{"id":"https://openalex.org/W2094739913","doi":"https://doi.org/10.1093/nar/gkn217","title":"ProdoNet: identification and visualization of prokaryotic gene regulatory and metabolic networks","display_name":"ProdoNet: identification and visualization of prokaryotic gene regulatory and metabolic networks","publication_year":2008,"publication_date":"2008-04-25","ids":{"openalex":"https://openalex.org/W2094739913","doi":"https://doi.org/10.1093/nar/gkn217","mag":"2094739913","pmid":"https://pubmed.ncbi.nlm.nih.gov/18440972"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkn217","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn217","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_2/W460/18781009/gkn217.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/36/suppl_2/W460/18781009/gkn217.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030486669","display_name":"Johannes Klein","orcid":"https://orcid.org/0000-0002-8553-2801"},"institutions":[{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Johannes Klein","raw_affiliation_strings":["Institute for Microbiology, Technische Universit\u00e4t Braunschweig, Spielmannstr. 7, D-38106 Braunschweig, Germany","Institute for Microbiology, Technische Universit\u00e4t Braunschweig, Spielmannstr. 7, D-38106 Braunschweig and 2 Department of Cell Biology, Helmholtz Centre for Infection Research, Inhoffenstr. 7, D-38124 Braunschweig, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Microbiology, Technische Universit\u00e4t Braunschweig, Spielmannstr. 7, D-38106 Braunschweig, Germany","institution_ids":[]},{"raw_affiliation_string":"Institute for Microbiology, Technische Universit\u00e4t Braunschweig, Spielmannstr. 7, D-38106 Braunschweig and 2 Department of Cell Biology, Helmholtz Centre for Infection Research, Inhoffenstr. 7, D-38124 Braunschweig, Germany","institution_ids":["https://openalex.org/I94509681"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070362764","display_name":"Stefan Leupold","orcid":"https://orcid.org/0000-0002-3525-0777"},"institutions":[{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stefan Leupold","raw_affiliation_strings":["Institute for Microbiology, Technische Universit\u00e4t Braunschweig, Spielmannstr. 7, D-38106 Braunschweig and 2 Department of Cell Biology, Helmholtz Centre for Infection Research, Inhoffenstr. 7, D-38124 Braunschweig, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Microbiology, Technische Universit\u00e4t Braunschweig, Spielmannstr. 7, D-38106 Braunschweig and 2 Department of Cell Biology, Helmholtz Centre for Infection Research, Inhoffenstr. 7, D-38124 Braunschweig, Germany","institution_ids":["https://openalex.org/I94509681"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109332116","display_name":"Richard M\u00fcnch","orcid":null},"institutions":[{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Richard M\u00fcnch","raw_affiliation_strings":["Institute for Microbiology, Technische Universit\u00e4t Braunschweig, Spielmannstr. 7, D-38106 Braunschweig and 2 Department of Cell Biology, Helmholtz Centre for Infection Research, Inhoffenstr. 7, D-38124 Braunschweig, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Microbiology, Technische Universit\u00e4t Braunschweig, Spielmannstr. 7, D-38106 Braunschweig and 2 Department of Cell Biology, Helmholtz Centre for Infection Research, Inhoffenstr. 7, D-38124 Braunschweig, Germany","institution_ids":["https://openalex.org/I94509681"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018600762","display_name":"Claudia Pommerenke","orcid":"https://orcid.org/0000-0002-9448-416X"},"institutions":[{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Claudia Pommerenke","raw_affiliation_strings":["Institute for Microbiology, Technische Universit\u00e4t Braunschweig, Spielmannstr. 7, D-38106 Braunschweig and 2 Department of Cell Biology, Helmholtz Centre for Infection Research, Inhoffenstr. 7, D-38124 Braunschweig, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Microbiology, Technische Universit\u00e4t Braunschweig, Spielmannstr. 7, D-38106 Braunschweig and 2 Department of Cell Biology, Helmholtz Centre for Infection Research, Inhoffenstr. 7, D-38124 Braunschweig, Germany","institution_ids":["https://openalex.org/I94509681"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082600284","display_name":"Thorsten Johl","orcid":null},"institutions":[{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Thorsten Johl","raw_affiliation_strings":["Institute for Microbiology, Technische Universit\u00e4t Braunschweig, Spielmannstr. 7, D-38106 Braunschweig and 2 Department of Cell Biology, Helmholtz Centre for Infection Research, Inhoffenstr. 7, D-38124 Braunschweig, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Microbiology, Technische Universit\u00e4t Braunschweig, Spielmannstr. 7, D-38106 Braunschweig and 2 Department of Cell Biology, Helmholtz Centre for Infection Research, Inhoffenstr. 7, D-38124 Braunschweig, Germany","institution_ids":["https://openalex.org/I94509681"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058652761","display_name":"Uwe K\u00e4rst","orcid":"https://orcid.org/0000-0002-1774-6787"},"institutions":[{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Uwe K\u00e4rst","raw_affiliation_strings":["Institute for Microbiology, Technische Universit\u00e4t Braunschweig, Spielmannstr. 7, D-38106 Braunschweig and 2 Department of Cell Biology, Helmholtz Centre for Infection Research, Inhoffenstr. 7, D-38124 Braunschweig, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Microbiology, Technische Universit\u00e4t Braunschweig, Spielmannstr. 