 Center of Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA and 4 Faculty of Information Technology, Monash University, Clayton, Victoria 3800, Australia","institution_ids":["https://openalex.org/I2799424032"]},{"raw_affiliation_string":"University of Connecticut Health Center, Farmington, United States","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048625108","display_name":"Kosi Gramatikoff","orcid":null},"institutions":[{"id":"https://openalex.org/I2799424032","display_name":"Discovery Institute","ror":"https://ror.org/05t8s3y29","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2799424032"]},{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kosi Gramatikoff","raw_affiliation_strings":["The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center at The Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA, 2 Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Lavrentieva 10, Novosibirsk 630090, Russia, 3 Center of Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA and 4 Faculty of Information Technology, Monash University, Clayton, Victoria 3800, Australia","University of Connecticut Health Center, Farmington, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center at The Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA, 2 Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Lavrentieva 10, Novosibirsk 630090, Russia, 3 Center of Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA and 4 Faculty of Information Technology, Monash University, Clayton, Victoria 3800, Australia","institution_ids":["https://openalex.org/I2799424032"]},{"raw_affiliation_string":"University of Connecticut Health Center, Farmington, United States","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010498463","display_name":"Ying Zhang","orcid":"https://orcid.org/0000-0001-8759-0194"},"institutions":[{"id":"https://openalex.org/I2799424032","display_name":"Discovery Institute","ror":"https://ror.org/05t8s3y29","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2799424032"]},{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ying Zhang","raw_affiliation_strings":["The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center at The Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA, 2 Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Lavrentieva 10, Novosibirsk 630090, Russia, 3 Center of Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA and 4 Faculty of Information Technology, Monash University, Clayton, Victoria 3800, Australia","University of Connecticut Health Center, Farmington, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center at The Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA, 2 Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Lavrentieva 10, Novosibirsk 630090, Russia, 3 Center of Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA and 4 Faculty of Information Technology, Monash University, Clayton, Victoria 3800, Australia","institution_ids":["https://openalex.org/I2799424032"]},{"raw_affiliation_string":"University of Connecticut Health Center, Farmington, United States","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107139754","display_name":"Michael L. Blinov","orcid":"https://orcid.org/0000-0002-9363-9705"},"institutions":[{"id":"https://openalex.org/I2799424032","display_name":"Discovery Institute","ror":"https://ror.org/05t8s3y29","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2799424032"]},{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Blinov","raw_affiliation_strings":["The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center at The Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA, 2 Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Lavrentieva 10, Novosibirsk 630090, Russia, 3 Center of Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA and 4 Faculty of Information Technology, Monash University, Clayton, Victoria 3800, Australia","University of Connecticut Health Center, Farmington, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center at The Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA, 2 Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Lavrentieva 10, Novosibirsk 630090, Russia, 3 Center of Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA and 4 Faculty of Information Technology, Monash University, Clayton, Victoria 3800, Australia","institution_ids":["https://openalex.org/I2799424032"]},{"raw_affiliation_string":"University of Connecticut Health Center, Farmington, United States","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007538058","display_name":"S. S. Ibragimova","orcid":"https://orcid.org/0000-0003-3886-7702"},"institutions":[{"id":"https://openalex.org/I2799424032","display_name":"Discovery Institute","ror":"https://ror.org/05t8s3y29","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2799424032"]},{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Salmaz S. Ibragimova","raw_affiliation_strings":["The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center at The Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA, 2 Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Lavrentieva 10, Novosibirsk 630090, Russia, 3 Center of Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA and 4 Faculty of Information Technology, Monash University, Clayton, Victoria 3800, Australia","University of Connecticut Health Center, Farmington, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center at The Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA, 2 Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Lavrentieva 10, Novosibirsk 630090, Russia, 3 Center of Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA and 4 Faculty of Information Technology, Monash