{"id":"https://openalex.org/W1970679073","doi":"https://doi.org/10.1093/nar/gkm976","title":"YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae","display_name":"YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae","publication_year":2007,"publication_date":"2007-11-21","ids":{"openalex":"https://openalex.org/W1970679073","doi":"https://doi.org/10.1093/nar/gkm976","mag":"1970679073","pmid":"https://pubmed.ncbi.nlm.nih.gov/18032429"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkm976","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm976","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_1/D132/7636267/gkm976.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/36/suppl_1/D132/7636267/gkm976.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025560387","display_name":"Pedro T. Monteiro","orcid":"https://orcid.org/0000-0002-7934-5495"},"institutions":[{"id":"https://openalex.org/I121345201","display_name":"Instituto de Engenharia de Sistemas e Computadores Investiga\u00e7\u00e3o e Desenvolvimento","ror":"https://ror.org/04mqy3p58","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I121345201","https://openalex.org/I4210125590"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"P. T. Monteiro","raw_affiliation_strings":["INESC-ID, Knowledge Discovery and Bioinformatics Group, R. Alves Redol, 9, 1000-029 Lisbon, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INESC-ID, Knowledge Discovery and Bioinformatics Group, R. Alves Redol, 9, 1000-029 Lisbon, Portugal","institution_ids":["https://openalex.org/I121345201"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063271167","display_name":"Nuno D. Mendes","orcid":"https://orcid.org/0000-0001-8774-9759"},"institutions":[{"id":"https://openalex.org/I121345201","display_name":"Instituto de Engenharia de Sistemas e Computadores Investiga\u00e7\u00e3o e Desenvolvimento","ror":"https://ror.org/04mqy3p58","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I121345201","https://openalex.org/I4210125590"]},{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]},{"id":"https://openalex.org/I4210125522","display_name":"Instituto de Ci\u00eancia e Tecnologia de Pol\u00edmeros","ror":"https://ror.org/02z3xdq04","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I4210125522"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"N. D. Mendes","raw_affiliation_strings":["INESC-ID, Knowledge Discovery and Bioinformatics Group, R. Alves Redol, 9, 1000-029 Lisbon,","Instituto Superior Te cnico, Av. Rovisco Pais, 1049-001 Lisbon, Portugal","University of Lisbon, Lisbon, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INESC-ID, Knowledge Discovery and Bioinformatics Group, R. Alves Redol, 9, 1000-029 Lisbon,","institution_ids":["https://openalex.org/I121345201"]},{"raw_affiliation_string":"Instituto Superior Te cnico, Av. Rovisco Pais, 1049-001 Lisbon, Portugal","institution_ids":["https://openalex.org/I4210125522"]},{"raw_affiliation_string":"University of Lisbon, Lisbon, Portugal","institution_ids":["https://openalex.org/I141596103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046370719","display_name":"Miguel C. Teixeira","orcid":"https://orcid.org/0000-0002-5676-6174"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]},{"id":"https://openalex.org/I4210125522","display_name":"Instituto de Ci\u00eancia e Tecnologia de Pol\u00edmeros","ror":"https://ror.org/02z3xdq04","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I4210125522"]},{"id":"https://openalex.org/I4210167387","display_name":"Institute for Biotechnology and Bioengineering","ror":"https://ror.org/05ws8g470","country_code":"PT","type":"facility","lineage":["https://openalex.org/I4210167387"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"M. C. Teixeira","raw_affiliation_strings":["IBB-Institute for Biotechnology and BioEngineering, Centre for Biological and Chemical Engineering, Biological Sciences Research Group, Av. Rovisco Pais, 1049-001 Lisbon and","Instituto Superior Te cnico, Av. Rovisco Pais, 1049-001 Lisbon, Portugal","University of Lisbon, Lisbon, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBB-Institute for Biotechnology and BioEngineering, Centre for Biological and Chemical Engineering, Biological Sciences Research Group, Av. Rovisco Pais, 1049-001 Lisbon and","institution_ids":["https://openalex.org/I4210167387"]},{"raw_affiliation_string":"Instituto Superior Te cnico, Av. Rovisco Pais, 1049-001 Lisbon, Portugal","institution_ids":["https://openalex.org/I4210125522"]},{"raw_affiliation_string":"University of Lisbon, Lisbon, Portugal","institution_ids":["https://openalex.org/I141596103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017385221","display_name":"Sofia d'Orey","orcid":null},"institutions":[{"id":"https://openalex.org/I121345201","display_name":"Instituto