{"id":"https://openalex.org/W2127096898","doi":"https://doi.org/10.1093/nar/gkn179","title":"The CGView Server: a comparative genomics tool for circular genomes","display_name":"The CGView Server: a comparative genomics tool for circular genomes","publication_year":2008,"publication_date":"2008-04-15","ids":{"openalex":"https://openalex.org/W2127096898","doi":"https://doi.org/10.1093/nar/gkn179","mag":"2127096898","pmid":"https://pubmed.ncbi.nlm.nih.gov/18411202"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkn179","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn179","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_2/W181/7623853/gkn179.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/36/suppl_2/W181/7623853/gkn179.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088336121","display_name":"Jason R. Grant","orcid":"https://orcid.org/0000-0002-1197-1131"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"J. R. Grant","raw_affiliation_strings":["Department of Agricultural, Food and Nutritional Science, University of Alberta, Canada","Department of Agricultural Food, and Nutritional Science, University of Alberta, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Agricultural, Food and Nutritional Science, University of Alberta, Canada","institution_ids":["https://openalex.org/I154425047"]},{"raw_affiliation_string":"Department of Agricultural Food, and Nutritional Science, University of Alberta, Canada","institution_ids":["https://openalex.org/I154425047"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059930476","display_name":"Paul Stothard","orcid":"https://orcid.org/0000-0003-4263-969X"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"P. Stothard","raw_affiliation_strings":["Department of Agricultural, Food and Nutritional Science, University of Alberta, Canada T6G 2P5"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Agricultural, Food and Nutritional Science, University of Alberta, Canada T6G 2P5","institution_ids":["https://openalex.org/I154425047"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5059930476"],"corresponding_institution_ids":["https://openalex.org/I154425047"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":4.6332,"has_fulltext":false,"cited_by_count":1526,"citation_normalized_percentile":{"value":0.95550442,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"36","issue":"Web Server","first_page":"W181","last_page":"W184"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11470","display_name":"Legume Nitrogen Fixing Symbiosis","score":0.9889000058174133,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7774480581283569},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7750028967857361},{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.7663276195526123},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"Comparative genomics","score":0.5761521458625793},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.48932215571403503},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4788091778755188},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.47098490595817566},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.46074238419532776},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.44820502400398254},{"id":"https://openalex.org/keywords/sequence-analysis","display_name":"Sequence analysis","score":0.43277424573898315},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.4276063144207001},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.42746812105178833},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.41086500883102417},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3826628625392914},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.08687290549278259}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7774480581283569},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7750028967857361},{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.7663276195526123},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.5761521458625793},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.48932215571403503},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4788091778755188},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.47098490595817566},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.46074238419532776},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.44820502400398254},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.43277424573898315},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.4276063144207001},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.42746812105178833},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.41086500883102417},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3826628625392914},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.08687290549278259},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004270","descriptor_name":"DNA, Circular","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004270","descriptor_name":"DNA, Circular","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004270","descriptor_name":"DNA, Circular","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010957","descriptor_name":"Plasmids","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010957","descriptor_name":"Plasmids","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010957","descriptor_name":"Plasmids","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054628","descriptor_name":"Genome, Chloroplast","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054628","descriptor_name":"Genome, Chloroplast","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054628","descriptor_name":"Genome, Chloroplast","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054629","descriptor_name":"Genome, Mitochondrial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054629","descriptor_name":"Genome, Mitochondrial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054629","descriptor_name":"Genome, Mitochondrial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkn179","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn179","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_2/W181/7623853/gkn179.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:18411202","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18411202","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2447734","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2447734","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkn179","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn179","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_2/W181/7623853/gkn179.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2127096898.pdf"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1964918240","https://openalex.org/W2096525273","https://openalex.org/W2118831220","https://openalex.org/W2121374483","https://openalex.org/W2145477956","https://openalex.org/W2151309250","https://openalex.org/W2155606054","https://openalex.org/W2156273926","https://openalex.org/W2156524568","https://openalex.org/W2157748357","https://openalex.org/W2162173039","https://openalex.org/W2168783124","https://openalex.org/W2740984310","https://openalex.org/W4239678514"],"related_works":["https://openalex.org/W4229706141","https://openalex.org/W2150215096","https://openalex.org/W4238935654","https://openalex.org/W4232188079","https://openalex.org/W1530540721","https://openalex.org/W2163261777","https://openalex.org/W2415364668","https://openalex.org/W2118389484","https://openalex.org/W2491053339","https://openalex.org/W4230992309"],"abstract_inverted_index":{"The":[0,50,68,114,185],"CGView":[1,115,186],"Server":[2,116,187],"generates":[3],"graphical":[4,78],"maps":[5,167],"of":[6,44,91,94,104,138,143,156,163,175],"circular":[7],"genomes":[8,64],"that":[9],"show":[10],"sequence":[11,19,58,66,183],"features,":[12],"base":[13],"composition":[14],"plots,":[15],"analysis":[16,36],"results":[17,70],"and":[18,71,87,108,132,147],"similarity":[20],"plots.":[21],"Sequences":[22],"can":[23,38,117,133,158,168,188],"be":[24,39,118,159,170,189],"supplied":[25],"in":[26,41,135,149,161],"raw,":[27],"FASTA,":[28],"GenBank":[29],"or":[30,35,65,84,129],"EMBL":[31],"format.":[32],"Additional":[33],"feature":[34,72],"information":[37,73],"submitted":[40],"the":[42,56,81,110,136],"form":[43],"GFF":[45],"(General":[46],"Feature":[47],"Format)":[48],"files.":[49],"server":[51],"uses":[52],"BLAST":[53,69],"to":[54,59,61,76,100,120,172],"compare":[55],"primary":[57],"up":[60],"three":[62],"comparison":[63,165],"sets.":[67],"are":[74,98,106,112],"converted":[75],"a":[77,92,154,164,176],"map":[79],"showing":[80],"entire":[82],"sequence,":[83],"an":[85],"expanded":[86],"more":[88],"detailed":[89],"view":[90],"region":[93],"interest.":[95],"Several":[96],"options":[97],"included":[99],"control":[101],"which":[102],"types":[103],"features":[105,111,122],"displayed":[107],"how":[109],"drawn.":[113],"used":[119,160,171],"visualize":[121,173],"associated":[123],"with":[124],"any":[125],"bacterial,":[126],"plasmid,":[127],"chloroplast":[128],"mitochondrial":[130],"genome,":[131,166],"aid":[134],"identification":[137],"conserved":[139],"genome":[140,178],"segments,":[141],"instances":[142],"horizontal":[144],"gene":[145,150],"transfer,":[146],"differences":[148],"copy":[151],"number.":[152],"Because":[153],"collection":[155],"sequences":[157],"place":[162],"also":[169],"regions":[174],"known":[177],"covered":[179],"by":[180],"newly":[181],"obtained":[182],"reads.":[184],"accessed":[190],"at":[191],"http://stothard.afns.ualberta.ca/cgview_server/":[192]},"counts_by_year":[{"year":2026,"cited_by_count":41},{"year":2025,"cited_by_count":118},{"year":2024,"cited_by_count":190},{"year":2023,"cited_by_count":201},{"year":2022,"cited_by_count":226},{"year":2021,"cited_by_count":227},{"year":2020,"cited_by_count":134},{"year":2019,"cited_by_count":85},{"year":2018,"cited_by_count":72},{"year":2017,"cited_by_count":61},{"year":2016,"cited_by_count":35},{"year":2015,"cited_by_count":33},{"year":2014,"cited_by_count":23},{"year":2013,"cited_by_count":24},{"year":2012,"cited_by_count":22}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}