{"id":"https://openalex.org/W2134184781","doi":"https://doi.org/10.1093/nar/gkn256","title":"SerbGO: searching for the best GO tool","display_name":"SerbGO: searching for the best GO tool","publication_year":2008,"publication_date":"2008-05-14","ids":{"openalex":"https://openalex.org/W2134184781","doi":"https://doi.org/10.1093/nar/gkn256","mag":"2134184781","pmid":"https://pubmed.ncbi.nlm.nih.gov/18480123"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkn256","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn256","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_2/W368/18781196/gkn256.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/36/suppl_2/W368/18781196/gkn256.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011084022","display_name":"Jos\u00e9 Luis Mosquera","orcid":"https://orcid.org/0000-0002-7852-4993"},"institutions":[{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"J. L. Mosquera","raw_affiliation_strings":["Statistics and Bioinformatics Research Group, Departament d'Estad\u00edstica, Universitat de Barcelona. Av. Diagonal 645, 08028 Barcelona, Spain. jlmosquera@ir.vhebron.net","Statistics and Bioinformatics Research Group, Departament d'Estad\u00edstica, Universitat de Barcelona. Av. Diagonal 645, 08028 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Statistics and Bioinformatics Research Group, Departament d'Estad\u00edstica, Universitat de Barcelona. Av. Diagonal 645, 08028 Barcelona, Spain. jlmosquera@ir.vhebron.net","institution_ids":["https://openalex.org/I71999127"]},{"raw_affiliation_string":"Statistics and Bioinformatics Research Group, Departament d'Estad\u00edstica, Universitat de Barcelona. Av. Diagonal 645, 08028 Barcelona, Spain","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075738659","display_name":"\u00c1lex S\u00e1nchez\u2010Pla","orcid":"https://orcid.org/0000-0002-8673-7737"},"institutions":[{"id":"https://openalex.org/I4210102407","display_name":"Vall d'Hebron Institut de Recerca","ror":"https://ror.org/01d5vx451","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210102407","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"A. Sanchez-Pla","raw_affiliation_strings":["Statistics and Bioinformatics Research Group, Departament d'Estad\u0131 \u00b4stica, Universitat de Barcelona. Av. Diagonal 645, 08028 Barcelona and","Statistics and Bioinformatics Unit, IRHUVH. Passeig Vall d'Hebron 119-129, 08035 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Statistics and Bioinformatics Research Group, Departament d'Estad\u0131 \u00b4stica, Universitat de Barcelona. Av. Diagonal 645, 08028 Barcelona and","institution_ids":["https://openalex.org/I71999127"]},{"raw_affiliation_string":"Statistics and Bioinformatics Unit, IRHUVH. Passeig Vall d'Hebron 119-129, 08035 Barcelona, Spain","institution_ids":["https://openalex.org/I4210102407"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5011084022"],"corresponding_institution_ids":["https://openalex.org/I71999127"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.8297,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.72941026,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"36","issue":"Web Server","first_page":"W368","last_page":"W371"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9696999788284302,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9682999849319458,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9448161125183105},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.46521830558776855},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3286207318305969},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.32861950993537903}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9448161125183105},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46521830558776855},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3286207318305969},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.32861950993537903}],"mesh":[{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkn256","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn256","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_2/W368/18781196/gkn256.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:18480123","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18480123","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.532.8149","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.532.8149","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/36/suppl_2/W368.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:2447766","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2447766","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkn256","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn256","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_2/W368/18781196/gkn256.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.4699999988079071}],"awards":[],"funders":[{"id":"https://openalex.org/F4320323428","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2134184781.pdf","grobid_xml":"https://content.openalex.org/works/W2134184781.grobid-xml"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W114889313","https://openalex.org/W575683998","https://openalex.org/W2103017472","https://openalex.org/W2135230352","https://openalex.org/W2742731284","https://openalex.org/W2798588639"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W1971568933","https://openalex.org/W2013243191","https://openalex.org/W2061542922"],"abstract_inverted_index":{"In":[0],"recent":[1],"years,":[2],"the":[3,51,57,61,101,127,137,140,159,165,172,175,205],"scientific":[4],"community":[5],"has":[6],"provided":[7],"many":[8,39],"tools":[9,47,141,162,177],"to":[10,22,32,53,74,83,96,116,142,181],"assist":[11],"with":[12,50,158,171],"pathway":[13],"analysis.":[14],"Some":[15],"of":[16,26,45,56,103,106,139,161,174],"these":[17,46],"programs":[18,59],"can":[19,79,113,194],"be":[20,80,143,195],"used":[21,81],"manage":[23],"functional":[24],"annotation":[25],"gene":[27],"products,":[28],"others":[29],"are":[30,48,60],"oriented":[31],"exploring":[33],"and":[34,38,88,94,109,187],"analyzing":[35],"data":[36],"sets":[37],"allow":[40],"both":[41,111],"possibilities.":[42],"Potential":[43],"users":[44],"faced":[49],"necessity":[52],"decide":[54],"which":[55,90],"existing":[58],"most":[62],"appropriate":[63,119],"for":[64,85],"their":[65],"needs.":[66],"SerbGO":[67,124,183],"is":[68,125,184],"a":[69,131,150,169,191],"user-friendly":[70],"web":[71],"tool":[72],"created":[73],"facilitate":[75],"this":[76],"task.":[77],"It":[78,193],"(i)":[82],"search":[84],"specific":[86],"functionalities":[87,112],"determine":[89],"applications":[91,99],"provide":[92],"them":[93],"(ii)":[95],"compare":[97],"several":[98],"on":[100],"basis":[102],"different":[104],"types":[105],"functionalities.":[107],"Iterating":[108],"combining":[110],"easily":[114,155],"lead":[115],"selecting":[117],"an":[118,154],"tool.":[120],"Data":[121],"required":[122],"by":[123],"either":[126,197],"desired":[128],"capabilities":[129,166],"within":[130],"defined":[132],"Standard":[133],"Functionalities":[134],"Set":[135],"or":[136,168,203],"list":[138,160],"compared.":[144],"The":[145],"analysis":[146],"performed":[147],"carries":[148],"out":[149],"cross-classification":[151],"that":[152,163,178],"produces":[153],"readable":[156],"output":[157],"implement":[164],"demanded":[167],"table":[170],"categorization":[173],"GO":[176,206],"one":[179],"wishes":[180],"compare.":[182],"freely":[185],"available":[186],"does":[188],"not":[189],"require":[190],"login.":[192],"accessed":[196],"directly":[198],"at":[199,204],"our":[200],"server":[201],"(http://estbioinfo.stat.ub.es/apli/serbgo)":[202],"Consortium":[207],"website":[208],"(http://www.geneontology.org/GO.tools.microarray.shtml#serbgo).":[209]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":2}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