de Engenharia de Sistemas e Computadores Investiga\u00e7\u00e3o e Desenvolvimento","ror":"https://ror.org/04mqy3p58","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I121345201","https://openalex.org/I4210125590"]},{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"S. d'Orey","raw_affiliation_strings":["INESC-ID, Knowledge Discovery and Bioinformatics Group, R. Alves Redol, 9, 1000-029 Lisbon,","University of Lisbon, Lisbon, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INESC-ID, Knowledge Discovery and Bioinformatics Group, R. Alves Redol, 9, 1000-029 Lisbon,","institution_ids":["https://openalex.org/I121345201"]},{"raw_affiliation_string":"University of Lisbon, Lisbon, Portugal","institution_ids":["https://openalex.org/I141596103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056030772","display_name":"Sandra Tenreiro","orcid":"https://orcid.org/0000-0001-7272-5842"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]},{"id":"https://openalex.org/I4210125522","display_name":"Instituto de Ci\u00eancia e Tecnologia de Pol\u00edmeros","ror":"https://ror.org/02z3xdq04","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I4210125522"]},{"id":"https://openalex.org/I4210167387","display_name":"Institute for Biotechnology and Bioengineering","ror":"https://ror.org/05ws8g470","country_code":"PT","type":"facility","lineage":["https://openalex.org/I4210167387"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"S. Tenreiro","raw_affiliation_strings":["IBB-Institute for Biotechnology and BioEngineering, Centre for Biological and Chemical Engineering, Biological Sciences Research Group, Av. Rovisco Pais, 1049-001 Lisbon and","Instituto Superior Te cnico, Av. Rovisco Pais, 1049-001 Lisbon, Portugal","University of Lisbon, Lisbon, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBB-Institute for Biotechnology and BioEngineering, Centre for Biological and Chemical Engineering, Biological Sciences Research Group, Av. Rovisco Pais, 1049-001 Lisbon and","institution_ids":["https://openalex.org/I4210167387"]},{"raw_affiliation_string":"Instituto Superior Te cnico, Av. Rovisco Pais, 1049-001 Lisbon, Portugal","institution_ids":["https://openalex.org/I4210125522"]},{"raw_affiliation_string":"University of Lisbon, Lisbon, Portugal","institution_ids":["https://openalex.org/I141596103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083137468","display_name":"Nuno P. Mira","orcid":"https://orcid.org/0000-0001-7556-0385"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]},{"id":"https://openalex.org/I4210125522","display_name":"Instituto de Ci\u00eancia e Tecnologia de Pol\u00edmeros","ror":"https://ror.org/02z3xdq04","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I4210125522"]},{"id":"https://openalex.org/I4210167387","display_name":"Institute for Biotechnology and Bioengineering","ror":"https://ror.org/05ws8g470","country_code":"PT","type":"facility","lineage":["https://openalex.org/I4210167387"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"N. P. Mira","raw_affiliation_strings":["IBB-Institute for Biotechnology and BioEngineering, Centre for Biological and Chemical Engineering, Biological Sciences Research Group, Av. Rovisco Pais, 1049-001 Lisbon and","Instituto Superior Te cnico, Av. Rovisco Pais, 1049-001 Lisbon, Portugal","University of Lisbon, Lisbon, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBB-Institute for Biotechnology and BioEngineering, Centre for Biological and Chemical Engineering, Biological Sciences Research Group, Av. Rovisco Pais, 1049-001 Lisbon and","institution_ids":["https://openalex.org/I4210167387"]},{"raw_affiliation_string":"Instituto Superior Te cnico, Av. Rovisco Pais, 1049-001 Lisbon, Portugal","institution_ids":["https://openalex.org/I4210125522"]},{"raw_affiliation_string":"University of Lisbon, Lisbon, Portugal","institution_ids":["https://openalex.org/I141596103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037913844","display_name":"Helio Pais","orcid":"https://orcid.org/0000-0003-2352-298X"},"institutions":[{"id":"https://openalex.org/I121345201","display_name":"Instituto de Engenharia de Sistemas e Computadores Investiga\u00e7\u00e3o e Desenvolvimento","ror":"https://ror.org/04mqy3p58","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I121345201","https://openalex.org/I4210125590"]},{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"H. Pais","raw_affiliation_strings":["INESC-ID, Knowledge Discovery and Bioinformatics Group, R. Alves Redol, 9, 1000-029 Lisbon,","University of Lisbon, Lisbon, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INESC-ID, Knowledge Discovery and Bioinformatics Group, R. Alves Redol, 9, 1000-029 Lisbon,","institution_ids":["https://openalex.org/I121345201"]},{"raw_affiliation_string":"University