University, Clayton, Victoria 3800, Australia","institution_ids":["https://openalex.org/I2799424032"]},{"raw_affiliation_string":"University of Connecticut Health Center, Farmington, United States","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083075316","display_name":"Sarah Boyd","orcid":"https://orcid.org/0000-0002-7264-8602"},"institutions":[{"id":"https://openalex.org/I2799424032","display_name":"Discovery Institute","ror":"https://ror.org/05t8s3y29","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2799424032"]},{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sarah Boyd","raw_affiliation_strings":["The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center at The Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA, 2 Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Lavrentieva 10, Novosibirsk 630090, Russia, 3 Center of Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA and 4 Faculty of Information Technology, Monash University, Clayton, Victoria 3800, Australia","University of Connecticut Health Center, Farmington, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center at The Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA, 2 Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Lavrentieva 10, Novosibirsk 630090, Russia, 3 Center of Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA and 4 Faculty of Information Technology, Monash University, Clayton, Victoria 3800, Australia","institution_ids":["https://openalex.org/I2799424032"]},{"raw_affiliation_string":"University of Connecticut Health Center, Farmington, United States","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061307357","display_name":"Boris I. Ratnikov","orcid":"https://orcid.org/0000-0002-7667-6096"},"institutions":[{"id":"https://openalex.org/I2799424032","display_name":"Discovery Institute","ror":"https://ror.org/05t8s3y29","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2799424032"]},{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Boris Ratnikov","raw_affiliation_strings":["The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center at The Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA, 2 Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Lavrentieva 10, Novosibirsk 630090, Russia, 3 Center of Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA and 4 Faculty of Information Technology, Monash University, Clayton, Victoria 3800, Australia","University of Connecticut Health Center, Farmington, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center at The Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA, 2 Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Lavrentieva 10, Novosibirsk 630090, Russia, 3 Center of Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA and 4 Faculty of Information Technology, Monash University, Clayton, Victoria 3800, Australia","institution_ids":["https://openalex.org/I2799424032"]},{"raw_affiliation_string":"University of Connecticut Health Center, Farmington, United States","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032185922","display_name":"Piotr Cieplak","orcid":"https://orcid.org/0000-0003-0700-5691"},"institutions":[{"id":"https://openalex.org/I2799424032","display_name":"Discovery Institute","ror":"https://ror.org/05t8s3y29","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2799424032"]},{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Piotr Cieplak","raw_affiliation_strings":["The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center at The Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA, 2 Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Lavrentieva 10, Novosibirsk 630090, Russia, 3 Center of Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA and 4 Faculty of Information Technology, Monash University, Clayton, Victoria 3800, Australia","University of Connecticut Health Center, Farmington, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center at The Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA, 2 Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Lavrentieva 10, Novosibirsk 630090, Russia, 3 Center of Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA and 4 Faculty of Information Technology, Monash University, Clayton, Victoria 3800, Australia","institution_ids":["https://openalex.org/I2799424032"]},{"raw_affiliation_string":"University of Connecticut Health Center, Farmington, United States","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010671148","display_name":"Adam Godzik","orcid":"https://orcid.org/0000-0002-2425-852X"},"institutions":[{"id":"https://openalex.org/I2799424032","display_name":"Discovery Institute","ror":"https://ror.org/05t8s3y29","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2799424032"]},{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam Godzik","raw_affiliation_strings":["The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center at The Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA, 2 Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Lavrentieva 10, Novosibirsk 630090, Russia, 3 Center of Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA and 4 Faculty of Information Technology, Monash University, Clayton, Victoria 3800, Australia","University of Connecticut Health Center, Farmington, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center at The Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA, 2 Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Lavrentieva 10, Novosibirsk 630090, Russia, 3 Center of Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA and 4 Faculty of Information Technology, Monash University, Clayton, Victoria 3800, Australia","institution_ids":["https://openalex.org/I2799424032"]},{"raw_affiliation_string":"University