{"id":"https://openalex.org/W1980354067","doi":"https://doi.org/10.1093/nar/gkn613","title":"BodyParts3D: 3D structure database for anatomical concepts","display_name":"BodyParts3D: 3D structure database for anatomical concepts","publication_year":2008,"publication_date":"2008-10-04","ids":{"openalex":"https://openalex.org/W1980354067","doi":"https://doi.org/10.1093/nar/gkn613","mag":"1980354067","pmid":"https://pubmed.ncbi.nlm.nih.gov/18835852"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkn613","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn613","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gkn613","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022019571","display_name":"N Mitsuhashi","orcid":"https://orcid.org/0000-0003-3300-7308"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"N. Mitsuhashi","raw_affiliation_strings":["Database Center for Life Science, Research Organization of Information and Systems, Faculty of Engineering Bldg.12, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Database Center for Life Science, Research Organization of Information and Systems, Faculty of Engineering Bldg.12, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100836670","display_name":"Kenji Fujieda","orcid":null},"institutions":[{"id":"https://openalex.org/I113198587","display_name":"National Institute of Genetics","ror":"https://ror.org/02xg1m795","country_code":"JP","type":"facility","lineage":["https://openalex.org/I113198587","https://openalex.org/I1319490839","https://openalex.org/I4210158934"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"K. Fujieda","raw_affiliation_strings":["National Institute of Genetics, Mishima, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Genetics, Mishima, Japan","institution_ids":["https://openalex.org/I113198587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111968061","display_name":"Takuro Tamura","orcid":null},"institutions":[{"id":"https://openalex.org/I113198587","display_name":"National Institute of Genetics","ror":"https://ror.org/02xg1m795","country_code":"JP","type":"facility","lineage":["https://openalex.org/I113198587","https://openalex.org/I1319490839","https://openalex.org/I4210158934"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"T. Tamura","raw_affiliation_strings":["National Institute of Genetics, Mishima, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Genetics, Mishima, Japan","institution_ids":["https://openalex.org/I113198587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036861980","display_name":"Shoko Kawamoto","orcid":"https://orcid.org/0000-0002-6404-3443"},"institutions":[{"id":"https://openalex.org/I113198587","display_name":"National Institute of Genetics","ror":"https://ror.org/02xg1m795","country_code":"JP","type":"facility","lineage":["https://openalex.org/I113198587","https://openalex.org/I1319490839","https://openalex.org/I4210158934"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"S. Kawamoto","raw_affiliation_strings":["National Institute of Genetics, Mishima, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Genetics, Mishima, Japan","institution_ids":["https://openalex.org/I113198587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027081795","display_name":"Toshiyuki Takagi","orcid":"https://orcid.org/0000-0003-1283-4320"},"institutions":[{"id":"https://openalex.org/I113198587","display_name":"National Institute of Genetics","ror":"https://ror.org/02xg1m795","country_code":"JP","type":"facility","lineage":["https://openalex.org/I113198587","https://openalex.org/I1319490839","https://openalex.org/I4210158934"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"T. Takagi","raw_affiliation_strings":["National Institute of Genetics, Mishima, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Genetics, Mishima, Japan","institution_ids":["https://openalex.org/I113198587"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020740858","display_name":"Kousaku Okubo","orcid":null},"institutions":[{"id":"https://openalex.org/I113198587","display_name":"National Institute of Genetics","ror":"https://ror.org/02xg1m795","country_code":"JP","type":"facility","lineage":["https://openalex.org/I113198587","https://openalex.org/I1319490839","https://openalex.org/I4210158934"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"K. Okubo","raw_affiliation_strings":["National Institute of Genetics, Mishima, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Genetics, Mishima, Japan","institution_ids":["https://openalex.org/I113198587"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5022019571"],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.699,"has_fulltext":false,"cited_by_count":239,"citation_normalized_percentile":{"value":0.69027543,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"37","issue":"Database","first_page":"D782","last_page":"D785"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12417","display_name":"Morphological variations and asymmetry","score":0.9455000162124634,"subfield":{"id":"https://openalex.org/subfields/2608","display_name":"Geometry and Topology"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9372000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6523091197013855},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.6078639030456543},{"id":"https://openalex.org/keywords/human-anatomy","display_name":"Human anatomy","score":0.4990203380584717},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.4908786416053772},{"id":"https://openalex.org/keywords/human-body","display_name":"Human