{"id":"https://openalex.org/W2043338013","doi":"https://doi.org/10.1093/nar/gkm998","title":"AAindex: amino acid index database, progress report 2008","display_name":"AAindex: amino acid index database, progress report 2008","publication_year":2007,"publication_date":"2007-11-13","ids":{"openalex":"https://openalex.org/W2043338013","doi":"https://doi.org/10.1093/nar/gkm998","mag":"2043338013","pmid":"https://pubmed.ncbi.nlm.nih.gov/17998252"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkm998","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm998","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_1/D202/7637341/gkm998.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/36/suppl_1/D202/7637341/gkm998.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039336067","display_name":"Shuichi Kawashima","orcid":"https://orcid.org/0000-0001-7883-3756"},"institutions":[{"id":"https://openalex.org/I108865366","display_name":"Human Genome Sciences (United States)","ror":"https://ror.org/05k1yyh03","country_code":"US","type":"company","lineage":["https://openalex.org/I108865366"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"S. Kawashima","raw_affiliation_strings":["Laboratory of Genome Database, Human Genome Center, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokane-dai Minato-ku Tokyo 108-8639, Japan. shuichi@hgc.jp","Laboratory of Genome Database, Human Genome Center, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokane-dai Minato-ku Tokyo 108-8639, Japan"],"affiliations":[{"raw_affiliation_string":"Laboratory of Genome Database, Human Genome Center, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokane-dai Minato-ku Tokyo 108-8639, Japan. shuichi@hgc.jp","institution_ids":["https://openalex.org/I108865366"]},{"raw_affiliation_string":"Laboratory of Genome Database, Human Genome Center, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokane-dai Minato-ku Tokyo 108-8639, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038444805","display_name":"Piotr Pokarowski","orcid":null},"institutions":[{"id":"https://openalex.org/I108403487","display_name":"Warsaw University of Technology","ror":"https://ror.org/00y0xnp53","country_code":"PL","type":"education","lineage":["https://openalex.org/I108403487"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP","PL"],"is_corresponding":false,"raw_author_name":"P. Pokarowski","raw_affiliation_strings":["Laboratory of Genome Database, Human Genome Center, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokane-dai Minato-ku Tokyo 108-8639, Japan, 2 Institute of Informatics, Faculty of Mathematics, Informatics and Mechanics, Warsaw University, 02-097 Warsaw, 3 Faculty of Geodesy and Cartography, Warsaw University of Technology, 00-661 Warsaw, 4 Laboratory of Theory of Biopolymers, Faculty of Chemistry, Warsaw University, 02-093 Warsaw, Poland and 5 Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan","Warsaw University of Technology, Warsaw, Poland"],"affiliations":[{"raw_affiliation_string":"Laboratory of Genome Database, Human Genome Center, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokane-dai Minato-ku Tokyo 108-8639, Japan, 2 Institute of Informatics, Faculty of Mathematics, Informatics and Mechanics, Warsaw University, 02-097 Warsaw, 3 Faculty of Geodesy and Cartography, Warsaw University of Technology, 00-661 Warsaw, 4 Laboratory of Theory of Biopolymers, Faculty of Chemistry, Warsaw University, 02-093 Warsaw, Poland and 5 Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan","institution_ids":["https://openalex.org/I108403487","https://openalex.org/I74801974"]},{"raw_affiliation_string":"Warsaw University of Technology, Warsaw, Poland","institution_ids":["https://openalex.org/I108403487"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013979407","display_name":"Maria Pokarowska","orcid":null},"institutions":[{"id":"https://openalex.org/I108403487","display_name":"Warsaw University of Technology","ror":"https://ror.org/00y0xnp53","country_code":"PL","type":"education","lineage":["https://openalex.org/I108403487"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP","PL"],"is_corresponding":false,"raw_author_name":"M. Pokarowska","raw_affiliation_strings":["Laboratory of Genome Database, Human Genome Center, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokane-dai Minato-ku Tokyo 108-8639, Japan, 2 Institute of Informatics, Faculty of Mathematics, Informatics and Mechanics, Warsaw University, 02-097 Warsaw, 3 Faculty of Geodesy and Cartography, Warsaw University of Technology, 00-661 Warsaw, 4 Laboratory of Theory of Biopolymers, Faculty of Chemistry, Warsaw University, 02-093 Warsaw, Poland and 5 Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan","Warsaw University of