7, D-38106 Braunschweig and 2 Department of Cell Biology, Helmholtz Centre for Infection Research, Inhoffenstr. 7, D-38124 Braunschweig, Germany","institution_ids":["https://openalex.org/I94509681"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088547780","display_name":"Lothar J\u00e4nsch","orcid":"https://orcid.org/0000-0002-5655-1181"},"institutions":[{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Lothar J\u00e4nsch","raw_affiliation_strings":["Institute for Microbiology, Technische Universit\u00e4t Braunschweig, Spielmannstr. 7, D-38106 Braunschweig and 2 Department of Cell Biology, Helmholtz Centre for Infection Research, Inhoffenstr. 7, D-38124 Braunschweig, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Microbiology, Technische Universit\u00e4t Braunschweig, Spielmannstr. 7, D-38106 Braunschweig and 2 Department of Cell Biology, Helmholtz Centre for Infection Research, Inhoffenstr. 7, D-38124 Braunschweig, Germany","institution_ids":["https://openalex.org/I94509681"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041916369","display_name":"Dieter Jahn","orcid":"https://orcid.org/0000-0002-4064-9205"},"institutions":[{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Dieter Jahn","raw_affiliation_strings":["Institute for Microbiology, Technische Universit\u00e4t Braunschweig, Spielmannstr. 7, D-38106 Braunschweig and 2 Department of Cell Biology, Helmholtz Centre for Infection Research, Inhoffenstr. 7, D-38124 Braunschweig, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Microbiology, Technische Universit\u00e4t Braunschweig, Spielmannstr. 7, D-38106 Braunschweig and 2 Department of Cell Biology, Helmholtz Centre for Infection Research, Inhoffenstr. 7, D-38124 Braunschweig, Germany","institution_ids":["https://openalex.org/I94509681"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010794754","display_name":"Ida Retter","orcid":"https://orcid.org/0000-0003-2858-9294"},"institutions":[{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ida Retter","raw_affiliation_strings":["Institute for Microbiology, Technische Universit\u00e4t Braunschweig, Spielmannstr. 7, D-38106 Braunschweig and 2 Department of Cell Biology, Helmholtz Centre for Infection Research, Inhoffenstr. 7, D-38124 Braunschweig, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Microbiology, Technische Universit\u00e4t Braunschweig, Spielmannstr. 7, D-38106 Braunschweig and 2 Department of Cell Biology, Helmholtz Centre for Infection Research, Inhoffenstr. 7, D-38124 Braunschweig, Germany","institution_ids":["https://openalex.org/I94509681"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5030486669"],"corresponding_institution_ids":["https://openalex.org/I94509681"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.0773,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.76310404,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"36","issue":"suppl_2","first_page":"W460","last_page":"W464"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8596194386482239},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6850927472114563},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6738582849502563},{"id":"https://openalex.org/keywords/kegg","display_name":"KEGG","score":0.5779815912246704},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.5668925642967224},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.510489821434021},{"id":"https://openalex.org/keywords/operon","display_name":"Operon","score":0.4993727207183838},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.48404091596603394},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.4644921123981476},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4521397352218628},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.4447159767150879},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4442233443260193},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.43816694617271423},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.414247065782547},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.4120488166809082},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.2641885280609131},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.11748617887496948},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.11402422189712524}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8596194386482239},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6850927472114563},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6738582849502563},{"id":"https://openalex.org/C152724338","wikidata":"https://www.wikidata.org/wiki/Q909442","display_name":"KEGG","level":5,"score":0.5779815912246704},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.5668925642967224},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.510489821434021},{"id":"https://openalex.org/C203075996","wikidata":"https://www.wikidata.org/wiki/Q139677","display_name":"Operon","level":4,"score":0.4993727207183838},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.48404091596603394},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.4644921123981476},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4521397352218628},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.4447159767150879},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4442233443260193},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.43816694617271423},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.414247065782547},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.4120488166809082},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.2641885280609131},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.11748617887496948},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.11402422189712524},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009876","descriptor_name":"Operon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009876","descriptor_name":"Operon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009876","descriptor_name":"Operon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011550","descriptor_name":"Pseudomonas