body","score":0.4815507233142853},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.42039602994918823},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3334020972251892},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32267940044403076}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6523091197013855},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.6078639030456543},{"id":"https://openalex.org/C2985650651","wikidata":"https://www.wikidata.org/wiki/Q23852","display_name":"Human anatomy","level":2,"score":0.4990203380584717},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.4908786416053772},{"id":"https://openalex.org/C193293595","wikidata":"https://www.wikidata.org/wiki/Q23852","display_name":"Human body","level":2,"score":0.4815507233142853},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.42039602994918823},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3334020972251892},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32267940044403076},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D004014","descriptor_name":"Dictionaries as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004014","descriptor_name":"Dictionaries as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004014","descriptor_name":"Dictionaries as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008953","descriptor_name":"Models, Anatomic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008953","descriptor_name":"Models, Anatomic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008953","descriptor_name":"Models, Anatomic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkn613","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn613","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:18835852","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18835852","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.791.4622","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.791.4622","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/9a/05/gkn613.PMC2686534.pdf","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:2686534","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2686534","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkn613","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn613","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Responsible consumption and production","score":0.5199999809265137,"id":"https://metadata.un.org/sdg/12"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320909","display_name":"Keio University","ror":"https://ror.org/02kn6nx58"},{"id":"https://openalex.org/F4320320912","display_name":"Ministry of Education, Culture, Sports, Science and Technology","ror":"https://ror.org/048rj2z13"},{"id":"https://openalex.org/F4320324670","display_name":"Kitasato University","ror":"https://ror.org/00f2txz25"},{"id":"https://openalex.org/F4320324891","display_name":"Iran Telecommunication Research Center","ror":"https://ror.org/01a3g2z22"},{"id":"https://openalex.org/F4320335839","display_name":"National Institute of Information and Communications Technology","ror":"https://ror.org/016bgq349"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W1991861546","https://openalex.org/W2006268511","https://openalex.org/W2020936206","https://openalex.org/W2068909183","https://openalex.org/W2095617559","https://openalex.org/W2163670493","https://openalex.org/W2789353489","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2889545530","https://openalex.org/W2081600661","https://openalex.org/W2329748360","https://openalex.org/W2777307546","https://openalex.org/W3200296584","https://openalex.org/W2369670902","https://openalex.org/W4234389937","https://openalex.org/W4233845962","https://openalex.org/W4386988938","https://openalex.org/W2373425158"],"abstract_inverted_index":{"BodyParts3D":[0,44,117],"is":[1,118],"a":[2,22,46],"dictionary-type":[3],"database":[4],"for":[5,26,74,111],"anatomy":[6,38],"in":[7,37,50,61,77,101],"which":[8,53],"anatomical":[9,71],"concepts":[10],"are":[11,115],"represented":[12],"by":[13,89],"3D":[14,23],"structure":[15],"data":[16,60],"that":[17],"specify":[18],"corresponding":[19],"segments":[20,92],"of":[21,57,68,86],"whole-body":[24,97],"model":[25,98],"an":[27],"adult":[28],"human":[29,51],"male.":[30],"It":[31],"encompasses":[32],"morphological":[33],"and":[34,39,59,64,93,109],"geometrical":[35],"knowledge":[36],"complements":[40],"ontological":[41],"representation.":[42],"Moreover,":[43],"introduces":[45],"universal":[47],"coordinate":[48],"system":[49],"anatomy,":[52],"may":[54],"facilitate":[55],"management":[56],"samples":[58],"biomedical":[62],"research":[63],"clinical":[65,104,113],"practice.":[66],"As":[67],"today,":[69],"382":[70],"concepts,":[72],"sufficient":[73,107],"mapping":[75],"materials":[76],"most":[78,112],"molecular":[79],"medicine":[80],"experiments,":[81],"have":[82],"been":[83],"specified.":[84],"Expansion":[85],"the":[87,96],"dictionary":[88],"adding":[90],"further":[91],"details":[94],"to":[95],"will":[99],"continue":[100],"collaboration":[102],"with":[103],"researchers":[105],"until":[106],"resolution":[108],"accuracy":[110],"application":[114],"achieved.":[116],"accessible":[119],"at:":[120],"http://lifesciencedb.jp/ag/bp3d/.":[121]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":27},{"year":2024,"cited_by_count":33},{"year":2023,"cited_by_count":28},{"year":2022,"cited_by_count":18},{"year":2021,"cited_by_count":22},{"year":2020,"cited_by_count":20},{"year":2019,"cited_by_count":19},{"year":2018,"cited_by_count":10},{"year":2017,"cited_by_count":16},{"year":2016,"cited_by_count":15},{"year":2015,"cited_by_count":13},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-05-05T08:41:31.759640","created_date":"2025-10-10T00:00:00"}