Technology, Warsaw, Poland"],"affiliations":[{"raw_affiliation_string":"Laboratory of Genome Database, Human Genome Center, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokane-dai Minato-ku Tokyo 108-8639, Japan, 2 Institute of Informatics, Faculty of Mathematics, Informatics and Mechanics, Warsaw University, 02-097 Warsaw, 3 Faculty of Geodesy and Cartography, Warsaw University of Technology, 00-661 Warsaw, 4 Laboratory of Theory of Biopolymers, Faculty of Chemistry, Warsaw University, 02-093 Warsaw, Poland and 5 Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan","institution_ids":["https://openalex.org/I108403487","https://openalex.org/I74801974"]},{"raw_affiliation_string":"Warsaw University of Technology, Warsaw, Poland","institution_ids":["https://openalex.org/I108403487"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025085688","display_name":"Andrzej Koli\u0144ski","orcid":"https://orcid.org/0000-0002-8830-2315"},"institutions":[{"id":"https://openalex.org/I108403487","display_name":"Warsaw University of Technology","ror":"https://ror.org/00y0xnp53","country_code":"PL","type":"education","lineage":["https://openalex.org/I108403487"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP","PL"],"is_corresponding":false,"raw_author_name":"A. Kolinski","raw_affiliation_strings":["Laboratory of Genome Database, Human Genome Center, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokane-dai Minato-ku Tokyo 108-8639, Japan, 2 Institute of Informatics, Faculty of Mathematics, Informatics and Mechanics, Warsaw University, 02-097 Warsaw, 3 Faculty of Geodesy and Cartography, Warsaw University of Technology, 00-661 Warsaw, 4 Laboratory of Theory of Biopolymers, Faculty of Chemistry, Warsaw University, 02-093 Warsaw, Poland and 5 Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan","Warsaw University of Technology, Warsaw, Poland"],"affiliations":[{"raw_affiliation_string":"Laboratory of Genome Database, Human Genome Center, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokane-dai Minato-ku Tokyo 108-8639, Japan, 2 Institute of Informatics, Faculty of Mathematics, Informatics and Mechanics, Warsaw University, 02-097 Warsaw, 3 Faculty of Geodesy and Cartography, Warsaw University of Technology, 00-661 Warsaw, 4 Laboratory of Theory of Biopolymers, Faculty of Chemistry, Warsaw University, 02-093 Warsaw, Poland and 5 Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan","institution_ids":["https://openalex.org/I108403487","https://openalex.org/I74801974"]},{"raw_affiliation_string":"Warsaw University of Technology, Warsaw, Poland","institution_ids":["https://openalex.org/I108403487"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031153467","display_name":"Toshiaki Katayama","orcid":"https://orcid.org/0000-0003-2391-0384"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]},{"id":"https://openalex.org/I108403487","display_name":"Warsaw University of Technology","ror":"https://ror.org/00y0xnp53","country_code":"PL","type":"education","lineage":["https://openalex.org/I108403487"]}],"countries":["JP","PL"],"is_corresponding":false,"raw_author_name":"T. Katayama","raw_affiliation_strings":["Laboratory of Genome Database, Human Genome Center, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokane-dai Minato-ku Tokyo 108-8639, Japan, 2 Institute of Informatics, Faculty of Mathematics, Informatics and Mechanics, Warsaw University, 02-097 Warsaw, 3 Faculty of Geodesy and Cartography, Warsaw University of Technology, 00-661 Warsaw, 4 Laboratory of Theory of Biopolymers, Faculty of Chemistry, Warsaw University, 02-093 Warsaw, Poland and 5 Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan","Warsaw University of Technology, Warsaw, Poland"],"affiliations":[{"raw_affiliation_string":"Laboratory of Genome Database, Human Genome Center, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokane-dai Minato-ku Tokyo 108-8639, Japan, 2 Institute of Informatics, Faculty of Mathematics, Informatics and Mechanics, Warsaw University, 02-097 Warsaw, 3 Faculty of Geodesy and Cartography, Warsaw University of Technology, 00-661 Warsaw, 4 Laboratory of Theory of Biopolymers, Faculty of Chemistry, Warsaw University, 02-093 Warsaw, Poland and 5 Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan","institution_ids":["https://openalex.org/I108403487","https://openalex.org/I74801974"]},{"raw_affiliation_string":"Warsaw University of Technology, Warsaw, Poland","institution_ids":["https://openalex.org/I108403487"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058022821","display_name":"Minoru Kanehisa","orcid":"https://orcid.org/0000-0001-6123-540X"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]},{"id":"https://openalex.org/I108403487","display_name":"Warsaw University of