of Lisbon, Lisbon, Portugal","institution_ids":["https://openalex.org/I141596103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110540557","display_name":"Alexandre P. Francisco","orcid":"https://orcid.org/0000-0003-4852-1641"},"institutions":[{"id":"https://openalex.org/I121345201","display_name":"Instituto de Engenharia de Sistemas e Computadores Investiga\u00e7\u00e3o e Desenvolvimento","ror":"https://ror.org/04mqy3p58","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I121345201","https://openalex.org/I4210125590"]},{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]},{"id":"https://openalex.org/I4210125522","display_name":"Instituto de Ci\u00eancia e Tecnologia de Pol\u00edmeros","ror":"https://ror.org/02z3xdq04","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I4210125522"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"A. P. Francisco","raw_affiliation_strings":["INESC-ID, Knowledge Discovery and Bioinformatics Group, R. Alves Redol, 9, 1000-029 Lisbon,","Instituto Superior Te cnico, Av. Rovisco Pais, 1049-001 Lisbon, Portugal","University of Lisbon, Lisbon, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INESC-ID, Knowledge Discovery and Bioinformatics Group, R. Alves Redol, 9, 1000-029 Lisbon,","institution_ids":["https://openalex.org/I121345201"]},{"raw_affiliation_string":"Instituto Superior Te cnico, Av. Rovisco Pais, 1049-001 Lisbon, Portugal","institution_ids":["https://openalex.org/I4210125522"]},{"raw_affiliation_string":"University of Lisbon, Lisbon, Portugal","institution_ids":["https://openalex.org/I141596103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010513234","display_name":"Alexandra M. Carvalho","orcid":"https://orcid.org/0000-0001-6607-7711"},"institutions":[{"id":"https://openalex.org/I121345201","display_name":"Instituto de Engenharia de Sistemas e Computadores Investiga\u00e7\u00e3o e Desenvolvimento","ror":"https://ror.org/04mqy3p58","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I121345201","https://openalex.org/I4210125590"]},{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]},{"id":"https://openalex.org/I4210125522","display_name":"Instituto de Ci\u00eancia e Tecnologia de Pol\u00edmeros","ror":"https://ror.org/02z3xdq04","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I4210125522"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"A. M. Carvalho","raw_affiliation_strings":["INESC-ID, Knowledge Discovery and Bioinformatics Group, R. Alves Redol, 9, 1000-029 Lisbon,","Instituto Superior Te cnico, Av. Rovisco Pais, 1049-001 Lisbon, Portugal","University of Lisbon, Lisbon, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INESC-ID, Knowledge Discovery and Bioinformatics Group, R. Alves Redol, 9, 1000-029 Lisbon,","institution_ids":["https://openalex.org/I121345201"]},{"raw_affiliation_string":"Instituto Superior Te cnico, Av. Rovisco Pais, 1049-001 Lisbon, Portugal","institution_ids":["https://openalex.org/I4210125522"]},{"raw_affiliation_string":"University of Lisbon, Lisbon, Portugal","institution_ids":["https://openalex.org/I141596103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080610552","display_name":"Artur B. Louren\u00e7o","orcid":"https://orcid.org/0000-0002-9379-9231"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"A. B. Lourenco","raw_affiliation_strings":["University of Lisbon, Lisbon, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Lisbon, Lisbon, Portugal","institution_ids":["https://openalex.org/I141596103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011114213","display_name":"Isabel S\u00e1\u2010Correia","orcid":"https://orcid.org/0000-0003-2208-5183"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"I. Sa-Correia","raw_affiliation_strings":["University of Lisbon, Lisbon, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Lisbon, Lisbon, Portugal","institution_ids":["https://openalex.org/I141596103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001327675","display_name":"Arlindo L. Oliveira","orcid":"https://orcid.org/0000-0001-8638-5594"},"institutions":[{"id":"https://openalex.org/I121345201","display_name":"Instituto de Engenharia de Sistemas e Computadores Investiga\u00e7\u00e3o e Desenvolvimento","ror":"https://ror.org/04mqy3p58","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I121345201","https://openalex.org/I4210125590"]},{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]},{"id":"https://openalex.org/I4210125522","display_name":"Instituto de Ci\u00eancia e Tecnologia de Pol\u00edmeros","ror":"https://ror.org/02z3xdq04","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I4210125522"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"A. L. Oliveira","raw_affiliation_strings":["INESC-ID, Knowledge Discovery and Bioinformatics Group, R. Alves Redol, 9, 1000-029 