{"id":"https://openalex.org/W2144313410","doi":"https://doi.org/10.1093/nar/gkm972","title":"PlantTribes: a gene and gene family resource for comparative genomics in plants","display_name":"PlantTribes: a gene and gene family resource for comparative genomics in plants","publication_year":2007,"publication_date":"2007-12-11","ids":{"openalex":"https://openalex.org/W2144313410","doi":"https://doi.org/10.1093/nar/gkm972","mag":"2144313410","pmid":"https://pubmed.ncbi.nlm.nih.gov/18073194"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkm972","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm972","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_1/D970/7636103/gkm972.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/36/suppl_1/D970/7636103/gkm972.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075652070","display_name":"P. Kerr Wall","orcid":null},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"P. K. Wall","raw_affiliation_strings":["Department of Biology, Institute of Molecular Evolutionary Genetics, and The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, Institute of Molecular Evolutionary Genetics, and The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055252653","display_name":"Jim Leebens\u2010Mack","orcid":"https://orcid.org/0000-0003-4811-2231"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]},{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"J. Leebens-Mack","raw_affiliation_strings":["Department of Biology, Institute of Molecular Evolutionary Genetics, and The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802, USA, 2 Department of Plant Biology, University of Georgia, Athens, GA 30602, USA, 3 Nees Institute for the Biodiversity of Plants, University of Bonn, Meckenheimer Allee 170, 53115 Bonn, Germany, 4 Molecular Evolution and Bioinformatics Group, NERC Centre for Ecology and Hydrology, Mansfield Road, Oxford, OX1 3SR, UK and 5 Department of Statistics and The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802, USA","Pennsylvania State University, State College, United States"],"affiliations":[{"raw_affiliation_string":"Department of Biology, Institute of Molecular Evolutionary Genetics, and The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802, USA, 2 Department of Plant Biology, University of Georgia, Athens, GA 30602, USA, 3 Nees Institute for the Biodiversity of Plants, University of Bonn, Meckenheimer Allee 170, 53115 Bonn, Germany, 4 Molecular Evolution and Bioinformatics Group, NERC Centre for Ecology and Hydrology, Mansfield Road, Oxford, OX1 3SR, UK and 5 Department of Statistics and The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802, USA","institution_ids":["https://openalex.org/I165733156","https://openalex.org/I135140700","https://openalex.org/I130769515"]},{"raw_affiliation_string":"Pennsylvania State University, State College, United States","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053484497","display_name":"Kai M\u00fcller","orcid":"https://orcid.org/0000-0002-0962-3824"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]},{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"K. F. Muller","raw_affiliation_strings":["Department of Biology, Institute of Molecular Evolutionary Genetics, and The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802, USA, 2 Department of Plant Biology, University of Georgia, Athens, GA 30602, USA, 3 Nees Institute for the Biodiversity of Plants, University of Bonn, Meckenheimer Allee 170, 53115 Bonn, Germany, 4 Molecular Evolution and Bioinformatics Group, NERC Centre for Ecology and Hydrology, Mansfield Road, Oxford, OX1 3SR, UK and 5 Department of Statistics and The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802, USA","Pennsylvania State University, State College, United States"],"affiliations":[{"raw_affiliation_string":"Department of Biology, Institute of Molecular Evolutionary Genetics, and The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802, USA, 2 Department of Plant Biology, University of Georgia, Athens, GA 30602, USA, 3 Nees Institute for the Biodiversity of Plants, University of Bonn, Meckenheimer Allee 170, 53115 Bonn, Germany, 4 Molecular Evolution and Bioinformatics Group, NERC Centre for Ecology and Hydrology, Mansfield Road, Oxford, OX1 3SR, UK and 5 Department of Statistics and The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802, USA","institution_ids":["https://openalex.org/I165733156","https://openalex.org/I135140700","https://openalex.org/I130769515"]},{"raw_affiliation_string":"Pennsylvania State University, State College, United States","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068248399","display_name":"Dawn