{"id":"https://openalex.org/W2098359740","doi":"https://doi.org/10.1093/nar/gkn324","title":"E1DS: catalytic site prediction based on 1D signatures of concurrent conservation","display_name":"E1DS: catalytic site prediction based on 1D signatures of concurrent conservation","publication_year":2008,"publication_date":"2008-05-19","ids":{"openalex":"https://openalex.org/W2098359740","doi":"https://doi.org/10.1093/nar/gkn324","mag":"2098359740","pmid":"https://pubmed.ncbi.nlm.nih.gov/18524800"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkn324","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn324","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_2/W291/7630647/gkn324.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/36/suppl_2/W291/7630647/gkn324.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5113915037","display_name":"T.-Y. Chien","orcid":null},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"T.-Y. Chien","raw_affiliation_strings":["Department of Computer Science and Information Engineering, National Taiwan University, Taipei, Taiwan, ROC","Department of Computer Science and Information Engineering, National Taiwan University, Taipei, Taiwan,ROC"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Engineering, National Taiwan University, Taipei, Taiwan, ROC","institution_ids":["https://openalex.org/I16733864"]},{"raw_affiliation_string":"Department of Computer Science and Information Engineering, National Taiwan University, Taipei, Taiwan,ROC","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030417045","display_name":"Darby Tien-Hao Chang","orcid":"https://orcid.org/0000-0002-5056-8679"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]},{"id":"https://openalex.org/I91807558","display_name":"National Cheng Kung University","ror":"https://ror.org/01b8kcc49","country_code":"TW","type":"education","lineage":["https://openalex.org/I91807558"]},{"id":"https://openalex.org/I99908691","display_name":"Yuan Ze University","ror":"https://ror.org/01fv1ds98","country_code":"TW","type":"education","lineage":["https://openalex.org/I99908691"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"D. T.-H. Chang","raw_affiliation_strings":["Department of Computer Science and Information Engineering, National Taiwan University, Taipei 106, 2 Department of Electrical Engineering, National Cheng Kung University, Tainan 701, 3 Department of Bio-Industrial Mechatronics Engineering, National Taiwan University, Taipei 106 and 4 Department of Computer Science and Engineering, Yuan Ze University, Chung-Li 320, Taiwan, ROC","National Cheng Kung University, Tainan City, Taiwan"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Engineering, National Taiwan University, Taipei 106, 2 Department of Electrical Engineering, National Cheng Kung University, Tainan 701, 3 Department of Bio-Industrial Mechatronics Engineering, National Taiwan University, Taipei 106 and 4 Department of Computer Science and Engineering, Yuan Ze University, Chung-Li 320, Taiwan, ROC","institution_ids":["https://openalex.org/I99908691","https://openalex.org/I16733864","https://openalex.org/I91807558"]},{"raw_affiliation_string":"National Cheng Kung University, Tainan City, Taiwan","institution_ids":["https://openalex.org/I91807558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100710720","display_name":"Chien\u2010Yu Chen","orcid":"https://orcid.org/0000-0002-6940-6389"},"institutions":[{"id":"https://openalex.org/I99908691","display_name":"Yuan Ze University","ror":"https://ror.org/01fv1ds98","country_code":"TW","type":"education","lineage":["https://openalex.org/I99908691"]},{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]},{"id":"https://openalex.org/I91807558","display_name":"National Cheng Kung University","ror":"https://ror.org/01b8kcc49","country_code":"TW","type":"education","lineage":["https://openalex.org/I91807558"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"C.-Y. Chen","raw_affiliation_strings":["Department of Computer Science and Information Engineering, National Taiwan University, Taipei 106, 2 Department of Electrical Engineering, National Cheng Kung University, Tainan 701, 3 Department of Bio-Industrial Mechatronics Engineering, National Taiwan University, Taipei 106 and 4 Department of Computer Science and Engineering, Yuan Ze University, Chung-Li 320, Taiwan, ROC","National Cheng Kung University, Tainan City, Taiwan"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Engineering, National Taiwan University, Taipei 106, 2 Department of Electrical Engineering, National Cheng Kung University, Tainan 701, 3 Department of Bio-Industrial Mechatronics Engineering, National Taiwan University, Taipei 106 and 4 Department of Computer Science and Engineering, Yuan Ze University, Chung-Li 320, Taiwan, ROC","institution_ids":["https://openalex.org/I99908691","https://openalex.org/I16733864","https://openalex.org/I91807558"]},{"raw_affiliation_string":"National Cheng Kung University, Tainan City, Taiwan","institution_ids":["https://openalex.org/I91807558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052659224","display_name":"Yi-Zhong Weng","orcid":null},"institutions":[{"id":"https://openalex.org/I99908691","display_name":"Yuan Ze University","ror":"https://ror.org/01fv1ds98","country_code":"TW","type":"education","lineage":["https://openalex.org/I99908691"]},{"id":"https://openalex.org/I91807558","display_name":"National Cheng Kung University","ror":"https://ror.org/01b8kcc49","country_code":"TW","type":"education","lineage":["https://openalex.org/I91807558"]},{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Y.