Technology","ror":"https://ror.org/00y0xnp53","country_code":"PL","type":"education","lineage":["https://openalex.org/I108403487"]}],"countries":["JP","PL"],"is_corresponding":false,"raw_author_name":"M. Kanehisa","raw_affiliation_strings":["Laboratory of Genome Database, Human Genome Center, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokane-dai Minato-ku Tokyo 108-8639, Japan, 2 Institute of Informatics, Faculty of Mathematics, Informatics and Mechanics, Warsaw University, 02-097 Warsaw, 3 Faculty of Geodesy and Cartography, Warsaw University of Technology, 00-661 Warsaw, 4 Laboratory of Theory of Biopolymers, Faculty of Chemistry, Warsaw University, 02-093 Warsaw, Poland and 5 Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan","Warsaw University of Technology, Warsaw, Poland"],"affiliations":[{"raw_affiliation_string":"Laboratory of Genome Database, Human Genome Center, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokane-dai Minato-ku Tokyo 108-8639, Japan, 2 Institute of Informatics, Faculty of Mathematics, Informatics and Mechanics, Warsaw University, 02-097 Warsaw, 3 Faculty of Geodesy and Cartography, Warsaw University of Technology, 00-661 Warsaw, 4 Laboratory of Theory of Biopolymers, Faculty of Chemistry, Warsaw University, 02-093 Warsaw, Poland and 5 Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan","institution_ids":["https://openalex.org/I108403487","https://openalex.org/I74801974"]},{"raw_affiliation_string":"Warsaw University of Technology, Warsaw, Poland","institution_ids":["https://openalex.org/I108403487"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5039336067"],"corresponding_institution_ids":["https://openalex.org/I108865366"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":7.5016,"has_fulltext":true,"cited_by_count":1165,"citation_normalized_percentile":{"value":0.98121835,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"36","issue":"Database","first_page":"D202","last_page":"D205"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/file-transfer-protocol","display_name":"File Transfer Protocol","score":0.861647367477417},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6960862278938293},{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.6883929371833801},{"id":"https://openalex.org/keywords/bin","display_name":"Bin","score":0.49743297696113586},{"id":"https://openalex.org/keywords/index","display_name":"Index (typography)","score":0.4521295726299286},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.43360036611557007},{"id":"https://openalex.org/keywords/amino-acid-substitution","display_name":"Amino acid substitution","score":0.42047643661499023},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3965144455432892},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3243710398674011},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24121540784835815},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.21025025844573975},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.15505200624465942},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.11885419487953186},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.1123245358467102},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.1097758412361145},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08916205167770386}],"concepts":[{"id":"https://openalex.org/C169485995","wikidata":"https://www.wikidata.org/wiki/Q42283","display_name":"File Transfer Protocol","level":3,"score":0.861647367477417},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6960862278938293},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.6883929371833801},{"id":"https://openalex.org/C156273044","wikidata":"https://www.wikidata.org/wiki/Q4913766","display_name":"Bin","level":2,"score":0.49743297696113586},{"id":"https://openalex.org/C2777382242","wikidata":"https://www.wikidata.org/wiki/Q6017816","display_name":"Index (typography)","level":2,"score":0.4521295726299286},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.43360036611557007},{"id":"https://openalex.org/C2993683473","wikidata":"https://www.wikidata.org/wiki/Q30693176","display_name":"Amino acid substitution","level":4,"score":0.42047643661499023},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3965144455432892},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3243710398674011},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24121540784835815},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.21025025844573975},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.15505200624465942},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.11885419487953186},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.1123245358467102},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.1097758412361145},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08916205167770386}],"mesh":[{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkm998","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm998","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_1/D202/7637341/gkm998.