Lisbon,","Instituto Superior Te cnico, Av. Rovisco Pais, 1049-001 Lisbon, Portugal","University of Lisbon, Lisbon, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INESC-ID, Knowledge Discovery and Bioinformatics Group, R. Alves Redol, 9, 1000-029 Lisbon,","institution_ids":["https://openalex.org/I121345201"]},{"raw_affiliation_string":"Instituto Superior Te cnico, Av. Rovisco Pais, 1049-001 Lisbon, Portugal","institution_ids":["https://openalex.org/I4210125522"]},{"raw_affiliation_string":"University of Lisbon, Lisbon, Portugal","institution_ids":["https://openalex.org/I141596103"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083766796","display_name":"Ana T. Freitas","orcid":"https://orcid.org/0000-0002-2997-5990"},"institutions":[{"id":"https://openalex.org/I121345201","display_name":"Instituto de Engenharia de Sistemas e Computadores Investiga\u00e7\u00e3o e Desenvolvimento","ror":"https://ror.org/04mqy3p58","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I121345201","https://openalex.org/I4210125590"]},{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]},{"id":"https://openalex.org/I4210125522","display_name":"Instituto de Ci\u00eancia e Tecnologia de Pol\u00edmeros","ror":"https://ror.org/02z3xdq04","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I4210125522"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"A. T. Freitas","raw_affiliation_strings":["INESC-ID, Knowledge Discovery and Bioinformatics Group, R. Alves Redol, 9, 1000-029 Lisbon,","Instituto Superior Te cnico, Av. Rovisco Pais, 1049-001 Lisbon, Portugal","University of Lisbon, Lisbon, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INESC-ID, Knowledge Discovery and Bioinformatics Group, R. Alves Redol, 9, 1000-029 Lisbon,","institution_ids":["https://openalex.org/I121345201"]},{"raw_affiliation_string":"Instituto Superior Te cnico, Av. Rovisco Pais, 1049-001 Lisbon, Portugal","institution_ids":["https://openalex.org/I4210125522"]},{"raw_affiliation_string":"University of Lisbon, Lisbon, Portugal","institution_ids":["https://openalex.org/I141596103"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":13,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":6.0567,"has_fulltext":true,"cited_by_count":186,"citation_normalized_percentile":{"value":0.97180887,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"36","issue":"Database","first_page":"D132","last_page":"D136"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8355328440666199},{"id":"https://openalex.org/keywords/saccharomyces-cerevisiae","display_name":"Saccharomyces cerevisiae","score":0.7761616706848145},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6232330799102783},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6011509299278259},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.5976704955101013},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.573760986328125},{"id":"https://openalex.org/keywords/transcriptional-regulation","display_name":"Transcriptional regulation","score":0.5044790506362915},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.4739891588687897},{"id":"https://openalex.org/keywords/dna-binding-site","display_name":"DNA binding site","score":0.4502793550491333},{"id":"https://openalex.org/keywords/transcription","display_name":"Transcription (linguistics)","score":0.4463646113872528},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.4349944591522217},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.4128051996231079},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.2588736116886139}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8355328440666199},{"id":"https://openalex.org/C2777576037","wikidata":"https://www.wikidata.org/wiki/Q719725","display_name":"Saccharomyces cerevisiae","level":3,"score":0.7761616706848145},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6232330799102783},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6011509299278259},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.5976704955101013},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.573760986328125},{"id":"https://openalex.org/C27153228","wikidata":"https://www.wikidata.org/wiki/Q3787274","display_name":"Transcriptional regulation","level":4,"score":0.5044790506362915},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.4739891588687897},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.4502793550491333},{"id":"https://openalex.org/C179926584","wikidata":"https://www.wikidata.org/wiki/Q207714","display_name":"Transcription (linguistics)","level":2,"score":0.4463646113872528},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.4349944591522217},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.4128051996231079},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.2588736116886139},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015966","descriptor_name":"Gene Expression Regulation, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015966","descriptor_name":"Gene Expression Regulation, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015966","descriptor_name":"Gene Expression Regulation, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkm976","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm976","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_1/D132/7636267/gkm976.