{"id":"https://openalex.org/W2168939909","doi":"https://doi.org/10.1093/nar/gkn323","title":"Onto-CC: a web server for identifying Gene Ontology conceptual clusters","display_name":"Onto-CC: a web server for identifying Gene Ontology conceptual clusters","publication_year":2008,"publication_date":"2008-05-19","ids":{"openalex":"https://openalex.org/W2168939909","doi":"https://doi.org/10.1093/nar/gkn323","mag":"2168939909","pmid":"https://pubmed.ncbi.nlm.nih.gov/18544607"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkn323","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn323","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_2/W352/18782052/gkn323.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/36/suppl_2/W352/18782052/gkn323.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017737281","display_name":"Roc\u00edo Romero\u2010Zaliz","orcid":"https://orcid.org/0000-0003-4500-9781"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"R. Romero-Zaliz","raw_affiliation_strings":["Departamento de Ciencias de la Computaci\u00f3n e Inteligencia Artificial, Escuela T\u00e9cnica Superior de Ingenier\u00edas Inform\u00e1tica y de Telecomunicaci\u00f3n, c/. Daniel Saucedo Aranda, s/n 18071 Granada, Spain","Departamento de Ciencias de la Computacio \u00b4n e Inteligencia Artificial, Escuela Te \u00b4cnica Superior de Ingenier\u0131 \u00b4as Informa \u00b4tica y de Telecomunicacio \u00b4n, c/. Daniel Saucedo Aranda, s/n 18071 Granada, Spain,"],"affiliations":[{"raw_affiliation_string":"Departamento de Ciencias de la Computaci\u00f3n e Inteligencia Artificial, Escuela T\u00e9cnica Superior de Ingenier\u00edas Inform\u00e1tica y de Telecomunicaci\u00f3n, c/. Daniel Saucedo Aranda, s/n 18071 Granada, Spain","institution_ids":[]},{"raw_affiliation_string":"Departamento de Ciencias de la Computacio \u00b4n e Inteligencia Artificial, Escuela Te \u00b4cnica Superior de Ingenier\u0131 \u00b4as Informa \u00b4tica y de Telecomunicacio \u00b4n, c/. Daniel Saucedo Aranda, s/n 18071 Granada, Spain,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037940023","display_name":"Coral del Val","orcid":"https://orcid.org/0000-0002-2212-2039"},"institutions":[{"id":"https://openalex.org/I6585545","display_name":"European Telecommunications Standards Institute","ror":"https://ror.org/00pwny267","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I6585545"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"C. del Val","raw_affiliation_strings":["Departamento de Ciencias de la Computacio n e Inteligencia Artificial, Escuela Te cnica Superior de Ingenier as Informa tica y de Telecomunicacio n, c/. Daniel Saucedo Aranda, s/n 18071 Granada, Spain,","Departamento de Ciencias de la Computacio \u00b4n e Inteligencia Artificial, Escuela Te \u00b4cnica Superior de Ingenier\u0131 \u00b4as Informa \u00b4tica y de Telecomunicacio \u00b4n, c/. Daniel Saucedo Aranda, s/n 18071 Granada, Spain,"],"affiliations":[{"raw_affiliation_string":"Departamento de Ciencias de la Computacio n e Inteligencia Artificial, Escuela Te cnica Superior de Ingenier as Informa tica y de Telecomunicacio n, c/. Daniel Saucedo Aranda, s/n 18071 Granada, Spain,","institution_ids":["https://openalex.org/I6585545"]},{"raw_affiliation_string":"Departamento de Ciencias de la Computacio \u00b4n e Inteligencia Artificial, Escuela Te \u00b4cnica Superior de Ingenier\u0131 \u00b4as Informa \u00b4tica y de Telecomunicacio \u00b4n, c/. Daniel Saucedo Aranda, s/n 18071 Granada, Spain,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086997208","display_name":"Justin Cobb","orcid":"https://orcid.org/0000-0002-6095-8822"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. P. Cobb","raw_affiliation_strings":["Cellular Injury and Adaptation Laboratory, Washington University School of Medicine and"],"affiliations":[{"raw_affiliation_string":"Cellular Injury and Adaptation Laboratory, Washington University School of Medicine and","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009082904","display_name":"Igor Zwir","orcid":"https://orcid.org/0000-0002-1443-0234"},"institutions":[{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I6585545","display_name":"European Telecommunications Standards Institute","ror":"https://ror.org/00pwny267","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I6585545"]}],"countries":["FR","US"],"is_corresponding":false,"raw_author_name":"I. Zwir","raw_affiliation_strings":["Departamento de Ciencias de la Computacio n e Inteligencia Artificial, Escuela Te cnica Superior de Ingenier as Informa tica y de Telecomunicacio n, c/. Daniel Saucedo Aranda, s/n 18071 Granada, Spain,","Department of Molecular Microbiology, Howard Hughes Medical Institute, Washington University School of Medicine, St. Louis, Missouri, USA","Departamento de Ciencias de la Computacio \u00b4n e Inteligencia Artificial, Escuela Te \u00b4cnica Superior de Ingenier\u0131 \u00b4as Informa \u00b4tica y de Telecomunicacio \u00b4n, c/. Daniel Saucedo Aranda, s/n 18071 