{"id":"https://openalex.org/W2169250301","doi":"https://doi.org/10.1093/nar/gkn281","title":"PIE: an online prediction system for protein-protein interactions from text","display_name":"PIE: an online prediction system for protein-protein interactions from text","publication_year":2008,"publication_date":"2008-05-19","ids":{"openalex":"https://openalex.org/W2169250301","doi":"https://doi.org/10.1093/nar/gkn281","mag":"2169250301","pmid":"https://pubmed.ncbi.nlm.nih.gov/18508809"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkn281","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn281","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_2/W411/7627747/gkn281.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/36/suppl_2/W411/7627747/gkn281.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100327302","display_name":"Soo\u2010Jin Kim","orcid":"https://orcid.org/0000-0002-3803-9096"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]},{"id":"https://openalex.org/I1321296531","display_name":"National Institute of Standards and Technology","ror":"https://ror.org/05xpvk416","country_code":"US","type":"funder","lineage":["https://openalex.org/I1321296531","https://openalex.org/I1343035065"]}],"countries":["KR","US"],"is_corresponding":false,"raw_author_name":"S. Kim","raw_affiliation_strings":["Biointelligence Laboratory, School of Computer Science and Engineering, Seoul National University, Seoul 151-744, Korea","Biointelligence Laboratory, School of Computer Science and Engineering, Seoul National University, Seoul 151-744, Korea, 2 Manufacturing Systems Integration Division, National Institute of Standards and Technology, Gaithersburg, MD 20899, USA and 3 Center for Bioinformation Technology, Graduate Program in Bioinformatics, Seoul National University, Seoul 151-742, Korea"],"affiliations":[{"raw_affiliation_string":"Biointelligence Laboratory, School of Computer Science and Engineering, Seoul National University, Seoul 151-744, Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Biointelligence Laboratory, School of Computer Science and Engineering, Seoul National University, Seoul 151-744, Korea, 2 Manufacturing Systems Integration Division, National Institute of Standards and Technology, Gaithersburg, MD 20899, USA and 3 Center for Bioinformation Technology, Graduate Program in Bioinformatics, Seoul National University, Seoul 151-742, Korea","institution_ids":["https://openalex.org/I1321296531","https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079201651","display_name":"Sung\u2010Young Shin","orcid":"https://orcid.org/0000-0002-1447-9687"},"institutions":[{"id":"https://openalex.org/I1321296531","display_name":"National Institute of Standards and Technology","ror":"https://ror.org/05xpvk416","country_code":"US","type":"funder","lineage":["https://openalex.org/I1321296531","https://openalex.org/I1343035065"]},{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR","US"],"is_corresponding":false,"raw_author_name":"S.-Y. Shin","raw_affiliation_strings":["Biointelligence Laboratory, School of Computer Science and Engineering, Seoul National University, Seoul 151-744, Korea, 2 Manufacturing Systems Integration Division, National Institute of Standards and Technology, Gaithersburg, MD 20899, USA and 3 Center for Bioinformation Technology, Graduate Program in Bioinformatics, Seoul National University, Seoul 151-742, Korea"],"affiliations":[{"raw_affiliation_string":"Biointelligence Laboratory, School of Computer Science and Engineering, Seoul National University, Seoul 151-744, Korea, 2 Manufacturing Systems Integration Division, National Institute of Standards and Technology, Gaithersburg, MD 20899, USA and 3 Center for Bioinformation Technology, Graduate Program in Bioinformatics, Seoul National University, Seoul 151-742, Korea","institution_ids":["https://openalex.org/I1321296531","https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064912744","display_name":"In\u2010Hee Lee","orcid":"https://orcid.org/0000-0002-8857-1355"},"institutions":[{"id":"https://openalex.org/I1321296531","display_name":"National Institute of Standards and Technology","ror":"https://ror.org/05xpvk416","country_code":"US","type":"funder","lineage":["https://openalex.org/I1321296531","https://openalex.org/I1343035065"]},{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR","US"],"is_corresponding":false,"raw_author_name":"I.-H. Lee","raw_affiliation_strings":["Biointelligence Laboratory, School of Computer Science and Engineering, Seoul National University, Seoul 151-744, Korea, 2 Manufacturing Systems Integration Division, National Institute of Standards and Technology, Gaithersburg, MD 20899, USA and 3 Center for Bioinformation Technology, Graduate Program in Bioinformatics, Seoul National University, Seoul 151-742, Korea"],"affiliations":[{"raw_affiliation_string":"Biointelligence Laboratory, School of Computer Science and Engineering, Seoul National University, Seoul 151-744, Korea, 2 Manufacturing Systems Integration Division, National Institute of Standards and Technology, Gaithersburg, MD 20899, USA and 3 Center for Bioinformation Technology, Graduate Program in Bioinformatics, Seoul National University, Seoul 151-742, Korea","institution_ids":["https://openalex.org/I1321296531","https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100458117","display_name":"Sung Jin Kim","orcid":"https://orcid.org/0000-0002-5609-0485"},"institutions":[{"id":"https://openalex.org/I1321296531","display_name":"National Institute of Standards and Technology","ror":"https://ror.org/05xpvk416","country_code":"US","type":"funder","lineage":["https://openalex.org/I1321296531","https://openalex.org/I1343035065"]},{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR","US"],"is_corresponding":false,"raw_author_name":"S.