of Connecticut Health Center, Farmington, United States","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101665641","display_name":"Jeffrey W. Smith","orcid":"https://orcid.org/0000-0002-8691-3470"},"institutions":[{"id":"https://openalex.org/I2799424032","display_name":"Discovery Institute","ror":"https://ror.org/05t8s3y29","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2799424032"]},{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeffrey W. Smith","raw_affiliation_strings":["The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center at The Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA, 2 Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Lavrentieva 10, Novosibirsk 630090, Russia, 3 Center of Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA and 4 Faculty of Information Technology, Monash University, Clayton, Victoria 3800, Australia","University of Connecticut Health Center, Farmington, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center at The Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA, 2 Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Lavrentieva 10, Novosibirsk 630090, Russia, 3 Center of Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA and 4 Faculty of Information Technology, Monash University, Clayton, Victoria 3800, Australia","institution_ids":["https://openalex.org/I2799424032"]},{"raw_affiliation_string":"University of Connecticut Health Center, Farmington, United States","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009605432","display_name":"Andrei L. Osterman","orcid":"https://orcid.org/0000-0002-3810-9824"},"institutions":[{"id":"https://openalex.org/I2799424032","display_name":"Discovery Institute","ror":"https://ror.org/05t8s3y29","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2799424032"]},{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrei L. Osterman","raw_affiliation_strings":["The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center at The Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA, 2 Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Lavrentieva 10, Novosibirsk 630090, Russia, 3 Center of Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA and 4 Faculty of Information Technology, Monash University, Clayton, Victoria 3800, Australia","University of Connecticut Health Center, Farmington, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center at The Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA, 2 Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Lavrentieva 10, Novosibirsk 630090, Russia, 3 Center of Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA and 4 Faculty of Information Technology, Monash University, Clayton, Victoria 3800, Australia","institution_ids":["https://openalex.org/I2799424032"]},{"raw_affiliation_string":"University of Connecticut Health Center, Farmington, United States","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070253714","display_name":"Alexey M. Eroshkin","orcid":"https://orcid.org/0000-0003-2023-4608"},"institutions":[{"id":"https://openalex.org/I2799424032","display_name":"Discovery Institute","ror":"https://ror.org/05t8s3y29","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2799424032"]},{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Alexey M. Eroshkin","raw_affiliation_strings":["The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center at The Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA, 2 Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Lavrentieva 10, Novosibirsk 630090, Russia, 3 Center of Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA and 4 Faculty of Information Technology, Monash University, Clayton, Victoria 3800, Australia","University of Connecticut Health Center, Farmington, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Center on Proteolytic Pathways, The Cancer Research Center and The Inflammatory and Infectious Disease Center at The Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA, 2 Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Lavrentieva 10, Novosibirsk 630090, Russia, 3 Center of Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA and 4 Faculty of Information Technology, Monash University, Clayton, Victoria 3800, Australia","institution_ids":["https://openalex.org/I2799424032"]},{"raw_affiliation_string":"University of Connecticut Health Center, Farmington, United States","institution_ids":["https://openalex.org/I75929689"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5070253714"],"corresponding_institution_ids":["https://openalex.org/I2799424032","https://openalex.org/I75929689"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.4301,"has_fulltext":true,"cited_by_count":63,"citation_normalized_percentile":{"value":0.80336131,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"37","issue":"suppl_1","first_page":"D611","last_page":"D618"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11041","display_name":"Ubiquitin and proteasome pathways","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.903286337852478},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4459451735019684},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3647070825099945},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3476911187171936}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.903286337852478},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4459451735019684},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3647070825099945},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3476911187171936},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010447","descriptor_name":"Peptide Hydrolases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010447","descriptor_name":"Peptide Hydrolases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010447","descriptor_name":"Peptide Hydrolases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010447","descriptor_name":"Peptide Hydrolases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010447","descriptor_name":"Peptide Hydrolases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010447","descriptor_name":"Peptide Hydrolases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkn683","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn683","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D611/16757443/gkn683.