Field","orcid":null},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]},{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]},{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"D. Field","raw_affiliation_strings":["Department of Biology, Institute of Molecular Evolutionary Genetics, and The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802, USA, 2 Department of Plant Biology, University of Georgia, Athens, GA 30602, USA, 3 Nees Institute for the Biodiversity of Plants, University of Bonn, Meckenheimer Allee 170, 53115 Bonn, Germany, 4 Molecular Evolution and Bioinformatics Group, NERC Centre for Ecology and Hydrology, Mansfield Road, Oxford, OX1 3SR, UK and 5 Department of Statistics and The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802, USA","Pennsylvania State University, State College, United States"],"affiliations":[{"raw_affiliation_string":"Department of Biology, Institute of Molecular Evolutionary Genetics, and The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802, USA, 2 Department of Plant Biology, University of Georgia, Athens, GA 30602, USA, 3 Nees Institute for the Biodiversity of Plants, University of Bonn, Meckenheimer Allee 170, 53115 Bonn, Germany, 4 Molecular Evolution and Bioinformatics Group, NERC Centre for Ecology and Hydrology, Mansfield Road, Oxford, OX1 3SR, UK and 5 Department of Statistics and The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802, USA","institution_ids":["https://openalex.org/I165733156","https://openalex.org/I135140700","https://openalex.org/I130769515"]},{"raw_affiliation_string":"Pennsylvania State University, State College, United States","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043659174","display_name":"Naomi Altman","orcid":"https://orcid.org/0000-0002-3970-2152"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]},{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"N. S. Altman","raw_affiliation_strings":["Department of Biology, Institute of Molecular Evolutionary Genetics, and The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802, USA, 2 Department of Plant Biology, University of Georgia, Athens, GA 30602, USA, 3 Nees Institute for the Biodiversity of Plants, University of Bonn, Meckenheimer Allee 170, 53115 Bonn, Germany, 4 Molecular Evolution and Bioinformatics Group, NERC Centre for Ecology and Hydrology, Mansfield Road, Oxford, OX1 3SR, UK and 5 Department of Statistics and The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802, USA","Pennsylvania State University, State College, United States"],"affiliations":[{"raw_affiliation_string":"Department of Biology, Institute of Molecular Evolutionary Genetics, and The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802, USA, 2 Department of Plant Biology, University of Georgia, Athens, GA 30602, USA, 3 Nees Institute for the Biodiversity of Plants, University of Bonn, Meckenheimer Allee 170, 53115 Bonn, Germany, 4 Molecular Evolution and Bioinformatics Group, NERC Centre for Ecology and Hydrology, Mansfield Road, Oxford, OX1 3SR, UK and 5 Department of Statistics and The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802, USA","institution_ids":["https://openalex.org/I165733156","https://openalex.org/I135140700","https://openalex.org/I130769515"]},{"raw_affiliation_string":"Pennsylvania State University, State College, United States","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067498631","display_name":"Claude W. dePamphilis","orcid":"https://orcid.org/0000-0001-8465-1342"},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]},{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"C. W. dePamphilis","raw_affiliation_strings":["Department of Biology, Institute of Molecular Evolutionary Genetics, and The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802, USA, 2 Department of Plant Biology, University of Georgia, Athens, GA 30602, USA, 3 Nees Institute for the Biodiversity of Plants, University of Bonn, Meckenheimer Allee 170, 53115 Bonn, Germany, 4 Molecular Evolution and Bioinformatics Group, NERC Centre for Ecology and Hydrology, Mansfield Road, Oxford, OX1 3SR, UK and 5 Department of Statistics and The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802, USA","Pennsylvania State University, State College, United States"],"affiliations":[{"raw_affiliation_string":"Department of Biology, Institute of Molecular Evolutionary Genetics, and The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802, USA, 2 Department of Plant Biology, University of Georgia, Athens, GA 30602, USA, 3 Nees Institute for the Biodiversity of Plants, University of Bonn, Meckenheimer Allee 170, 53115 Bonn, Germany, 4 Molecular Evolution and Bioinformatics Group, NERC Centre for Ecology and Hydrology, Mansfield Road, Oxford, OX1 3SR, UK and 5 Department of Statistics and