-J. Kim","raw_affiliation_strings":["Biointelligence Laboratory, School of Computer Science and Engineering, Seoul National University, Seoul 151-744, Korea","Biointelligence Laboratory, School of Computer Science and Engineering, Seoul National University, Seoul 151-744, Korea, 2 Manufacturing Systems Integration Division, National Institute of Standards and Technology, Gaithersburg, MD 20899, USA and 3 Center for Bioinformation Technology, Graduate Program in Bioinformatics, Seoul National University, Seoul 151-742, Korea"],"affiliations":[{"raw_affiliation_string":"Biointelligence Laboratory, School of Computer Science and Engineering, Seoul National University, Seoul 151-744, Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Biointelligence Laboratory, School of Computer Science and Engineering, Seoul National University, Seoul 151-744, Korea, 2 Manufacturing Systems Integration Division, National Institute of Standards and Technology, Gaithersburg, MD 20899, USA and 3 Center for Bioinformation Technology, Graduate Program in Bioinformatics, Seoul National University, Seoul 151-742, Korea","institution_ids":["https://openalex.org/I1321296531","https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077880633","display_name":"Ram D. Sriram","orcid":"https://orcid.org/0000-0001-8602-4748"},"institutions":[{"id":"https://openalex.org/I1321296531","display_name":"National Institute of Standards and Technology","ror":"https://ror.org/05xpvk416","country_code":"US","type":"funder","lineage":["https://openalex.org/I1321296531","https://openalex.org/I1343035065"]},{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR","US"],"is_corresponding":false,"raw_author_name":"R. Sriram","raw_affiliation_strings":["Biointelligence Laboratory, School of Computer Science and Engineering, Seoul National University, Seoul 151-744, Korea, 2 Manufacturing Systems Integration Division, National Institute of Standards and Technology, Gaithersburg, MD 20899, USA and 3 Center for Bioinformation Technology, Graduate Program in Bioinformatics, Seoul National University, Seoul 151-742, Korea"],"affiliations":[{"raw_affiliation_string":"Biointelligence Laboratory, School of Computer Science and Engineering, Seoul National University, Seoul 151-744, Korea, 2 Manufacturing Systems Integration Division, National Institute of Standards and Technology, Gaithersburg, MD 20899, USA and 3 Center for Bioinformation Technology, Graduate Program in Bioinformatics, Seoul National University, Seoul 151-742, Korea","institution_ids":["https://openalex.org/I1321296531","https://openalex.org/I139264467"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5109907976","display_name":"Byoung-Tak Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I1321296531","display_name":"National Institute of Standards and Technology","ror":"https://ror.org/05xpvk416","country_code":"US","type":"funder","lineage":["https://openalex.org/I1321296531","https://openalex.org/I1343035065"]},{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR","US"],"is_corresponding":true,"raw_author_name":"B.-T. Zhang","raw_affiliation_strings":["Biointelligence Laboratory, School of Computer Science and Engineering, Seoul National University, Seoul 151-744, Korea, 2 Manufacturing Systems Integration Division, National Institute of Standards and Technology, Gaithersburg, MD 20899, USA and 3 Center for Bioinformation Technology, Graduate Program in Bioinformatics, Seoul National University, Seoul 151-742, Korea"],"affiliations":[{"raw_affiliation_string":"Biointelligence Laboratory, School of Computer Science and Engineering, Seoul National University, Seoul 151-744, Korea, 2 Manufacturing Systems Integration Division, National Institute of Standards and Technology, Gaithersburg, MD 20899, USA and 3 Center for Bioinformation Technology, Graduate Program in Bioinformatics, Seoul National University, Seoul 151-742, Korea","institution_ids":["https://openalex.org/I1321296531","https://openalex.org/I139264467"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5109907976"],"corresponding_institution_ids":["https://openalex.org/I1321296531","https://openalex.org/I139264467"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":4.011,"has_fulltext":false,"cited_by_count":60,"citation_normalized_percentile":{"value":0.94500569,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"36","issue":"Web Server","first_page":"W411","last_page":"W415"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9695000052452087,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9643999934196472,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.684342086315155},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.5341504812240601},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.5053158402442932},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4941120445728302},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.47669026255607605},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4467341899871826},{"id":"https://openalex.org/keywords/web-page","display_name":"Web