{"id":"https://openalex.org/W2065820441","doi":"https://doi.org/10.1093/nar/gkm963","title":"SIMAP structuring the network of protein similarities","display_name":"SIMAP structuring the network of protein similarities","publication_year":2007,"publication_date":"2007-11-24","ids":{"openalex":"https://openalex.org/W2065820441","doi":"https://doi.org/10.1093/nar/gkm963","mag":"2065820441","pmid":"https://pubmed.ncbi.nlm.nih.gov/18037617"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkm963","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm963","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_1/D289/7635728/gkm963.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/36/suppl_1/D289/7635728/gkm963.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051653794","display_name":"Thomas Rattei","orcid":"https://orcid.org/0000-0002-0592-7791"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"T. Rattei","raw_affiliation_strings":["Chair of Genome Oriented Bioinformatics, Center of Life and Food Science, Technische Universit\u00e4t M\u00fcnchen, 85350 Freising-Weihenstephan, Germany","Technical University of Munich, Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Chair of Genome Oriented Bioinformatics, Center of Life and Food Science, Technische Universit\u00e4t M\u00fcnchen, 85350 Freising-Weihenstephan, Germany","institution_ids":[]},{"raw_affiliation_string":"Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016531886","display_name":"Patrick Tischler","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"P. Tischler","raw_affiliation_strings":["Technical University of Munich, Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016382034","display_name":"Roland Arnold","orcid":"https://orcid.org/0000-0002-7496-7578"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"R. Arnold","raw_affiliation_strings":["Technical University of Munich, Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029411149","display_name":"Florian Hamberger","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"F. Hamberger","raw_affiliation_strings":["Technical University of Munich, Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109204330","display_name":"J. J. Krebs","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"J. Krebs","raw_affiliation_strings":["Technical University of Munich, Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023342647","display_name":"Jan Krumsiek","orcid":"https://orcid.org/0000-0003-4734-3791"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"J. Krumsiek","raw_affiliation_strings":["Technical University of Munich, Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036121340","display_name":"Benedikt Wachinger","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"B. Wachinger","raw_affiliation_strings":["Technical University of Munich, Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059576830","display_name":"V. Stumpflen","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"V. Stumpflen","raw_affiliation_strings":["Technical University of Munich, Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086890458","display_name":"Hans\u2010Werner Mewes","orcid":"https://orcid.org/0000-0002-9713-6398"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"W. Mewes","raw_affiliation_strings":["Technical University of Munich, Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5051653794"],"corresponding_institution_ids":["https://openalex.org/I62916508"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.8107,"has_fulltext":false,"cited_by_count":29,"citation_normalized_percentile":{"value":0.90783014,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"36","issue":"Database","first_page":"D289","last_page":"D292"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7228962182998657},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5817582011222839},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5679962635040283},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.5652689933776855},{"id":"https://openalex.org/keywords/protein-methods","display_name":"Protein methods","score":0.5037276148796082},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.48226362466812134},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.47258293628692627},{"id":"https://openalex.org/keywords/protein-domain","display_name":"Protein domain","score":0.4484165906906128},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.4208933711051941},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.4184502065181732},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4131929278373718},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3605312705039978},{"id":"https://openalex.org/keywords/sequence-analysis","display_name":"Sequence analysis","score":0.3589295744895935},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.33387133479118347},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.3260369300842285},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3236583471298218},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3027821183204651},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.26693597435951233},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15425676107406616},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.14331898093223572}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7228962182998657},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5817582011222839},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5679962635040283},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.5652689933776855},{"id":"https://openalex.org/C111364199","wikidata":"https://www.wikidata.org/wiki/Q2915896","display_name":"Protein methods","level":4,"score":0.5037276148796082},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.48226362466812134},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.47258293628692627},{"id":"https://openalex.org/C144292202","wikidata":"https://www.wikidata.org/wiki/Q898273","display_name":"Protein