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:17998252","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17998252","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2238890","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2238890","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkm998","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm998","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_1/D202/7637341/gkm998.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G12401395","display_name":null,"funder_award_id":"Technology","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G4611969921","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"},{"id":"https://openalex.org/G4864544293","display_name":null,"funder_award_id":"Japan","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"},{"id":"https://openalex.org/G7485138276","display_name":null,"funder_award_id":"Technology","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"},{"id":"https://openalex.org/G8044579487","display_name":null,"funder_award_id":"Japan","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"}],"funders":[{"id":"https://openalex.org/F4320320912","display_name":"Ministry of Education, Culture, Sports, Science and Technology","ror":"https://ror.org/048rj2z13"},{"id":"https://openalex.org/F4320322832","display_name":"University of Tokyo","ror":"https://ror.org/057zh3y96"},{"id":"https://openalex.org/F4320334789","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19"},{"id":"https://openalex.org/F4320335525","display_name":"Institute for Chemical Research, Kyoto University","ror":null},{"id":"https://openalex.org/F4320336716","display_name":"Institute of Medical Science, University of Tokyo","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2043338013.pdf","grobid_xml":"https://content.openalex.org/works/W2043338013.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W45319280","https://openalex.org/W1482515444","https://openalex.org/W1562015000","https://openalex.org/W1816488618","https://openalex.org/W1991522486","https://openalex.org/W1996423252","https://openalex.org/W2014731953","https://openalex.org/W2053411993","https://openalex.org/W2075826885","https://openalex.org/W2139319441","https://openalex.org/W2141702919","https://openalex.org/W2153240444","https://openalex.org/W2160156676","https://openalex.org/W2164260969","https://openalex.org/W2164492849","https://openalex.org/W4213345021"],"related_works":["https://openalex.org/W2107701374","https://openalex.org/W2349516242","https://openalex.org/W2378353542","https://openalex.org/W2358003099","https://openalex.org/W2373243130","https://openalex.org/W2950072893","https://openalex.org/W1616588898","https://openalex.org/W3186625252","https://openalex.org/W2899747918","https://openalex.org/W2089387174"],"abstract_inverted_index":{"AAindex":[0,32,38],"is":[1],"a":[2,24,34],"database":[3,77],"of":[4,13,18,26,40,50],"numerical":[5,52],"indices":[6],"representing":[7],"various":[8],"physicochemical":[9],"and":[10,16,61],"biochemical":[11],"properties":[12],"amino":[14,19,47,57],"acids":[15],"pairs":[17],"acids.":[20],"We":[21],"have":[22],"added":[23],"collection":[25],"protein":[27,66],"contact":[28,67],"potentials":[29],"to":[30],"the":[31,46,56,64,82],"as":[33],"new":[35],"section.":[36],"Accordingly":[37],"consists":[39],"three":[41],"sections":[42],"now:":[43],"AAindex1":[44],"for":[45,55,63],"acid":[48,58],"index":[49],"20":[51],"values,":[53],"AAindex2":[54],"substitution":[59],"matrix":[60],"AAindex3":[62],"statistical":[65],"potentials.":[68],"All":[69],"data":[70],"are":[71],"derived":[72],"from":[73],"published":[74],"literature.":[75],"The":[76],"can":[78],"be":[79],"accessed":[80],"through":[81],"DBGET/LinkDB":[83],"system":[84],"at":[85],"GenomeNet":[86],"(http://www.genome.jp/dbget-bin/www_bfind?aaindex)":[87],"or":[88],"downloaded":[89],"by":[90],"anonymous":[91],"FTP":[92],"(ftp://ftp.genome.jp/pub/db/community/aaindex/).":[93]},"counts_by_year":[{"year":2026,"cited_by_count":14},{"year":2025,"cited_by_count":95},{"year":2024,"cited_by_count":96},{"year":2023,"cited_by_count":90},{"year":2022,"cited_by_count":93},{"year":2021,"cited_by_count":101},{"year":2020,"cited_by_count":89},{"year":2019,"cited_by_count":77},{"year":2018,"cited_by_count":78},{"year":2017,"cited_by_count":46},{"year":2016,"cited_by_count":54},{"year":2015,"cited_by_count":56},{"year":2014,"cited_by_count":57},{"year":2013,"cited_by_count":62},{"year":2012,"cited_by_count":52}],"updated_date":"2026-03-16T09:10:04.655348","created_date":"2025-10-10T00:00:00"}