The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802, USA","institution_ids":["https://openalex.org/I165733156","https://openalex.org/I135140700","https://openalex.org/I130769515"]},{"raw_affiliation_string":"Pennsylvania State University, State College, United States","institution_ids":["https://openalex.org/I130769515"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5075652070"],"corresponding_institution_ids":["https://openalex.org/I130769515"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":3.2274,"has_fulltext":true,"cited_by_count":101,"citation_normalized_percentile":{"value":0.92589795,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"36","issue":"Database","first_page":"D970","last_page":"D976"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9847000241279602,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12991","display_name":"Phytase and its Applications","score":0.984499990940094,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8666534423828125},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6521864533424377},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.6018184423446655},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5606644749641418},{"id":"https://openalex.org/keywords/medicago-truncatula","display_name":"Medicago truncatula","score":0.5378820896148682},{"id":"https://openalex.org/keywords/gene-family","display_name":"Gene family","score":0.5288919806480408},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4799644947052002},{"id":"https://openalex.org/keywords/populus-trichocarpa","display_name":"Populus trichocarpa","score":0.47593024373054504},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.47341471910476685},{"id":"https://openalex.org/keywords/arabidopsis-thaliana","display_name":"Arabidopsis thaliana","score":0.4475895166397095},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4273976683616638},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"Comparative genomics","score":0.41811859607696533}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8666534423828125},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6521864533424377},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.6018184423446655},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5606644749641418},{"id":"https://openalex.org/C2778339097","wikidata":"https://www.wikidata.org/wiki/Q136894","display_name":"Medicago truncatula","level":4,"score":0.5378820896148682},{"id":"https://openalex.org/C5911399","wikidata":"https://www.wikidata.org/wiki/Q2278983","display_name":"Gene family","level":4,"score":0.5288919806480408},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4799644947052002},{"id":"https://openalex.org/C2780250286","wikidata":"https://www.wikidata.org/wiki/Q149382","display_name":"Populus trichocarpa","level":4,"score":0.47593024373054504},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.47341471910476685},{"id":"https://openalex.org/C2775988993","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Arabidopsis thaliana","level":4,"score":0.4475895166397095},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4273976683616638},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.41811859607696533},{"id":"https://openalex.org/C43144210","wikidata":"https://www.wikidata.org/wiki/Q121610","display_name":"Symbiosis","level":3,"score":0.0},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.0},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkm972","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm972","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_1/D970/7636103/gkm972.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:18073194","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18073194","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.490.8092","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.490.8092","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/36/suppl_1/D970.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:2238917","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2238917","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkm972","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm972","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_1/D970/7636103/gkm972.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6700000166893005,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G57586662","display_name":null,"funder_award_id":"0501890","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7024821947","display_name":"The Ancestral Angiosperm Genome Project","funder_award_id":"0638595","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8320529432","display_name":"The Floral Genome Project","funder_award_id":"0115684","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8565392586","display_name":null,"funder_award_id":"638595","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321636","display_name":"Deutsche Telekom Stiftung","ror":"https://ror.org/0550zmx90"},{"id":"https://openalex.org/F4320337400","display_name":"Division of Environmental Biology","ror":"https://ror.org/03g87he71"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2144313410.pdf","grobid_xml":"https://content.openalex.org/works/W2144313410.