domain","level":3,"score":0.4484165906906128},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.4208933711051941},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.4184502065181732},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4131929278373718},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3605312705039978},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.3589295744895935},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.33387133479118347},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.3260369300842285},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3236583471298218},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3027821183204651},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.26693597435951233},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15425676107406616},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.14331898093223572},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkm963","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm963","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_1/D289/7635728/gkm963.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:18037617","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18037617","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:opus-zb.helmholtz-muenchen.de:5722","is_oa":true,"landing_page_url":"https://push-zb.helmholtz-muenchen.de/frontdoor.php?source_opus=5722","pdf_url":null,"source":{"id":"https://openalex.org/S4377196115","display_name":"Site cant be reached","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res. 36, D289-D292 (2008)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2238827","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2238827","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/97335156-3278-4ade-9d79-9fde8aef8692","is_oa":false,"landing_page_url":"https://research.birmingham.ac.uk/en/publications/97335156-3278-4ade-9d79-9fde8aef8692","pdf_url":null,"source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Rattei, T, Tischler, P, Arnold, R, Hamberger, F, Krebs, J, Krumsiek, J, Wachinger, B, St\u00fcmpflen, V & Mewes, W 2008, 'SIMAP--structuring the network of protein similarities', Nucleic Acids Research, vol. 36, no. Database issue, pp. D289-92. https://doi.org/10.1093/nar/gkm963","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkm963","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm963","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_1/D289/7635728/gkm963.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.49000000953674316,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2065820441.pdf","grobid_xml":"https://content.openalex.org/works/W2065820441.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1493209013","https://openalex.org/W2003087950","https://openalex.org/W2096039184","https://openalex.org/W2100990314","https://openalex.org/W2107580398","https://openalex.org/W2107903949","https://openalex.org/W2116999639","https://openalex.org/W2118675686","https://openalex.org/W2124166542","https://openalex.org/W2143210482","https://openalex.org/W2152458080","https://openalex.org/W2152770371","https://openalex.org/W2154370832","https://openalex.org/W2160375677","https://openalex.org/W2161394740","https://openalex.org/W2161732286","https://openalex.org/W2161746138","https://openalex.org/W2166458835","https://openalex.org/W4245145908","https://openalex.org/W4320800138"],"related_works":["https://openalex.org/W150090254","https://openalex.org/W2514476306","https://openalex.org/W3119443523","https://openalex.org/W2804480386","https://openalex.org/W2088164904","https://openalex.org/W2926533301","https://openalex.org/W244816970","https://openalex.org/W2028741573","https://openalex.org/W2135912076","https://openalex.org/W2121560377"],"abstract_inverted_index":{"Protein":[0],"sequences":[1,79],"are":[2],"the":[3,19,26,42,58,130],"most":[4],"important":[5],"source":[6],"of":[7,23,29,41,64,91,108],"evolutionary":[8],"and":[9,38,47,73,80,106,111],"functional":[10],"information":[11],"for":[12,53,116,126,133,140],"new":[13],"proteins.":[14],"In":[15],"order":[16],"to":[17,34,121],"facilitate":[18],"computationally":[20],"intensive":[21],"tasks":[22],"sequence":[24,44,61],"analysis,":[25],"Similarity":[27],"Matrix":[28],"Proteins":[30],"(SIMAP)":[31],"database":[32],"aims":[33],"provide":[35],"a":[36,82,94,112],"comprehensive":[37],"up-to-date":[39],"dataset":[40],"pre-calculated":[43],"similarity":[45],"matrix":[46],"sequence-based":[48],"features":[49,90],"like":[50],"InterPro":[51,87],"domains":[52],"all":[54],"proteins":[55,72,105],"contained":[56],"in":[57],"major":[59],"public":[60],"databases.":[62],"As":[63],"September":[65],"2007,":[66],"SIMAP":[67,92,122],"covers":[68],"approximately":[69],"17":[70],"million":[71,77],"more":[74],"than":[75],"6":[76],"non-redundant":[78],"provides":[81],"complete":[83],"annotation":[84],"based":[85],"on":[86,103],"16.":[88],"Novel":[89],"include":[93],"new,":[95],"portlet-based":[96],"web":[97,131],"portal":[98,132],"providing":[99],"multiple,":[100],"structured":[101],"views":[102],"retrieved":[104],"integration":[107],"protein":[109],"clusters":[110],"unique":[113],"search":[114],"method":[115],"similar":[117],"domain":[118],"architectures.":[119],"Access":[120],"is":[123],"freely":[124],"provided":[125],"academic":[127],"use":[128],"through":[129,137],"individuals":[134],"at":[135,143],"http://mips.gsf.de/simap/and":[136],"Web":[138],"Services":[139],"programmatic":[141],"access":[142],"http://mips.gsf.de/webservices/services/SimapService2.0?wsdl.":[144]},"counts_by_year":[{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":3}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