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:18842634","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18842634","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2686432","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2686432","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:ark:/13030/qt39v1354f","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:escholarship.org/ark:/13030/qt39v1354f","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/39v1354f","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic acids research, vol 37, iss Database issue","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkn683","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn683","pdf_url":"https://academic.oup.com/nar/article-pdf/37/suppl_1/D611/16757443/gkn683.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.41999998688697815,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G1297182408","display_name":null,"funder_award_id":"RR 020843","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"},{"id":"https://openalex.org/G267399908","display_name":null,"funder_award_id":"CA30199","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G3400225840","display_name":null,"funder_award_id":"U54-RR020843","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"},{"id":"https://openalex.org/G3602721058","display_name":"Center on Proteolytic Pathways(RMI)","funder_award_id":"3u54rr020843-05s1","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7596613463","display_name":null,"funder_award_id":"CA108959","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337375","display_name":"National Center for Research Resources","ror":"https://ror.org/04pw6fb54"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2041479851.pdf","grobid_xml":"https://content.openalex.org/works/W2041479851.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W1513332069","https://openalex.org/W1554313068","https://openalex.org/W1973130935","https://openalex.org/W1979842763","https://openalex.org/W1994016632","https://openalex.org/W2016484384","https://openalex.org/W2022333738","https://openalex.org/W2030060549","https://openalex.org/W2039839254","https://openalex.org/W2055043387","https://openalex.org/W2056681619","https://openalex.org/W2065283382","https://openalex.org/W2076048958","https://openalex.org/W2084465075","https://openalex.org/W2097817417","https://openalex.org/W2101182707","https://openalex.org/W2113465510","https://openalex.org/W2122460814","https://openalex.org/W2124767974","https://openalex.org/W2134672568","https://openalex.org/W2139582206","https://openalex.org/W2147231162","https://openalex.org/W2151831732","https://openalex.org/W2152770371","https://openalex.org/W2154139219","https://openalex.org/W2159675211","https://openalex.org/W2161746138","https://openalex.org/W2163493106","https://openalex.org/W4238052567","https://openalex.org/W4246995357"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W1971568933","https://openalex.org/W2117258802"],"abstract_inverted_index":{"The":[0,33],"Proteolysis":[1],"MAP":[2],"(PMAP,":[3],"http://www.proteolysis.org)":[4],"is":[5,23,76,128],"a":[6,112],"user-friendly":[7],"website":[8],"intended":[9],"to":[10,78,149,159],"aid":[11],"the":[12,81,88,123,132,142],"scientific":[13],"community":[14,59],"in":[15,30,52,111],"reasoning":[16],"about":[17,161],"proteolytic":[18,72,153],"networks":[19],"and":[20,37,74,115,136,155],"pathways.":[21],"PMAP":[22,55,145],"comprised":[24,101],"of":[25,80,85,102,122,134,144,152],"five":[26],"databases,":[27,35],"linked":[28],"together":[29],"one":[31],"environment.":[32],"foundation":[34],"ProteaseDB":[36],"SubstrateDB,":[38],"are":[39],"driven":[40],"by":[41,119],"an":[42],"automated":[43],"annotation":[44],"pipeline":[45],"that":[46],"generates":[47],"dynamic":[48],"'Molecule":[49],"Pages',":[50],"rich":[51],"molecular":[53],"information.":[54],"also":[56,129],"contains":[57],"two":[58],"annotated":[60],"databases":[61,93,143],"focused":[62],"on":[63,68],"function;":[64],"CutDB":[65],"has":[66],"information":[67,79],"more":[69],"than":[70],"5000":[71],"events,":[73],"ProfileDB":[75],"dedicated":[77],"substrate":[82],"recognition":[83],"specificity":[84],"proteases.":[86],"Together,":[87],"content":[89],"within":[90],"these":[91],"four":[92],"will":[94,99],"ultimately":[95],"feed":[96],"PathwayDB,":[97],"which":[98],"be":[100,108,147],"known":[103],"pathways":[104,117],"whose":[105],"function":[106],"can":[107,146],"dynamically":[109],"modeled":[110],"rule-based":[113],"manner,":[114],"hypothetical":[116],"suggested":[118],"semi-automated":[120],"culling":[121],"literature.":[124],"A":[125],"Protease":[126],"Toolkit":[127],"available":[130],"for":[131],"analysis":[133],"proteases":[135],"proteolysis.":[137,162],"Here,":[138],"we":[139],"describe":[140],"how":[141],"used":[148],"foster":[150],"understanding":[151],"pathways,":[154],"equally":[156],"as":[157],"significant,":[158],"reason":[160]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":12}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}