aeruginosa","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011550","descriptor_name":"Pseudomonas aeruginosa","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011550","descriptor_name":"Pseudomonas aeruginosa","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011550","descriptor_name":"Pseudomonas aeruginosa","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011550","descriptor_name":"Pseudomonas aeruginosa","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011550","descriptor_name":"Pseudomonas aeruginosa","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018085","descriptor_name":"Regulon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018085","descriptor_name":"Regulon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018085","descriptor_name":"Regulon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkn217","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn217","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_2/W460/18781009/gkn217.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:18440972","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18440972","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2447764","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2447764","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkn217","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn217","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_2/W460/18781009/gkn217.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320882","display_name":"Volkswagen Foundation","ror":"https://ror.org/03bsmfz84"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2094739913.pdf","grobid_xml":"https://content.openalex.org/works/W2094739913.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W1547075801","https://openalex.org/W2010417142","https://openalex.org/W2055016234","https://openalex.org/W2082351454","https://openalex.org/W2096525273","https://openalex.org/W2100332892","https://openalex.org/W2101292724","https://openalex.org/W2107522712","https://openalex.org/W2111973517","https://openalex.org/W2115490768","https://openalex.org/W2119958068","https://openalex.org/W2123060905","https://openalex.org/W2127057035","https://openalex.org/W2128601422","https://openalex.org/W2129149283","https://openalex.org/W2130085763","https://openalex.org/W2135805255","https://openalex.org/W2137531873","https://openalex.org/W2137993400","https://openalex.org/W2140498399","https://openalex.org/W2140635350","https://openalex.org/W2152109567","https://openalex.org/W2161062388","https://openalex.org/W2165674132","https://openalex.org/W2165741325","https://openalex.org/W4211208250","https://openalex.org/W4230392683","https://openalex.org/W4239678514","https://openalex.org/W6678274143","https://openalex.org/W6678987472","https://openalex.org/W6679134093","https://openalex.org/W6813364610"],"related_works":["https://openalex.org/W1964572291","https://openalex.org/W4387948744","https://openalex.org/W1987520879","https://openalex.org/W184793361","https://openalex.org/W2352732738","https://openalex.org/W2123060905","https://openalex.org/W2559588208","https://openalex.org/W1608194938","https://openalex.org/W4318778067","https://openalex.org/W1923384484"],"abstract_inverted_index":{"ProdoNet":[0,77,113,133],"is":[1,118,134],"a":[2,23],"web-based":[3],"application":[4],"for":[5,81,86],"the":[6,12,28,42,54,68,71,79,87,121,129],"mapping":[7],"of":[8,26,56,58,70,89,101,107,125],"prokaryotic":[9],"genes":[10,35,57],"and":[11,19,36,85,91,128],"corresponding":[13],"proteins":[14],"to":[15,44,67],"common":[16],"gene":[17,61],"regulatory":[18],"metabolic":[20,46],"networks.":[21],"For":[22],"given":[24],"list":[25],"genes,":[27],"system":[29],"detects":[30],"shared":[31,45],"operons,":[32],"identifies":[33],"co-expressed":[34],"deduces":[37],"joint":[38],"regulators.":[39],"In":[40,74],"addition,":[41],"contribution":[43],"pathways":[47],"becomes":[48],"visible":[49],"on":[50,115,120],"KEGG":[51],"maps.":[52],"Furthermore,":[53],"co-occurrence":[55],"interest":[59],"in":[60],"expression":[62],"profiles":[63],"can":[64],"be":[65],"added":[66],"visualization":[69],"global":[72],"network.":[73],"this":[75],"way,":[76],"provides":[78],"basis":[80],"functional":[82],"genomics":[83],"approaches":[84],"interpretation":[88],"transcriptomics":[90],"proteomics":[92],"data.":[93],"As":[94],"an":[95,99,102],"example,":[96],"we":[97],"present":[98],"investigation":[100],"experimental":[103],"membrane":[104],"subproteome":[105],"analysis":[106],"Pseudomonas":[108],"aeruginosa":[109],"with":[110],"ProdoNet.":[111],"The":[112],"dataset":[114],"transcriptional":[116],"regulation":[117],"based":[119],"PRODORIC":[122],"Prokaryotic":[123],"Database":[124],"Gene":[126],"Regulation":[127],"Virtual":[130],"Footprint":[131],"tool.":[132],"accessible":[135],"at":[136],"http://www.prodonet.tu-bs.de.":[137]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":2}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}