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:18032429","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18032429","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2238916","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2238916","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkm976","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm976","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_1/D132/7636267/gkm976.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1970679073.pdf","grobid_xml":"https://content.openalex.org/works/W1970679073.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1604959358","https://openalex.org/W1990987722","https://openalex.org/W2025778665","https://openalex.org/W2065635150","https://openalex.org/W2077953882","https://openalex.org/W2080498142","https://openalex.org/W2087064593","https://openalex.org/W2096210973","https://openalex.org/W2097396311","https://openalex.org/W2098045561","https://openalex.org/W2099189600","https://openalex.org/W2103017472","https://openalex.org/W2119791629","https://openalex.org/W2125954247","https://openalex.org/W2126602684","https://openalex.org/W2140115103","https://openalex.org/W2141519063","https://openalex.org/W2153533521","https://openalex.org/W2153624566","https://openalex.org/W2158107150"],"related_works":["https://openalex.org/W2581702729","https://openalex.org/W2010571965","https://openalex.org/W2912720016","https://openalex.org/W2002709996","https://openalex.org/W3128451840","https://openalex.org/W4387092964","https://openalex.org/W2103471012","https://openalex.org/W2966064480","https://openalex.org/W2380236774","https://openalex.org/W2620422757"],"abstract_inverted_index":{"The":[0,118,173],"Yeast":[1],"search":[2],"for":[3,53,162],"transcriptional":[4,159],"regulators":[5],"and":[6,43,46,132,170],"consensus":[7],"tracking":[8],"(YEASTRACT)":[9],"information":[10],"system":[11,191],"(www.yeastract.com)":[12],"was":[13],"developed":[14],"to":[15,62,106,154,192],"support":[16],"the":[17,64,67,79,83,112,137,190,194,198],"analysis":[18,84],"of":[19,66,74,85,99,115,158,176,179,196],"transcription":[20,139],"regulatory":[21,37,160,166],"associations":[22,38,167],"in":[23,28,77,111,124,144,147,183],"Saccharomyces":[24],"cerevisiae.":[25],"Last":[26],"updated":[27],"September":[29],"2007,":[30],"this":[31,91,148],"database":[32],"contains":[33],"over":[34],"30":[35],"990":[36],"between":[39,168],"Transcription":[40],"Factors":[41],"(TFs)":[42],"target":[44,171],"genes":[45],"includes":[47,95],"284":[48],"specific":[49],"DNA":[50],"binding":[51,141],"sites":[52,142],"108":[54],"characterized":[55],"TFs.":[56],"Computational":[57],"tools":[58,101],"are":[59,121,133,187],"also":[60],"provided":[61],"facilitate":[63],"exploitation":[65],"gathered":[68],"data":[69],"when":[70],"solving":[71],"a":[72,97,128],"number":[73],"biological":[75],"questions,":[76],"particular":[78],"ones":[80],"that":[81,102],"involve":[82],"global":[86],"gene":[87],"expression":[88],"results.":[89],"In":[90],"new":[92,149],"release,":[93,150],"YEASTRACT":[94],"DISCOVERER,":[96],"set":[98],"computational":[100],"can":[103],"be":[104],"used":[105],"identify":[107],"complex":[108],"motifs":[109,119],"over-represented":[110],"promoter":[113],"regions":[114],"co-regulated":[116],"genes.":[117,172],"identified":[120],"then":[122],"clustered":[123],"families,":[125],"represented":[126],"by":[127],"position":[129],"weight":[130],"matrix":[131],"automatically":[134],"compared":[135],"with":[136],"known":[138],"factor":[140],"described":[143],"YEASTRACT.":[145],"Additionally,":[146],"it":[151],"is":[152,181],"possible":[153],"generate":[155],"graphic":[156],"depictions":[157],"networks":[161,178],"documented":[163],"or":[164],"potential":[165],"TFs":[169],"visual":[174],"display":[175],"these":[177],"interactions":[180],"instrumental":[182],"functional":[184],"studies.":[185],"Tutorials":[186],"available":[188,199],"on":[189],"exemplify":[193],"use":[195],"all":[197],"tools.":[200]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":26},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":14},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":17},{"year":2013,"cited_by_count":11},{"year":2012,"cited_by_count":22}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}