Granada, Spain,"],"affiliations":[{"raw_affiliation_string":"Departamento de Ciencias de la Computacio n e Inteligencia Artificial, Escuela Te cnica Superior de Ingenier as Informa tica y de Telecomunicacio n, c/. Daniel Saucedo Aranda, s/n 18071 Granada, Spain,","institution_ids":["https://openalex.org/I6585545"]},{"raw_affiliation_string":"Department of Molecular Microbiology, Howard Hughes Medical Institute, Washington University School of Medicine, St. Louis, Missouri, USA","institution_ids":["https://openalex.org/I1344073410"]},{"raw_affiliation_string":"Departamento de Ciencias de la Computacio \u00b4n e Inteligencia Artificial, Escuela Te \u00b4cnica Superior de Ingenier\u0131 \u00b4as Informa \u00b4tica y de Telecomunicacio \u00b4n, c/. Daniel Saucedo Aranda, s/n 18071 Granada, Spain,","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5017737281"],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.4149,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.65110104,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"36","issue":"Web Server","first_page":"W352","last_page":"W357"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9900000095367432,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9367662668228149},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.609040379524231},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4761395752429962},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4689618647098541},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.4630449414253235},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.4473414719104767},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3509597182273865},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.3283272981643677},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.28528153896331787},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.1452798843383789},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.12902012467384338}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9367662668228149},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.609040379524231},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4761395752429962},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4689618647098541},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.4630449414253235},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.4473414719104767},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3509597182273865},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.3283272981643677},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.28528153896331787},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.1452798843383789},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.12902012467384338},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkn323","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn323","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_2/W352/18782052/gkn323.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:18544607","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18544607","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.810.5807","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.810.5807","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/cf/51/gkn323.PMC2447763.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.961.3184","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.961.3184","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/36/suppl_2/W352.full.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.982.8602","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.982.8602","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2008/06/10/nar.gkn323.full.pdf","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:2447763","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2447763","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkn323","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn323","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_2/W352/18782052/gkn323.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6000000238418579,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320323737","display_name":"Ministerio de Ciencia y Tecnolog\u00eda","ror":"https://ror.org/034900433"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2168939909.pdf","grobid_xml":"https://content.openalex.org/works/W2168939909.