page","score":0.4423454701900482},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.41431811451911926},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.41176488995552063},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3703250288963318},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.33028891682624817}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.684342086315155},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.5341504812240601},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.5053158402442932},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4941120445728302},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.47669026255607605},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4467341899871826},{"id":"https://openalex.org/C21959979","wikidata":"https://www.wikidata.org/wiki/Q36774","display_name":"Web page","level":2,"score":0.4423454701900482},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.41431811451911926},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.41176488995552063},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3703250288963318},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.33028891682624817},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C136264566","wikidata":"https://www.wikidata.org/wiki/Q159810","display_name":"Economy","level":1,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkn281","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn281","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_2/W411/7627747/gkn281.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:18508809","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18508809","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2447724","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2447724","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkn281","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn281","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_2/W411/7627747/gkn281.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.8399999737739563,"display_name":"Quality Education"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321292","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542"},{"id":"https://openalex.org/F4320322348","display_name":"Korea Science and Engineering Foundation","ror":"https://ror.org/013aysd81"},{"id":"https://openalex.org/F4320332178","display_name":"National Institute of Standards and Technology","ror":"https://ror.org/05xpvk416"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2169250301.pdf","grobid_xml":"https://content.openalex.org/works/W2169250301.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1558318887","https://openalex.org/W1580049798","https://openalex.org/W1623698862","https://openalex.org/W1993667925","https://openalex.org/W1994306321","https://openalex.org/W2002675557","https://openalex.org/W2044514479","https://openalex.org/W2078017455","https://openalex.org/W2081687495","https://openalex.org/W2085577304","https://openalex.org/W2092654472","https://openalex.org/W2124617249","https://openalex.org/W2127713198","https://openalex.org/W2128165179","https://openalex.org/W2163107094","https://openalex.org/W2168905447","https://openalex.org/W2759754398"],"related_works":["https://openalex.org/W2611741382","https://openalex.org/W3135843367","https://openalex.org/W2378005410","https://openalex.org/W2613685774","https://openalex.org/W3112355890","https://openalex.org/W2048876619","https://openalex.org/W36911888","https://openalex.org/W1649706580","https://openalex.org/W3195608031","https://openalex.org/W4385731361"],"abstract_inverted_index":{"Protein-protein":[0],"interaction":[1],"(PPI)":[2],"extraction":[3],"has":[4],"been":[5],"an":[6,83],"important":[7],"research":[8],"topic":[9],"in":[10,82,135],"bio-text":[11],"mining":[12],"area,":[13],"since":[14],"the":[15,33,38,77],"PPI":[16,131],"information":[17,51],"is":[18,54,143],"critical":[19],"for":[20,112,139],"understanding":[21],"biological":[22],"processes.":[23],"However,":[24],"there":[25],"are":[26,80,110],"very":[27],"few":[28],"open":[29],"systems":[30,39],"available":[31,145],"on":[32,41,45],"Web":[34,57,140],"and":[35,106,114,125],"most":[36],"of":[37],"focus":[40],"keyword":[42],"searching":[43],"based":[44],"predefined":[46],"PPIs.":[47],"PIE":[48,93,118,142],"(Protein":[49],"Interaction":[50],"Extraction":[52],"system)":[53],"a":[55],"configurable":[56],"service":[58],"to":[59,129],"extract":[60],"PPIs":[61],"from":[62],"literature,":[63],"including":[64],"user-provided":[65],"papers":[66],"as":[67,69,99],"well":[68],"PubMed":[70,103],"articles.":[71],"After":[72],"providing":[73],"abstracts":[74],"or":[75],"papers,":[76],"prediction":[78],"results":[79,134],"displayed":[81],"easily":[84],"readable":[85],"form":[86],"with":[87],"essential,":[88],"yet":[89],"compact":[90],"features.":[91],"The":[92,117],"interface":[94],"supports":[95],"more":[96],"features":[97],"such":[98],"PDF":[100],"file":[101],"extraction,":[102],"search":[104],"tool":[105],"network":[107],"communication,":[108],"which":[109,133],"useful":[111],"biologists":[113],"bio-system":[115],"developers.":[116],"system":[119],"utilizes":[120],"natural":[121],"language":[122],"processing":[123],"techniques":[124],"machine":[126],"learning":[127],"methodologies":[128],"predict":[130],"sentences,":[132],"high":[136],"precision":[137],"performance":[138],"users.":[141],"freely":[144],"at":[146],"http://bi.snu.ac.kr/pie/.":[147]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":10}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
