{"id":"https://openalex.org/W18442995","doi":"https://doi.org/10.1093/nar/gkn211","title":"SONGS OF THE SUBWAY","display_name":"SONGS OF THE SUBWAY","publication_year":2005,"publication_date":"2005-01-01","ids":{"openalex":"https://openalex.org/W18442995","doi":"https://doi.org/10.1093/nar/gkn211","mag":"18442995"},"language":"en","primary_location":{"id":"mag:18442995","is_oa":false,"landing_page_url":"https://dialnet.unirioja.es/servlet/articulo?codigo=1361352","pdf_url":null,"source":{"id":"https://openalex.org/S79617935","display_name":"Mechanical Engineering","issn_l":"0025-6501","issn":["0025-6501","1943-5649"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310316053","host_organization_name":"ASM International","host_organization_lineage":["https://openalex.org/P4310316053"],"host_organization_lineage_names":["ASM International"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mechanical Engineering","raw_type":null},"type":"article","indexed_in":[],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090916191","display_name":"Chuck Beardsley","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Chuck Beardsley","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5090916191"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.00234886,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"127","issue":"12","first_page":"68","last_page":"41"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.0007999999797903001,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.5016396045684814},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3682858943939209},{"id":"https://openalex.org/keywords/engineering-drawing","display_name":"Engineering drawing","score":0.3654381036758423},{"id":"https://openalex.org/keywords/mechanical-engineering","display_name":"Mechanical engineering","score":0.3468877971172333},{"id":"https://openalex.org/keywords/forensic-engineering","display_name":"Forensic engineering","score":0.3209368586540222}],"concepts":[{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.5016396045684814},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3682858943939209},{"id":"https://openalex.org/C199639397","wikidata":"https://www.wikidata.org/wiki/Q1788588","display_name":"Engineering drawing","level":1,"score":0.3654381036758423},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.3468877971172333},{"id":"https://openalex.org/C77595967","wikidata":"https://www.wikidata.org/wiki/Q3151013","display_name":"Forensic engineering","level":1,"score":0.3209368586540222}],"mesh":[],"locations_count":1,"locations":[{"id":"mag:18442995","is_oa":false,"landing_page_url":"https://dialnet.unirioja.es/servlet/articulo?codigo=1361352","pdf_url":null,"source":{"id":"https://openalex.org/S79617935","display_name":"Mechanical Engineering","issn_l":"0025-6501","issn":["0025-6501","1943-5649"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310316053","host_organization_name":"ASM International","host_organization_lineage":["https://openalex.org/P4310316053"],"host_organization_lineage_names":["ASM International"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mechanical Engineering","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":1,"referenced_works":["https://openalex.org/W2400297371"],"related_works":["https://openalex.org/W2264384637","https://openalex.org/W999803032","https://openalex.org/W132590065","https://openalex.org/W178816065","https://openalex.org/W1555952891","https://openalex.org/W139082506","https://openalex.org/W953595826","https://openalex.org/W152278289","https://openalex.org/W74902142","https://openalex.org/W155747533","https://openalex.org/W2764920196","https://openalex.org/W126267677","https://openalex.org/W163908963","https://openalex.org/W105155114","https://openalex.org/W332861852","https://openalex.org/W60871645","https://openalex.org/W7785723","https://openalex.org/W21293170","https://openalex.org/W53465837","https://openalex.org/W26978781"],"abstract_inverted_index":{"We":[0],"have":[1],"developed":[2],"PVS":[3,50,71,99,121,143],"(Protein":[4],"Variability":[5],"Server),":[6],"a":[7,32,46,67,110,117,124],"web-based":[8],"tool":[9],"that":[10,53,77],"uses":[11],"several":[12],"variability":[13,20,27,65,92,112],"metrics":[14],"to":[15,31,80,95,132],"compute":[16],"the":[17,39,43,64,82,102,106,133,137],"absolute":[18],"site":[19],"in":[21,42,66,105,116],"multiple":[22],"protein-sequence":[23],"alignments":[24],"(MSAs).":[25],"The":[26],"is":[28,144],"then":[29],"assigned":[30],"user-selected":[33],"reference":[34],"sequence":[35,41,91],"consisting":[36],"of":[37,84,139],"either":[38],"first":[40],"alignment":[44],"or":[45],"consensus":[47],"sequence.":[48],"Subsequently,":[49],"performs":[51],"tasks":[52,76],"are":[54,78],"relevant":[55,68,118],"for":[56,136],"structure-function":[57],"studies,":[58],"such":[59],"as":[60],"plotting":[61],"and":[62],"visualizing":[63],"3D-structure.":[69,119],"Neatly,":[70],"also":[72],"implements":[73],"some":[74],"other":[75],"thought":[79],"facilitate":[81],"design":[83],"epitope":[85],"discovery-driven":[86],"vaccines":[87],"against":[88],"pathogens":[89],"where":[90],"largely":[93],"contributes":[94],"immune":[96],"evasion.":[97],"Thus,":[98],"can":[100,122,128],"return":[101,123],"conserved":[103,140],"fragments":[104],"MSA-as":[107],"defined":[108],"by":[109],"user-provided":[111],"threshold-and":[113],"locate":[114],"them":[115],"Furthermore,":[120],"variability-masked":[125],"sequence,":[126],"which":[127],"be":[129],"directly":[130],"submitted":[131],"RANKPEP":[134],"server":[135],"prediction":[138],"T-cell":[141],"epitopes.":[142],"freely":[145],"available":[146],"at:":[147],"http://imed.med.ucm.es/PVS/.":[148]},"counts_by_year":[],"updated_date":"2026-06-17T08:01:34.144755","created_date":"2016-06-24T00:00:00"}