-Z. Weng","raw_affiliation_strings":["Department of Computer Science and Information Engineering, National Taiwan University, Taipei 106, 2 Department of Electrical Engineering, National Cheng Kung University, Tainan 701, 3 Department of Bio-Industrial Mechatronics Engineering, National Taiwan University, Taipei 106 and 4 Department of Computer Science and Engineering, Yuan Ze University, Chung-Li 320, Taiwan, ROC","National Cheng Kung University, Tainan City, Taiwan"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Engineering, National Taiwan University, Taipei 106, 2 Department of Electrical Engineering, National Cheng Kung University, Tainan 701, 3 Department of Bio-Industrial Mechatronics Engineering, National Taiwan University, Taipei 106 and 4 Department of Computer Science and Engineering, Yuan Ze University, Chung-Li 320, Taiwan, ROC","institution_ids":["https://openalex.org/I99908691","https://openalex.org/I16733864","https://openalex.org/I91807558"]},{"raw_affiliation_string":"National Cheng Kung University, Tainan City, Taiwan","institution_ids":["https://openalex.org/I91807558"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025757592","display_name":"Chen\u2010Ming Hsu","orcid":"https://orcid.org/0000-0001-5838-8886"},"institutions":[{"id":"https://openalex.org/I91807558","display_name":"National Cheng Kung University","ror":"https://ror.org/01b8kcc49","country_code":"TW","type":"education","lineage":["https://openalex.org/I91807558"]},{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]},{"id":"https://openalex.org/I99908691","display_name":"Yuan Ze University","ror":"https://ror.org/01fv1ds98","country_code":"TW","type":"education","lineage":["https://openalex.org/I99908691"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"C.-M. Hsu","raw_affiliation_strings":["Department of Computer Science and Information Engineering, National Taiwan University, Taipei 106, 2 Department of Electrical Engineering, National Cheng Kung University, Tainan 701, 3 Department of Bio-Industrial Mechatronics Engineering, National Taiwan University, Taipei 106 and 4 Department of Computer Science and Engineering, Yuan Ze University, Chung-Li 320, Taiwan, ROC","National Cheng Kung University, Tainan City, Taiwan"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Engineering, National Taiwan University, Taipei 106, 2 Department of Electrical Engineering, National Cheng Kung University, Tainan 701, 3 Department of Bio-Industrial Mechatronics Engineering, National Taiwan University, Taipei 106 and 4 Department of Computer Science and Engineering, Yuan Ze University, Chung-Li 320, Taiwan, ROC","institution_ids":["https://openalex.org/I99908691","https://openalex.org/I16733864","https://openalex.org/I91807558"]},{"raw_affiliation_string":"National Cheng Kung University, Tainan City, Taiwan","institution_ids":["https://openalex.org/I91807558"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5113915037"],"corresponding_institution_ids":["https://openalex.org/I16733864"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.8271,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.72599625,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"36","issue":"Web Server","first_page":"W291","last_page":"W296"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7559407949447632},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.6005498766899109},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5905176997184753},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5636181831359863},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5470768213272095},{"id":"https://openalex.org/keywords/conserved-sequence","display_name":"Conserved sequence","score":0.5405799746513367},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.48960334062576294},{"id":"https://openalex.org/keywords/sequence-motif","display_name":"Sequence motif","score":0.46301883459091187},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.4513095021247864},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.44030874967575073},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.43588557839393616},{"id":"https://openalex.org/keywords/signature","display_name":"Signature (topology)","score":0.43209052085876465},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.3962045907974243},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.36160844564437866},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.20854875445365906},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.1519547700881958},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10561257600784302}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7559407949447632},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.6005498766899109},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5905176997184753},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5636181831359863},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5470768213272095},{"id":"https://openalex.org/C199216141","wikidata":"https://www.wikidata.org/wiki/Q4995178","display_name":"Conserved sequence","level":4,"score":0.5405799746513367},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.48960334062576294},{"id":"https://openalex.org/C117745874","wikidata":"https://www.wikidata.org/wiki/Q901612","display_name":"Sequence motif","level":3,"score":0.46301883459091187},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.4513095021247864},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.44030874967575073},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.43588557839393616},{"id":"https://openalex.org/C2779696439","wikidata":"https://www.wikidata.org/wiki/Q7512811","display_name":"Signature (topology)","level":2,"score":0.43209052085876465},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.3962045907974243},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.36160844564437866},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.20854875445365906},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.1519547700881958},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10561257600784302},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020134","descriptor_name":"Catalytic Domain","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020134","descriptor_name":"Catalytic Domain","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020134","descriptor_name":"Catalytic Domain","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkn324","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn324","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_2/W291/7630647/gkn324.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:18524800","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18524800","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2447799","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2447799","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkn324","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn324","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_2/W291/7630647/gkn324.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7200000286102295,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321040","display_name":"National Science Council","ror":"https://ror.org/02kv4zf79"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2098359740.pdf","grobid_xml":"https://content.openalex.org/works/W2098359740.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W1561011671","https://openalex.org/W1964640688","https://openalex.org/W1965582988","https://openalex.org/W1967293793","https://openalex.org/W1971099088","https://openalex.org/W1971449260","https://openalex.org/W1982481323","https://openalex.org/W2014474863","https://openalex.org/W2028903194","https://openalex.org/W2043199972","https://openalex.org/W2043886357","https://openalex.org/W2047630272","https://openalex.org/W2067860373","https://openalex.org/W2077776336","https://openalex.org/W2078866107","https://openalex.org/W2103818457","https://openalex.org/W2106882534","https://openalex.org/W2116435022","https://openalex.org/W2116900051","https://openalex.org/W2119027485","https://openalex.org/W2125546020","https://openalex.org/W2128037544","https://openalex.org/W2132094529","https://openalex.org/W2137991504","https://openalex.org/W2155500679","https://openalex.org/W2158714788","https://openalex.org/W2160297538","https://openalex.org/W2160769697","https://openalex.org/W2161062388","https://openalex.org/W2164176644","https://openalex.org/W2168514491","https://openalex.org/W3145366215","https://openalex.org/W4211054902","https://openalex.org/W4211083314","https://openalex.org/W4317639370"],"related_works":["https://openalex.org/W2036521446","https://openalex.org/W2899474303","https://openalex.org/W2105364679","https://openalex.org/W2149758239","https://openalex.org/W408054492","https://openalex.org/W2804480386","https://openalex.org/W3186624150","https://openalex.org/W2121914783","https://openalex.org/W2014681911","https://openalex.org/W65850283"],"abstract_inverted_index":{"Large-scale":[0],"automatic":[1],"annotation":[2],"of":[3,22,42,49,60,91,96,112,142],"protein":[4,58,98],"sequences":[5,17],"remains":[6],"challenging":[7],"in":[8,81,118,128,148,169],"postgenomics":[9],"era.":[10],"E1DS":[11,121,135,163,177],"is":[12,53,89,109,136,178],"designed":[13],"for":[14],"annotating":[15],"enzyme":[16,106],"based":[18,138,161],"on":[19,139,162],"a":[20,32,65,86,140,183],"repository":[21],"1D":[23],"signatures.":[24],"The":[25],"employed":[26],"sequence":[27,87,125],"signatures":[28,126,164],"are":[29,74,115,165],"derived":[30],"using":[31],"novel":[33],"pattern":[34,157],"mining":[35],"approach":[36],"that":[37,73,104,114,127],"discovers":[38],"long":[39],"motifs":[40],"consisted":[41,90],"several":[43],"sequential":[44,51,71],"blocks":[45,52,72],"(conserved":[46],"segments).":[47],"Each":[48],"the":[50,57,97,102,119,155,174],"considerably":[54],"conserved":[55],"among":[56],"members":[59],"an":[61,105],"EC":[62,133],"group.":[63],"Moreover,":[64],"signature":[66,88],"includes":[67],"at":[68,180,189],"least":[69],"three":[70],"concurrently":[75],"conserved,":[76],"i.e.":[77],"frequently":[78],"observed":[79],"together":[80],"sequences.":[82],"In":[83],"other":[84],"words,":[85],"residues":[92,113],"from":[93],"multiple":[94],"regions":[95],"sequence,":[99],"which":[100],"echoes":[101],"observation":[103],"catalytic":[107,145,171],"site":[108,185],"usually":[110],"constituted":[111],"largely":[116],"separated":[117],"sequence.":[120],"currently":[122],"contains":[123],"5421":[124],"total":[129],"cover":[130],"932":[131],"4-digital":[132],"numbers.":[134],"evaluated":[137],"collection":[141],"enzymes":[143],"with":[144],"sites":[146,172],"annotated":[147],"Catalytic":[149],"Site":[150],"Atlas.":[151],"When":[152],"compared":[153],"to":[154],"famous":[156],"database":[158],"PROSITE,":[159],"predictions":[160],"considered":[166],"more":[167],"sensitive":[168],"identifying":[170],"and":[173,182],"involved":[175],"residues.":[176],"available":[179],"http://e1ds.ee.ncku.edu.tw/":[181],"mirror":[184],"can":[186],"be":[187],"found":[188],"http://e1ds.csbb.ntu.edu.tw/.":[190]},"counts_by_year":[{"year":2017,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