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W29790389","https://openalex.org/W1598933278","https://openalex.org/W1991882465","https://openalex.org/W2026648922","https://openalex.org/W2031985421","https://openalex.org/W2055043387","https://openalex.org/W2058992096","https://openalex.org/W2059160066","https://openalex.org/W2065579918","https://openalex.org/W2079223884","https://openalex.org/W2085660114","https://openalex.org/W2096079071","https://openalex.org/W2101829413","https://openalex.org/W2103017472","https://openalex.org/W2103088017","https://openalex.org/W2104262633","https://openalex.org/W2106236530","https://openalex.org/W2117752525","https://openalex.org/W2123822154","https://openalex.org/W2124166542","https://openalex.org/W2124922304","https://openalex.org/W2125346198","https://openalex.org/W2126763909","https://openalex.org/W2128667600","https://openalex.org/W2132926880","https://openalex.org/W2137983440","https://openalex.org/W2150284622","https://openalex.org/W2152517415","https://openalex.org/W2160420838","https://openalex.org/W2164789250","https://openalex.org/W2166557397","https://openalex.org/W2169335408","https://openalex.org/W2171154676","https://openalex.org/W3217097258","https://openalex.org/W4236236547"],"related_works":["https://openalex.org/W2073158484","https://openalex.org/W4307275232","https://openalex.org/W1562691154","https://openalex.org/W2560679863","https://openalex.org/W3011012992","https://openalex.org/W4378695851","https://openalex.org/W2588700793","https://openalex.org/W2410697326","https://openalex.org/W3015781460","https://openalex.org/W3088690556"],"abstract_inverted_index":{"The":[0,147],"PlantTribes":[1],"database":[2,9,92],"(http://fgp.huck.psu.edu/tribe.html)":[3],"is":[4,97],"a":[5,134,159,181],"plant":[6,18,154,172],"gene":[7,64,125,145],"family":[8],"based":[10],"on":[11],"the":[12,33,100,188,195],"inferred":[13],"proteomes":[14],"of":[15,57,93,107,137,150],"five":[16],"sequenced":[17],"species:":[19],"Arabidopsis":[20],"thaliana,":[21],"Carica":[22],"papaya,":[23],"Medicago":[24],"truncatula,":[25],"Oryza":[26],"sativa":[27],"and":[28,44,74,83,86,110,118,127,176,197],"Populus":[29],"trichocarpa.":[30],"We":[31],"used":[32,157],"graph-based":[34],"clustering":[35,70],"algorithm":[36],"MCL":[37,138],"[Van":[38],"Dongen":[39],"(Technical":[40],"Report":[41],"INS-R0010":[42],"2000)":[43],"Enright":[45],"et":[46],"al.":[47],"(Nucleic":[48],"Acids":[49],"Res.":[50],"2002;":[51],"30:":[52],"1575-1584)]":[53],"to":[54,99,123,186,190,198],"classify":[55],"all":[56,77],"these":[58],"species'":[59],"protein-coding":[60],"genes":[61,109],"into":[62],"putative":[63],"families,":[65],"called":[66],"tribes,":[67,78],"using":[68],"three":[69],"stringencies":[71],"(low,":[72],"medium":[73],"high).":[75],"For":[76],"we":[79],"have":[80],"generated":[81],"protein":[82],"DNA":[84],"alignments":[85],"maximum-likelihood":[87],"phylogenetic":[88],"trees.":[89],"A":[90],"parallel":[91],"microarray":[94],"experimental":[95],"results":[96,200],"linked":[98],"genes,":[101],"which":[102],"lets":[103],"researchers":[104],"identify":[105],"groups":[106],"related":[108,122,144],"their":[111],"expression":[112],"patterns.":[113],"Unified":[114],"nomenclatures":[115],"were":[116],"developed,":[117],"tribes":[119],"can":[120],"be":[121],"traditional":[124],"families":[126],"conserved":[128],"domain":[129],"identifiers.":[130],"SuperTribes,":[131],"constructed":[132],"through":[133,180],"second":[135],"iteration":[136],"clustering,":[139],"connect":[140],"distant,":[141],"but":[142],"potentially":[143],"clusters.":[146],"global":[148],"classification":[149],"nearly":[151],"200":[152,171],"000":[153],"proteins":[155],"was":[156],"as":[158],"scaffold":[160],"for":[161,201],"sorting":[162],"approximately":[163],"4":[164],"million":[165],"additional":[166],"cDNA":[167],"sequences":[168,193],"from":[169],"over":[170],"species.":[173],"All":[174],"data":[175],"analyses":[177],"are":[178],"accessible":[179],"flexible":[182],"interface":[183],"allowing":[184],"users":[185],"explore":[187],"classification,":[189,196],"place":[191],"query":[192],"within":[194],"download":[199],"further":[202],"study.":[203]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":10}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}