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W576104647","https://openalex.org/W1481210918","https://openalex.org/W1529046154","https://openalex.org/W1971185254","https://openalex.org/W1984345785","https://openalex.org/W1985738984","https://openalex.org/W1997295508","https://openalex.org/W2016314379","https://openalex.org/W2017337590","https://openalex.org/W2039751039","https://openalex.org/W2081724586","https://openalex.org/W2089988218","https://openalex.org/W2103017472","https://openalex.org/W2104878392","https://openalex.org/W2107903949","https://openalex.org/W2109619915","https://openalex.org/W2116027790","https://openalex.org/W2121795229","https://openalex.org/W2122261141","https://openalex.org/W2130479394","https://openalex.org/W2133045719","https://openalex.org/W2134485438","https://openalex.org/W2135000328","https://openalex.org/W2135230352","https://openalex.org/W2137082708","https://openalex.org/W2139084975","https://openalex.org/W2140060291","https://openalex.org/W2140498399","https://openalex.org/W2140628921","https://openalex.org/W2148511931","https://openalex.org/W2154847103","https://openalex.org/W2161062388","https://openalex.org/W2168786813","https://openalex.org/W2170401183","https://openalex.org/W2753765968","https://openalex.org/W2964646613","https://openalex.org/W4210241463","https://openalex.org/W4211083314","https://openalex.org/W4233912639","https://openalex.org/W4236241609","https://openalex.org/W4245145908","https://openalex.org/W4248664566","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2003333417","https://openalex.org/W2378862226","https://openalex.org/W2065457896","https://openalex.org/W118236634","https://openalex.org/W3173234801","https://openalex.org/W2355326633","https://openalex.org/W2804669904","https://openalex.org/W2167984027","https://openalex.org/W2149777447","https://openalex.org/W2003076580"],"abstract_inverted_index":{"The":[0],"Gene":[1],"Ontology":[2],"(GO)":[3],"vocabulary":[4],"has":[5,269],"been":[6,270],"extensively":[7],"explored":[8],"to":[9,88,97,213,273,294],"analyze":[10],"the":[11,54,69,129,136,174,177,202,210,233,281,291,297],"functions":[12],"of":[13,31,51,81,100,109,121,135,156,176,199,235,257,285],"coexpressed":[14,161],"genes.":[15],"However,":[16],"despite":[17],"its":[18],"extended":[19],"use":[20,94],"in":[21,76,201,216,296],"Biology":[22],"and":[23,47,92,131,277,283,311],"Medical":[24],"Sciences,":[25],"there":[26,84],"are":[27],"still":[28],"high":[29],"levels":[30,198],"uncertainty":[32,130,175],"about":[33,72],"which":[34,49],"ontology":[35],"(i.e.":[36,104,123,167],"Molecular":[37,42],"Process,":[38],"Cellular":[39],"Component":[40],"or":[41,65],"Function)":[43],"should":[44],"be":[45],"used,":[46],"at":[48,196],"level":[50],"specificity.":[52],"Moreover,":[53],"GO":[55,95,165,203],"database":[56],"can":[57,250,260],"contain":[58],"incomplete":[59],"information":[60],"resulting":[61,289],"from":[62,187,290],"human":[63],"annotations,":[64],"highly":[66],"influenced":[67],"by":[68,179,244],"available":[70],"knowledge":[71],"a":[73,86,143,265,305],"specific":[74],"branch":[75],"an":[77,118,148,312],"ontology.":[78],"In":[79],"spite":[80],"these":[82,90],"drawbacks,":[83],"is":[85],"trend":[87],"ignore":[89],"problems":[91],"even":[93],"terms":[96,186,194],"conduct":[98],"searches":[99],"gene":[101,138,157,286],"expression":[102,105,124,168,287],"profiles":[103,288],"+":[106],"GO)":[107],"instead":[108],"more":[110],"cautious":[111],"approaches":[112],"that":[113,184,259],"just":[114],"consider":[115],"them":[116],"as":[117,147,191,193,239],"independent":[119,154],"source":[120],"validation":[122],"versus":[125,169],"GO).":[126,170],"Consequently,":[127],"propagating":[128],"producing":[132],"biased":[133],"analysis":[134],"required":[137],"grouping":[139,158],"hypotheses.":[140],"We":[141],"proposed":[142],"web":[144],"tool,":[145],"Onto-CC,":[146],"automatic":[149],"method":[150],"specially":[151],"suited":[152],"for":[153,264,308,315],"explanation/validation":[155],"hypotheses":[159,279],"(e.g.":[160],"genes)":[162],"based":[163],"on":[164,226],"clusters":[166,183,215],"Onto-CC":[171,268,300,314],"approach":[172,231],"reduces":[173],"queries":[178,258],"identifying":[180],"optimal":[181,236,255],"conceptual":[182],"combine":[185],"different":[188,197,275],"ontologies":[189],"simultaneously,":[190],"well":[192],"defined":[195],"specificity":[200],"hierarchy.":[204],"To":[205],"do":[206],"so,":[207],"we":[208,249],"implemented":[209],"EMO-CC":[211,307],"methodology":[212],"find":[214],"structural":[217],"databases":[218],"[GO":[219],"Directed":[220],"acyclic":[221],"Graph":[222],"(DAG)":[223],"tree],":[224],"inspired":[225],"Conceptual":[227],"Clustering":[228],"algorithms.":[229],"This":[230],"allows":[232],"management":[234],"cluster":[237],"sets":[238],"potential":[240],"parallel":[241],"hypotheses,":[242],"guided":[243],"multiobjective/multimodal":[245],"optimization":[246],"techniques.":[247],"Therefore,":[248],"generate":[251],"alternative":[252],"and,":[253],"still,":[254],"explanations":[256],"provide":[261],"new":[262],"insights":[263],"given":[266],"problem.":[267,299],"successfully":[271],"used":[272],"test":[274],"medical":[276],"biological":[278],"including":[280],"explanation":[282],"prediction":[284],"host":[292],"response":[293],"injuries":[295],"inflammatory":[298],"provides":[301],"two":[302],"versions:":[303],"Ready2GO,":[304],"precalculated":[306],"several":[309],"genomes":[310],"Advanced":[313],"custom":[316],"annotation":[317],"files":[318],"(http://gps-tools2.wustl.edu/onto-cc/index.html).":[319]},"counts_by_year":[{"year":2018,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
